CSPI04G26980 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G26980
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	High mobility group B protein 2
Location	Chr4: 23879567 .. 23881741 (+)
RNA-Seq Expression	CSPI04G26980
Synteny	CSPI04G26980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAATGAGGTGGACCAATGAAAGAAGAGTGCGCAGATTATTGAGGTGGCAATAAATTTAGAATCCCGCCTAAATCCCAGCTTTCATTTCATGCGCAATTGAATTTCAATTTCCCATTCCCCTCCATAGGGACTTAATTATCCCCTTTTTTACTCTCAATAACTCCCTCTCTTCCCACCACGTCCGCTTCTTCCTTCCTTCATCCCTCCCTCTTCAAACCCTAAACCTAACCTCTAACCTAACCTAACCTCCTTCCCCGACTTCTCCCTTCGGTACGTTTCATCCATCTCTTTCCTTTTTTCTACTTTTTTTCCCTTCTAATTTCATCTCTTTTCTTTTATTTTCCTTCCAATTGCTGCTGATCCATTACCATACTGCAGGATTGGAAATGAAAGGCGGTAAATCGAGGTCGGAGTCGAAGAAAGCAGACACCAAGTGAGTTTTTTTTGTTTTTTTTGTTTTTTTTGTTTCTTTTATTTTTTTATTGGTCTTGTATGTTTATTTTCTAGCTTTGATCGACCCTAGATCTAGGAAGCTTCATTGTTTTTCAATTACCTGTTCAAAAGCTACGCGTTGACTTTCTTCTATTTGATTGATCGCTTTTGGTGATTTTTTTATCCTTTTAATTGTAGGCTTGCTGTGAAAAAAGGTGCAGCGGCTAAGAAAGGGAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGCGCCTTCTTCGTTTTTATGTAATTTTTTTTTATCTTTTAATTTACCCTTCTGAATGATTATCTGCAAATTGTCTAATTTTGATGGTTTTAGGGTTGCGAAAAAATTGTAAACAAGGGTACAAAGACGACGATCTTGTTTTCCATGAGCGACTACTGATGTTCGAATTAATTAGAAATACCTTTAGGAAATAACAGCGAATATTAGAATTGTTGATTTTCTACAAAATAGTTTCCTTTGATTCGTGGGTCTTTGGCATGTAGATCCTTTGTATTTGCAGTCGTTTTCTTTAGGTAAGTCGAGTACCATCTGACCCATTTGCTGCCCTGTTATTGCATTTGTTTTATTATCAAAGGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAACAACAAAGCAGTGTCTGCTGTAAGCTATTTAACTTTTGTACTAGTTGCTCCTTGTTTCCATTTGAATTTTCGTGACTCTTTTGTGGGAAAGAGTAAAGATGTTGGTTTACAAATGATTCAATCAGGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCAGATGCTGTACGTGATAGCTATCATAGTATTTCTTATACTTATCCTGATATTATAAACTCTCTCTGAATTACTGTTTATAATATCAGGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAACATGAAGGCCTATAACAAGAAACAGGTATATTGTCTCGGAAAAGTCGTTCAATCATTTTGATTGCAGCACTTATTTTCTTATGTGAATGAATTCTCATATATCGGTTGAGTTCAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGTTAGCTTTCTTAAGGAGTTTAGTTAAATTAAACATCTTAAAGTTGGAACTGTTTTTTCATTTCATTTTTCCCCCTCCAATTTTGCAGGACGATGACGAGTGAAGATGTAGATGATAGTAACGTCATTTAGGGTGTCAGTGTATTTGATCTTTCCATAATAATGGTTTGATCATTTCCTGTTATTTTGTTTTTTATATCATGAAAATATGTTAGTATCTCCCTGTTATTTTGTTTTTCATATCATGAAAATATGTTGGTATCTCCCTGTTATTTTGTTTGTGCATTCAGTAACGAAGGGTTGTAATGGGAGATCATCTGCCTTGTACCTTACAATGTTAGTTATTCCAATCCAACTGTGTTTTTTTAACTTTTCAACTGAGATAACAAGATCACTCCACACATCATGTGACAATATCAAAACCTTCACTTATGTATTACATTTTCCAATCAAGCTCAGTTGGGCACCCTTAACAGAGTTCTCTCTTTAATTTCTCCAGTGGTTGTGTTTTTATATGTTTTTAGCCGTGTCCTCTTCATTGTTATTTGTAGGCC

