CSPI04G06400 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G06400
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic
Location	Chr4: 4445771 .. 4446529 (-)
RNA-Seq Expression	CSPI04G06400
Synteny	CSPI04G06400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGCACTCATCTCTATAATCAGTAGACTCATGTCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTCCGCTTCTTAAATCCTCCTTTCTCCCACAAAACCGCCGCCGCCTCCTTCTCCACCGACCATTTCCCCTGCCCGGCCGTCACGCCTCATCAACCCAACACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCAAGGTCTAAAAGAGGAACTCAAGAGAAACGTCGACGACAATCCAGTCCTCGCAGATGGAAGCGAAATTCCAGGAACCTCCGATAAATTACCGGTTGATAGTGTTCCAGAAGATGGGTTCGAGAAGGAATTAATGGGCTTAACCGGTGGGTTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAGAATCCTCCTCCTCGGAAATCCTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTATAAATACACAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCTAACAATCCGTACTACATGTATTGTGGAATCGTTCAAAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAAATCGGCTGTTCTTGAACCGCTTCTTCAAAAGGATTCTCAATGA

mRNA sequence

ATCGCACTCATCTCTATAATCAGTAGACTCATGTCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTCCGCTTCTTAAATCCTCCTTTCTCCCACAAAACCGCCGCCGCCTCCTTCTCCACCGACCATTTCCCCTGCCCGGCCGTCACGCCTCATCAACCCAACACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCAAGGTCTAAAAGAGGAACTCAAGAGAAACGTCGACGACAATCCAGTCCTCGCAGATGGAAGCGAAATTCCAGGAACCTCCGATAAATTACCGGTTGATAGTGTTCCAGAAGATGGGTTCGAGAAGGAATTAATGGGCTTAACCGGTGGGTTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAGAATCCTCCTCCTCGGAAATCCTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTATAAATACACAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCTAACAATCCGTACTACATGTATTGTGGAATCGTTCAAAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAAATCGGCTGTTCTTGAACCGCTTCTTCAAAAGGATTCTCAATGA

Coding sequence (CDS)

ATGTCCATGGCTTCCTCAATCTCCCTTCCATCTCCTCAAACTCCGCTTCTTAAATCCTCCTTTCTCCCACAAAACCGCCGCCGCCTCCTTCTCCACCGACCATTTCCCCTGCCCGGCCGTCACGCCTCATCAACCCAACACGCTTTCCGGCCCTCCGCCGCCTTCGATTTAGCCCAGCTTCTCGGCGGAAGAGGCCTCTGCAATGGCGAGCAAGGTCTAAAAGAGGAACTCAAGAGAAACGTCGACGACAATCCAGTCCTCGCAGATGGAAGCGAAATTCCAGGAACCTCCGATAAATTACCGGTTGATAGTGTTCCAGAAGATGGGTTCGAGAAGGAATTAATGGGCTTAACCGGTGGGTTTCCCGGCGGAGAGAAAGGATTAAAAAAATTCATATCGGAGAATCCTCCTCCTCGGAAATCCTCCGCTTCAAAATCCGGCGAAATCGGCTCGATTATAAATACACAGAAACCAAAGCCGCCGGATCTTCCACTGTTGCTACCGGGAATGATTGCGATTGTGAAGAATCCTAACAATCCGTACTACATGTATTGTGGAATCGTTCAAAGAATCACAGATGGAAAAGCTGGGGTTCTTTTTGAAGGAGGAAATTGGGATCGATTGATAACGTTTAGATTGGAGGAGCTGGAACGAAGAGAAAAAGGACCGCCGATGAAGAACCCTAAATCGGCTGTTCTTGAACCGCTTCTTCAAAAGGATTCTCAATGA

Protein sequence

MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFPGGEKGLKKFISENPPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKDSQ*

Homology

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BLAST of CSPI04G06400 vs. ExPASy Swiss-Prot
Match: Q9T0A4 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 8.3e-70
Identity = 138/241 (57.26%), Postives = 178/241 (73.86%), Query Frame = 0


