CSPI04G23400 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G23400
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 21500603 .. 21500821 (+)
RNA-Seq ExpressionCSPI04G23400
SyntenyCSPI04G23400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGAAAGCTCTTCGTCAGGCTCATACAGTTCTTCGTCTCCTTATGATATGTCGTCAGGGGCAGAACCCTCTACTTTGACACCAATCTCTCCATCGGCATCACCTTCTTCACCAGCGGAGGAGGGAGGAGAGCCACCAGCGGAGGAGGGGGGAGAGCCACCAGCGGAAGAGGGAGGAGAGCCACCAGCAGAGGAGGGATCAGAAGAGCCACCAGCGGAC

mRNA sequence

GGAGAAAGCTCTTCGTCAGGCTCATACAGTTCTTCGTCTCCTTATGATATGTCGTCAGGGGCAGAACCCTCTACTTTGACACCAATCTCTCCATCGGCATCACCTTCTTCACCAGCGGAGGAGGGAGGAGAGCCACCAGCGGAGGAGGGGGGAGAGCCACCAGCGGAAGAGGGAGGAGAGCCACCAGCAGAGGAGGGATCAGAAGAGCCACCAGCGGAC

Coding sequence (CDS)

GGAGAAAGCTCTTCGTCAGGCTCATACAGTTCTTCGTCTCCTTATGATATGTCGTCAGGGGCAGAACCCTCTACTTTGACACCAATCTCTCCATCGGCATCACCTTCTTCACCAGCGGAGGAGGGAGGAGAGCCACCAGCGGAGGAGGGGGGAGAGCCACCAGCGGAAGAGGGAGGAGAGCCACCAGCAGAGGAGGGATCAGAAGAGCCACCAGCGGAC

Protein sequence

GESSSSGSYSSSSPYDMSSGAEPSTLTPISPSASPSSPAEEGGEPPAEEGGEPPAEEGGEPPAEEGSEEPPAD
Homology
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BLAST of CSPI04G23400 vs. NCBI nr
Match: XP_004141358.3 (early nodulin-like protein 2 [Cucumis sativus] >KAE8649838.1 hypothetical protein Csa_012805 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 3.1e-17
Identity = 67/79 (84.81%), Postives = 68/79 (86.08%), Query Frame = 0 

Query: 1   GESSSSGSYSSSSPYDMSSGAEPSTLTPISPSASPSSPAEEGGEPPAE------EGGEPP 60
           GESSSSGSYSSSSPYDMSSGAEPSTLTPISPSASPSS   EGGEPPAE      EGGEPP
Sbjct: 318 GESSSSGSYSSSSPYDMSSGAEPSTLTPISPSASPSSAPAEGGEPPAEGGEPPAEGGEPP 377

Query: 61  AEEGGEPPAEEGSEEPPAD 74
           AEEGGEPPAEEG  EPPA+
Sbjct: 378 AEEGGEPPAEEGG-EPPAE 395

The following BLAST results are available for this feature:
BLAST of CSPI04G23400 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G23400 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G23400 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141358.33.1e-1784.81early nodulin-like protein 2 [Cucumis sativus] >KAE8649838.1 hypothetical protei... [more]
BLAST of CSPI04G23400 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G23400.1CSPI04G23400.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
cellular_component GO:0046658 anchored component of plasma membrane
molecular_function GO:0009055 electron transfer activity