mRNA sequence

GAGAATGAGGTGGACCAATGAAAGAAGAGTGCGCAGATTATTGAGGTGGCAATAAATTTAGAATCCCGCCTAAATCCCAGCTTTCATTTCATGCGCAATTGAATTTCAATTTCCCATTCCCCTCCATAGGGACTTAATTATCCCCTTTTTTACTCTCAATAACTCCCTCTCTTCCCACCACGTCCGCTTCTTCCTTCCTTCATCCCTCCCTCTTCAAACCCTAAACCTAACCTCTAACCTAACCTAACCTCCTTCCCCGACTTCTCCCTTCGGATTGGAAATGAAAGGCGGTAAATCGAGGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCTGTGAAAAAAGGTGCAGCGGCTAAGAAAGGGAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGCGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAACAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCAGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAACATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGACGATGACGAGTGAAGATGTAGATGATAGTAACGTCATTTAGGGTGTCAGTGTATTTGATCTTTCCATAATAATGGTTTGATCATTTCCTGTTATTTTGTTTTTTATATCATGAAAATATGTTAGTATCTCCCTGTTATTTTGTTTTTCATATCATGAAAATATGTTGGTATCTCCCTGTTATTTTGTTTGTGCATTCAGTAACGAAGGGTTGTAATGGGAGATCATCTGCCTTGTACCTTACAATGTTAGTTATTCCAATCCAACTGTGTTTTTTTAACTTTTCAACTGAGATAACAAGATCACTCCACACATCATGTGACAATATCAAAACCTTCACTTATGTATTACATTTTCCAATCAAGCTCAGTTGGGCACCCTTAACAGAGTTCTCTCTTTAATTTCTCCAGTGGTTGTGTTTTTATATGTTTTTAGCCGTGTCCTCTTCATTGTTATTTGTAGGCC

Coding sequence (CDS)

ATGAAAGGCGGTAAATCGAGGTCGGAGTCGAAGAAAGCAGACACCAAGCTTGCTGTGAAAAAAGGTGCAGCGGCTAAGAAAGGGAGTAAGAAGGCAGGGAAAGATCCTAACAAACCCAAGAGGCCTGCCAGCGCCTTCTTCGTTTTTATGGAAGAGTTCAGGAAGAAGTTCAATGAGGAGAATCCGAACAACAAAGCAGTGTCTGCTGTTGGTAAAGCTGCTGGACAGAAATGGAAATCAATGTCAGATGCTGAAAAAGCACCTTACATTGCTAAGGCTGACAAGAGGAAGGTTGAATATGAAAAAAACATGAAGGCCTATAACAAGAAACAGGCCAGTGGAGCCAATGCTGCAGAAGAAGATGAATCTGAGAAATCAATGTCTGAGGTGAATGATGATGAGGATGGAGATGAGGGCAGCGAAGAGGACGATGACGAGTGA

Protein sequence

MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEEDESEKSMSEVNDDEDGDEGSEEDDDE*

Homology

[Close]

BLAST of CSPI04G26980 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-46
Identity = 110/151 (72.85%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAV-KKGAAAK----KGSKKAGKDPNKPKRPASAFFVFMEEFRK 60
           MKGGKS++ESK+AD KLAV KKGAA K     G  KA KDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 61  KFNEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGA 120
            FN+E+P NKAVSAVGKAAG KWK+MSDAEKAPY+AK++KRKVEYEKNM+AYNKKQA G 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

Query: 121 NAAEEDESEKSMSEVNDDEDGDEGSEEDDDE 147
              +E+ESEKS+SEVND++D +EGS E++D+
Sbjct: 121 TGGDEEESEKSVSEVNDEDDDEEGSGEEEDD 151

[Close]

BLAST of CSPI04G26980 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.1e-39
Identity = 98/146 (67.12%), Postives = 121/146 (82.88%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKGGKS++   K+D KLAVKK AA  K +KKA KDPNKPKRP SAFFVFME+FRK + E+
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           +PNNK+V+ VGKA G KWK ++ AEKAP+I+KA+KRK EYEKN++AYNKKQA+G  AAEE
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG--AAEE 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 147
           +ES+KS SEVNDD++  +GS EDD E
Sbjct: 121 EESDKSRSEVNDDDEDQDGSGEDDSE 141

[Close]