Query: 5   SSISLPSPQTPLLKSSFLPQNRRRLLLHRP-FPLPGRHASSTQHAFRPSAAFDLAQLLGG 64
           SSI++P+ +TP+ +S FL Q  +   ++R  FP P +   S  +  +    F+L +++GG
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQ--QSKLYQVKAMGKFNLWEVMGG 63

Query: 65  RGLCNGEQGLKEELKRNVDDNPVL--ADGSEIPGTSDKLPVD-SVPEDGFEKELMGLTGG 124
           RGLCNGE+G+++EL+RN++D      A+ +E    SD   +   VPEDGFEKE+MGLTGG
Sbjct: 64  RGLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 125 FPGGEKGLKKFISEN--PPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPN 184
           FPGGEKGLK FI +N  PPP    A +  +  ++   +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 185 NPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQ 240
           +PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNPKS +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

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BLAST of CSPI04G06400 vs. ExPASy TrEMBL
Match: A0A0A0KV29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052580 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128
Identity = 233/238 (97.90%), Postives = 234/238 (98.32%), Query Frame = 0


Query: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60
           MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL
Sbjct: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60

Query: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120
           LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG
Sbjct: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPPRK SASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQ 239
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSA   PLL+
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAGGGPLLR 238

[Close]

BLAST of CSPI04G06400 vs. ExPASy TrEMBL
Match: A0A5D3CYY1 (NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003910 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.0e-127
Identity = 227/240 (94.58%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASST HAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+G++EELKRNVDDNPV+ADG+EIP TS KLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 123 GGEKGLKKFISENPPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYY 182
           GGEKGLKKFISENPPPRK SASKSGEIGSI+NT+KPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 183 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKDSQ 242
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEP LQKDSQ
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240

[Close]

BLAST of CSPI04G06400 vs. ExPASy TrEMBL
Match: A0A1S3BSR5 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493099 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 2.0e-127
Identity = 227/240 (94.58%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASST HAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+G++EELKRNVDDNPV+ADG+EIP TS KLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 123 GGEKGLKKFISENPPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYY 182
           GGEKGLKKFISENPPPRK SASKSGEIGSI+NT+KPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 183 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKDSQ 242
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEP LQKDSQ
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240

[Close]

BLAST of CSPI04G06400 vs. ExPASy TrEMBL
Match: A0A6J1IWU0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481312 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 7.0e-104
Identity = 198/242 (81.82%), Postives = 216/242 (89.26%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R AS + H FRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120

Query: 123 GGEKGLKKFISEN--PPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182
           GGEKGL+KFI+EN  PPP K SASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238

[Close]

BLAST of CSPI04G06400 vs. ExPASy TrEMBL
Match: A0A6J1FWM0 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448039 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 6.6e-102
Identity = 196/242 (80.99%), Postives = 213/242 (88.02%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R A  + H  RPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRALPSHHTSRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+GL EELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGEKGLNEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120

Query: 123 GGEKGLKKFISEN--PPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182
           GGEKGL+KFISEN  PPP K SASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238

[Close]

BLAST of CSPI04G06400 vs. NCBI nr
Match: XP_004148998.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis sativus] >KAE8649207.1 hypothetical protein Csa_014581 [Cucumis sativus])

HSP 1 Score: 486.5 bits (1251), Expect = 1.3e-133
Identity = 241/242 (99.59%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60
           MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL
Sbjct: 1   MSMASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQL 60

Query: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120
           LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG
Sbjct: 61  LGGRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGG 120

Query: 121 FPGGEKGLKKFISENPPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180
           FPGGEKGLKKFISENPPPRK SASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP
Sbjct: 121 FPGGEKGLKKFISENPPPRKPSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 180

Query: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 240
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 240

Query: 241 SQ 243
           SQ
Sbjct: 241 SQ 242

[Close]

BLAST of CSPI04G06400 vs. NCBI nr
Match: XP_008451952.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis melo] >KAA0044900.1 NAD(P)H-quinone oxidoreductase subunit S [Cucumis melo var. makuwa] >TYK16570.1 NAD(P)H-quinone oxidoreductase subunit S [Cucumis melo var. makuwa])

