CSPI04G09890 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G09890
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 7861805 .. 7862086 (+)
RNA-Seq ExpressionCSPI04G09890
SyntenyCSPI04G09890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGAGATAGAAAAGATAGATAGGGGAAAGAGGAAATTAGAGAGGGGAAATGGAAAGAGGAAAATAAAGAGACAAAGGGGAAAGAGGACAATGGACATAGGAATGGAAAAGAGGAAAATGGGAGGAAGGGGAAAGAGGAAGAAGACAACAAGGAGGGACGAATGTTGCAAAAAAAATTGGGGGTATTACGCGGGTTACGATGGAGTGAAGGGAAGTGTAAAAGAGATTTTGGAGGATTTTGGAAACCCTAAACTAAATTGGACTCTAAATCACACGTAG

mRNA sequence

ATGACGGAGATAGAAAAGATAGATAGGGGAAAGAGGAAATTAGAGAGGGGAAATGGAAAGAGGAAAATAAAGAGACAAAGGGGAAAGAGGACAATGGACATAGGAATGGAAAAGAGGAAAATGGGAGGAAGGGGAAAGAGGAAGAAGACAACAAGGAGGGACGAATGTTGCAAAAAAAATTGGGGGTATTACGCGGGTTACGATGGAGTGAAGGGAAGTGTAAAAGAGATTTTGGAGGATTTTGGAAACCCTAAACTAAATTGGACTCTAAATCACACGTAG

Coding sequence (CDS)

ATGACGGAGATAGAAAAGATAGATAGGGGAAAGAGGAAATTAGAGAGGGGAAATGGAAAGAGGAAAATAAAGAGACAAAGGGGAAAGAGGACAATGGACATAGGAATGGAAAAGAGGAAAATGGGAGGAAGGGGAAAGAGGAAGAAGACAACAAGGAGGGACGAATGTTGCAAAAAAAATTGGGGGTATTACGCGGGTTACGATGGAGTGAAGGGAAGTGTAAAAGAGATTTTGGAGGATTTTGGAAACCCTAAACTAAATTGGACTCTAAATCACACGTAG

Protein sequence

MTEIEKIDRGKRKLERGNGKRKIKRQRGKRTMDIGMEKRKMGGRGKRKKTTRRDECCKKNWGYYAGYDGVKGSVKEILEDFGNPKLNWTLNHT*
Homology
[Close]
BLAST of CSPI04G09890 vs. NCBI nr
Match: KAE8649324.1 (hypothetical protein Csa_015238, partial [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 2.6e-24
Identity = 65/84 (77.38%), Postives = 69/84 (82.14%), Query Frame = 0 

Query: 9  RGKRKLERGNGKRKIKRQRGKRTMDIGMEKRKMGGRGKRKKTTRRDECCKKNWGYYAGYD 68
          RGKRKLERGNGKRKIKRQRGKRTMDIGMEKRKM GRGKRKKTTRRDECCKK         
Sbjct: 1  RGKRKLERGNGKRKIKRQRGKRTMDIGMEKRKMRGRGKRKKTTRRDECCKK----LGVLR 60

Query: 69 GVKGSVKEILEDFGNPKLNWTLNH 93
          G++ S ++   DFGNPKLNWTLNH
Sbjct: 61 GLRWSEEKCKRDFGNPKLNWTLNH 80

The following BLAST results are available for this feature:
BLAST of CSPI04G09890 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G09890 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G09890 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649324.12.6e-2477.38hypothetical protein Csa_015238, partial [Cucumis sativus][more]
BLAST of CSPI04G09890 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G09890.1CSPI04G09890.1mRNA