BLAST of CSPI04G26980 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-38
Identity = 95/146 (65.07%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKG KS++E++   TKL+V K  A  KG+K A KDPNKPKRP+SAFFVFME+FR  + EE
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA--KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           +P NK+V+AVGKA G+KWKS+SD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    E+
Sbjct: 61  HPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--ED 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 147
           +ES+KS+SEVND++D ++GSEE++D+
Sbjct: 121 EESDKSVSEVNDEDDAEDGSEEEEDD 140

[Close]

BLAST of CSPI04G26980 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 5.6e-37
Identity = 90/146 (61.64%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKG KS++E++ +   +  K    A +G K A KDPNKPKRPASAFFVFME+FR+ F +E
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFKKE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    E+
Sbjct: 61  NPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--ED 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 147
           +ES+KS+SEVND++D ++GSEE++D+
Sbjct: 121 EESDKSVSEVNDEDDAEDGSEEEEDD 143

[Close]

BLAST of CSPI04G26980 vs. ExPASy Swiss-Prot
Match: P27347 (DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-33
Identity = 96/157 (61.15%), Postives = 120/157 (76.43%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAK--KGSK-KAGKDPNKPKRPASAFFVFMEEFRKKF 60
           MKG KS+  + KAD KLAVK   A K  KG K KAGKDPNKPKR  SAFFVFMEEFRK+F
Sbjct: 1   MKGAKSKG-AAKADAKLAVKSKGAEKPAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query: 61  NEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 120
            E+NP NK+V+AVGKAAG +WKS+S+++KAPY+AKA+K K+EY K + AYNK +++ A  
Sbjct: 61  KEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKK 120

Query: 121 A--------EEDESEKSMSEVNDDEDGDEGSEEDDDE 147
           A        +E+ES+KS SEVN DED +EGSEED+D+
Sbjct: 121 APAKEEEEEDEEESDKSKSEVN-DEDDEEGSEEDEDD 155

[Close]

BLAST of CSPI04G26980 vs. ExPASy TrEMBL
Match: A0A1S3BW96 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.1e-63
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKGGKS+SESKKADTKLAVKKGAA KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA+E
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAADE 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 147
           DESEKSMSEVNDDEDGDEGSEE+DD+
Sbjct: 121 DESEKSMSEVNDDEDGDEGSEEEDDD 146

[Close]

BLAST of CSPI04G26980 vs. ExPASy TrEMBL
Match: A0A6J1IF57 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 135/148 (91.22%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGA--AAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKS+SESKKADTKLAVKKGA  A KKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEDDDE 147
           EEDESEKS+SEVNDDE+GDEGSEE+DD+
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDD 148

[Close]

BLAST of CSPI04G26980 vs. ExPASy TrEMBL
Match: A0A6J1FF34 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.2e-58
Identity = 135/148 (91.22%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGA--AAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKS+SESKKADTKLAVKKGA  A KKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEDDDE 147
           EEDESEKS+SEVNDDE+GDEGSEE+DD+
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDD 148

[Close]

BLAST of CSPI04G26980 vs. ExPASy TrEMBL
Match: A0A6J1CNM1 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.6e-58
Identity = 136/149 (91.28%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAA---AKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKF 60
           MKGGKS+SESKKAD KL+VKKGAA   A +G KKAGKDPNKPKRPASAFFVFMEEFRKKF
Sbjct: 1   MKGGKSKSESKKADAKLSVKKGAAKAGATRG-KKAGKDPNKPKRPASAFFVFMEEFRKKF 60

Query: 61  NEENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 120
           NEENPNNKAVSAVGKAAGQKWKS+SDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA
Sbjct: 61  NEENPNNKAVSAVGKAAGQKWKSLSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANA 120

Query: 121 AEEDESEKSMSEVNDDEDGDEGSEEDDDE 147
           AEEDESEKSMSEVNDDEDGDEGSEE++D+
Sbjct: 121 AEEDESEKSMSEVNDDEDGDEGSEEEEDD 148

[Close]

BLAST of CSPI04G26980 vs. ExPASy TrEMBL
Match: A0A5A7VCD7 (HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003710 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.0e-57
Identity = 133/146 (91.10%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKGGKS         KLAVKKGAA KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE
Sbjct: 1   MKGGKS---------KLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA+E
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAADE 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 147
           DESEKSMSEVNDDEDGDEGSEE+DD+
Sbjct: 121 DESEKSMSEVNDDEDGDEGSEEEDDD 137

[Close]

BLAST of CSPI04G26980 vs. NCBI nr
Match: XP_004145545.1 (HMG1/2-like protein [Cucumis sativus] >KAE8649961.1 hypothetical protein Csa_012361 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 4.7e-65
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE
Sbjct: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 147
           DESEKSMSEVNDDEDGDEGSEEDDDE
Sbjct: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 146