HSP 1 Score: 464.9 bits (1195), Expect = 4.2e-127
Identity = 227/240 (94.58%), Postives = 235/240 (97.92%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASST HAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTHHAFRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+G++EELKRNVDDNPV+ADG+EIP TS KLPVDSVPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGVEEELKRNVDDNPVIADGNEIPETSTKLPVDSVPEDGFEKELMGLTGGFP 120

Query: 123 GGEKGLKKFISENPPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNPYY 182
           GGEKGLKKFISENPPPRK SASKSGEIGSI+NT+KPKPPDLPLLLPGMIAIVKNPNNPYY
Sbjct: 121 GGEKGLKKFISENPPPRKPSASKSGEIGSILNTEKPKPPDLPLLLPGMIAIVKNPNNPYY 180

Query: 183 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKDSQ 242
           MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEP LQKDSQ
Sbjct: 181 MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPFLQKDSQ 240

[Close]

BLAST of CSPI04G06400 vs. NCBI nr
Match: XP_038902579.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902587.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902595.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902601.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_038902605.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida])

HSP 1 Score: 418.7 bits (1075), Expect = 3.4e-113
Identity = 213/243 (87.65%), Postives = 224/243 (92.18%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLP+PQTPLLKS+FL QNRRR LLHRPFPLP R AS T HAFRPSAAFDLAQLLG
Sbjct: 1   MASSISLPTPQTPLLKSTFLGQNRRRFLLHRPFPLPHR-ASPTHHAFRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+GLKEELKRNV+DNPV ADG EIP TS+KL VD VPEDGFEKELMGLTGGFP
Sbjct: 61  GRGLCNGERGLKEELKRNVEDNPV-ADGGEIPETSEKLAVDRVPEDGFEKELMGLTGGFP 120

Query: 123 GGEKGLKKFISENPPP---RKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNN 182
           GGEKGL+KFISENPPP    K SAS S EIG+I+++QKPKPPDLPLLLPGMIAIVKNPNN
Sbjct: 121 GGEKGLRKFISENPPPPPRPKPSASNSSEIGAILSSQKPKPPDLPLLLPGMIAIVKNPNN 180

Query: 183 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQK 242
           PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQ 
Sbjct: 181 PYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQN 240

[Close]

BLAST of CSPI04G06400 vs. NCBI nr
Match: XP_023553886.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.9 bits (995), Expect = 6.5e-104
Identity = 199/242 (82.23%), Postives = 216/242 (89.26%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQ+PLLKS+FL Q  RR  LHR FPLP R AS + H FRPSA+FDLAQLLG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGQTTRRFHLHRQFPLP-RRASPSHHTFRPSASFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120

Query: 123 GGEKGLKKFISEN--PPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182
           GGEKGL+KFISEN  PPP K SASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLRKFISENPPPPPPKPSASKSIEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238

[Close]

BLAST of CSPI04G06400 vs. NCBI nr
Match: XP_022982522.1 (NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima])

HSP 1 Score: 386.7 bits (992), Expect = 1.4e-103
Identity = 198/242 (81.82%), Postives = 216/242 (89.26%), Query Frame = 0


Query: 3   MASSISLPSPQTPLLKSSFLPQNRRRLLLHRPFPLPGRHASSTQHAFRPSAAFDLAQLLG 62
           MASSISLPSPQ+PLLKS+FL +  RR  LHR FPLP R AS + H FRPSAAFDLAQLLG
Sbjct: 1   MASSISLPSPQSPLLKSTFLGRTTRRFHLHRQFPLP-RRASPSHHTFRPSAAFDLAQLLG 60

Query: 63  GRGLCNGEQGLKEELKRNVDDNPVLADGSEIPGTSDKLPVDSVPEDGFEKELMGLTGGFP 122
           GRGLCNGE+GLKEELKRNV +  +   G+EIP T++KL VD VPEDGF+KELMGLTGGFP
Sbjct: 61  GRGLCNGEKGLKEELKRNVVEETI---GAEIPETTEKLAVDKVPEDGFDKELMGLTGGFP 120

Query: 123 GGEKGLKKFISEN--PPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPNNP 182
           GGEKGL+KFI+EN  PPP K SASKS EIG+I ++QKPKPPDLPLLLPGMIAIVKNPN+P
Sbjct: 121 GGEKGLRKFITENPPPPPPKPSASKSVEIGAIPSSQKPKPPDLPLLLPGMIAIVKNPNSP 180

Query: 183 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQKD 242
           YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNP+SAVLEPLLQKD
Sbjct: 181 YYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPRSAVLEPLLQKD 238

[Close]

BLAST of CSPI04G06400 vs. TAIR 10
Match: AT4G23890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). )

HSP 1 Score: 265.0 bits (676), Expect = 5.9e-71
Identity = 138/241 (57.26%), Postives = 178/241 (73.86%), Query Frame = 0


Query: 5   SSISLPSPQTPLLKSSFLPQNRRRLLLHRP-FPLPGRHASSTQHAFRPSAAFDLAQLLGG 64
           SSI++P+ +TP+ +S FL Q  +   ++R  FP P +   S  +  +    F+L +++GG
Sbjct: 4   SSITIPTIRTPIHRSKFLGQTHQFSTVNRSVFPPPKQ--QSKLYQVKAMGKFNLWEVMGG 63

Query: 65  RGLCNGEQGLKEELKRNVDDNPVL--ADGSEIPGTSDKLPVD-SVPEDGFEKELMGLTGG 124
           RGLCNGE+G+++EL+RN++D      A+ +E    SD   +   VPEDGFEKE+MGLTGG
Sbjct: 64  RGLCNGEKGIEKELQRNIEDEQETSKAENNETERESDDSNLSFKVPEDGFEKEMMGLTGG 123

Query: 125 FPGGEKGLKKFISEN--PPPRKSSASKSGEIGSIINTQKPKPPDLPLLLPGMIAIVKNPN 184
           FPGGEKGLK FI +N  PPP    A +  +  ++   +KPK P LPLL+PGMIAIVKN N
Sbjct: 124 FPGGEKGLKTFIEKNPPPPPPPPPAKQGSDASAVATDKKPKAPKLPLLMPGMIAIVKNQN 183

Query: 185 NPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSAVLEPLLQ 240
           +PY+MYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPP KNPKS +LEPL++
Sbjct: 184 SPYHMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPGKNPKSCILEPLIE 242

The following BLAST results are available for this feature:

BLAST of CSPI04G06400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0A4	8.3e-70	57.26	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana ...	[more]

BLAST of CSPI04G06400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV29	1.4e-128	97.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052580 PE=4 SV=1	[more]
A0A5D3CYY1	2.0e-127	94.58	NAD(P)H-quinone oxidoreductase subunit S OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BSR5	2.0e-127	94.58	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A6J1IWU0	7.0e-104	81.82	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1FWM0	6.6e-102	80.99	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Cucurbita moschata OX...	[more]

BLAST of CSPI04G06400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148998.1	1.3e-133	99.59	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis sativus] >KAE86...	[more]
XP_008451952.1	4.2e-127	94.58	PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucumis melo...	[more]
XP_038902579.1	3.4e-113	87.65	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Benincasa hispida] >XP_...	[more]
XP_023553886.1	6.5e-104	82.23	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita pepo subsp. p...	[more]
XP_022982522.1	1.4e-103	81.82	NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Cucurbita maxima]	[more]

BLAST of CSPI04G06400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23890.1	5.9e-71	57.26	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021659	NADH dehydrogenase-like complex, subunit S	PFAM	PF11623	NdhS	coord: 166..217 e-value: 9.2E-29 score: 98.8
IPR021659	NADH dehydrogenase-like complex, subunit S	PANTHER	PTHR35494	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC	coord: 3..241
None	No IPR available	GENE3D	2.30.30.140		coord: 161..230 e-value: 5.7E-33 score: 114.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..159
None	No IPR available	PANTHER	PTHR35494:SF1	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC	coord: 3..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G06400.1	CSPI04G06400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)