[Close]

BLAST of CSPI04G26980 vs. NCBI nr
Match: XP_008452973.1 (PREDICTED: HMG1/2-like protein [Cucumis melo])

HSP 1 Score: 251.5 bits (641), Expect = 4.4e-63
Identity = 141/146 (96.58%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKGGKS+SESKKADTKLAVKKGAA KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA+E
Sbjct: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAADE 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 147
           DESEKSMSEVNDDEDGDEGSEE+DD+
Sbjct: 121 DESEKSMSEVNDDEDGDEGSEEEDDD 146

[Close]

BLAST of CSPI04G26980 vs. NCBI nr
Match: XP_038896795.1 (HMG1/2-like protein isoform X1 [Benincasa hispida])

HSP 1 Score: 241.1 bits (614), Expect = 5.9e-60
Identity = 137/148 (92.57%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGA--AAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKS+S+SKKAD KLAVKKGA  A KKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSDSKKADAKLAVKKGAANAGKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSM+DAEKAPYIAKADKRK+EYEKNMKAYNKKQASGANA 
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMTDAEKAPYIAKADKRKIEYEKNMKAYNKKQASGANAE 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEDDDE 147
           EEDESEKSMSEVNDDEDGDEGSEE+DD+
Sbjct: 121 EEDESEKSMSEVNDDEDGDEGSEEEDDD 148

[Close]

BLAST of CSPI04G26980 vs. NCBI nr
Match: XP_022936925.1 (HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo] >KAG7024101.1 hypothetical protein SDJN02_12914, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 135/148 (91.22%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGA--AAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKS+SESKKADTKLAVKKGA  A KKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEDDDE 147
           EEDESEKS+SEVNDDE+GDEGSEE+DD+
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDD 148

[Close]

BLAST of CSPI04G26980 vs. NCBI nr
Match: XP_022975791.1 (HMG1/2-like protein [Cucurbita maxima])

HSP 1 Score: 235.7 bits (600), Expect = 2.5e-58
Identity = 135/148 (91.22%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGA--AAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFN 60
           MKGGKS+SESKKADTKLAVKKGA  A KKGSKKA KDPNKPKRPASAFFVFMEEFRKKFN
Sbjct: 1   MKGGKSKSESKKADTKLAVKKGAANAGKKGSKKAAKDPNKPKRPASAFFVFMEEFRKKFN 60

Query: 61  EENPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAA 120
           EENPNNKAVSAVGKAAGQKWKSMS+A+KAPY+AKADKRKVEYEK MKAYNKKQASGANAA
Sbjct: 61  EENPNNKAVSAVGKAAGQKWKSMSEADKAPYVAKADKRKVEYEKVMKAYNKKQASGANAA 120

Query: 121 EEDESEKSMSEVNDDEDGDEGSEEDDDE 147
           EEDESEKS+SEVNDDE+GDEGSEE+DD+
Sbjct: 121 EEDESEKSVSEVNDDEEGDEGSEEEDDD 148

[Close]

BLAST of CSPI04G26980 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 160.6 bits (405), Expect = 9.5e-40
Identity = 95/146 (65.07%), Postives = 122/146 (83.56%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKG KS++E++   TKL+V K  A  KG+K A KDPNKPKRP+SAFFVFME+FR  + EE
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA--KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           +P NK+V+AVGKA G+KWKS+SD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    E+
Sbjct: 61  HPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--ED 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 147
           +ES+KS+SEVND++D ++GSEE++D+
Sbjct: 121 EESDKSVSEVNDEDDAEDGSEEEEDD 140

[Close]

BLAST of CSPI04G26980 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-39
Identity = 94/142 (66.20%), Postives = 118/142 (83.10%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKG KS++E++   TKL+V K  A  KG+K A KDPNKPKRP+SAFFVFME+FR  + EE
Sbjct: 1   MKGAKSKAETR--STKLSVTKKPA--KGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           +P NK+V+AVGKA G+KWKS+SD+EKAPY+AKADKRKVEYEKNMKAYNKK   G    E+
Sbjct: 61  HPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPK--ED 120

Query: 121 DESEKSMSEVNDDEDGDEGSEE 143
           +ES+KS+SEVND++D ++GSEE
Sbjct: 121 EESDKSVSEVNDEDDAEDGSEE 136

[Close]

BLAST of CSPI04G26980 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 158.3 bits (399), Expect = 4.7e-39
Identity = 92/145 (63.45%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKG KS++E++ +   +  K    A +G K A KDPNKPKRPASAFFVFME+FR+ F +E
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFKKE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    E+
Sbjct: 61  NPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--ED 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDD 146
           +ES+KS+SEVND++D ++GSEEDDD
Sbjct: 121 EESDKSVSEVNDEDDAEDGSEEDDD 142

[Close]

BLAST of CSPI04G26980 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-38
Identity = 91/146 (62.33%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKG KS++E++ +   +  K    A +G K A KDPNKPKRPASAFFVFME+FR+ F +E
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFKKE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    E+
Sbjct: 61  NPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--ED 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 147
           +ES+KS+SEVND++D ++GSEE+DD+
Sbjct: 121 EESDKSVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of CSPI04G26980 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 155.2 bits (391), Expect = 4.0e-38
Identity = 90/146 (61.64%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 1   MKGGKSRSESKKADTKLAVKKGAAAKKGSKKAGKDPNKPKRPASAFFVFMEEFRKKFNEE 60
           MKG KS++E++ +   +  K    A +G K A KDPNKPKRPASAFFVFME+FR+ F +E
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRG-KAAAKDPNKPKRPASAFFVFMEDFRETFKKE 60

Query: 61  NPNNKAVSAVGKAAGQKWKSMSDAEKAPYIAKADKRKVEYEKNMKAYNKKQASGANAAEE 120
           NP NK+V+ VGKAAG KWKS+SD+EKAPY+AKA+KRKVEYEKN+KAYNKK   G    E+
Sbjct: 61  NPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPK--ED 120

Query: 121 DESEKSMSEVNDDEDGDEGSEEDDDE 147
           +ES+KS+SEVND++D ++GSEE++D+
Sbjct: 121 EESDKSVSEVNDEDDAEDGSEEEEDD 143

The following BLAST results are available for this feature:

BLAST of CSPI04G26980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26585	2.3e-46	72.85	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P40619	2.1e-39	67.12	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P93047	1.3e-38	65.07	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	5.6e-37	61.64	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P27347	1.3e-33	61.15	DNA-binding protein MNB1B OS=Zea mays OX=4577 GN=MNB1B PE=1 SV=1	[more]

BLAST of CSPI04G26980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BW96	2.1e-63	96.58	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103493820 PE=3 SV=1	[more]
A0A6J1IF57	1.2e-58	91.22	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111476382 PE=3 SV=1	[more]
A0A6J1FF34	1.2e-58	91.22	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111443365 PE=3 SV=1	[more]
A0A6J1CNM1	4.6e-58	91.28	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111012664 PE=3 SV=1	[more]
A0A5A7VCD7	3.0e-57	91.10	HMG1/2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G...	[more]

BLAST of CSPI04G26980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145545.1	4.7e-65	100.00	HMG1/2-like protein [Cucumis sativus] >KAE8649961.1 hypothetical protein Csa_012...	[more]
XP_008452973.1	4.4e-63	96.58	PREDICTED: HMG1/2-like protein [Cucumis melo]	[more]
XP_038896795.1	5.9e-60	92.57	HMG1/2-like protein isoform X1 [Benincasa hispida]	[more]
XP_022936925.1	2.5e-58	91.22	HMG1/2-like protein [Cucurbita moschata] >XP_023536298.1 HMG1/2-like protein [Cu...	[more]
XP_022975791.1	2.5e-58	91.22	HMG1/2-like protein [Cucurbita maxima]	[more]

BLAST of CSPI04G26980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.1	9.5e-40	65.07	high mobility group B3	[more]
AT1G20696.3	1.6e-39	66.20	high mobility group B3	[more]
AT1G20693.2	4.7e-39	63.45	high mobility group B2	[more]
AT1G20693.3	1.4e-38	62.33	high mobility group B2	[more]
AT1G20693.1	4.0e-38	61.64	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..146
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..146
None	No IPR available	PANTHER	PTHR46261:SF22	HIGH MOBILITY GROUP B PROTEIN 2-RELATED	coord: 1..144
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 39..105 e-value: 1.03734E-14 score: 62.6453
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 38..109 e-value: 2.9E-26 score: 103.3
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 39..108 e-value: 6.6E-24 score: 84.1
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 39..108 score: 20.588604
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 22..124 e-value: 1.0E-26 score: 95.2
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 25..113
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G26980.1	CSPI04G26980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin