CSPI03G36800 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G36800
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionArabinogalactan peptide 23
LocationChr3: 31940061 .. 31940240 (+)
RNA-Seq ExpressionCSPI03G36800
SyntenyCSPI03G36800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGTGACCTGTGCCGTCCTTGTTGCCGCTGCCGCCGTGAGTGCTACTATGGCTGTCAGTGAAGGGCCAGCTGCCGCGCCAGCTGCCGCACCTGGCCCATCCTCCGATGCAGCTGCTGCTTTGCCAGCTGTTGGAGCCTTCATTGGTGCTTCTCTCCTATCTTTCTTTGCCTACTACTTG

mRNA sequence

CAGGTGACCTGTGCCGTCCTTGTTGCCGCTGCCGCCGTGAGTGCTACTATGGCTGTCAGTGAAGGGCCAGCTGCCGCGCCAGCTGCCGCACCTGGCCCATCCTCCGATGCAGCTGCTGCTTTGCCAGCTGTTGGAGCCTTCATTGGTGCTTCTCTCCTATCTTTCTTTGCCTACTACTTG

Coding sequence (CDS)

CAGGTGACCTGTGCCGTCCTTGTTGCCGCTGCCGCCGTGAGTGCTACTATGGCTGTCAGTGAAGGGCCAGCTGCCGCGCCAGCTGCCGCACCTGGCCCATCCTCCGATGCAGCTGCTGCTTTGCCAGCTGTTGGAGCCTTCATTGGTGCTTCTCTCCTATCTTTCTTTGCCTACTACTTG

Protein sequence

QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL
Homology
BLAST of CSPI03G36800 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-04
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL 60
          ++ C VL AAA+++A MA  E      A APGP+S A+AALPA+G+ +GASL+S F+YYL
Sbjct: 5  KIACGVLFAAASMTAVMAAEE----VGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

BLAST of CSPI03G36800 vs. ExPASy TrEMBL
Match: A0A5D3DQ83 (Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005730 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL 60
          +VTCAVLVAAAAVSATMA SEGPA AP+     SSDA AALPAVGAFIGASL+SFFAYYL
Sbjct: 5  KVTCAVLVAAAAVSATMATSEGPAPAPSL----SSDATAALPAVGAFIGASLVSFFAYYL 60

BLAST of CSPI03G36800 vs. ExPASy TrEMBL
Match: A0A2I0IUW3 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_031820 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.9e-06
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL 60
          +++CA+LV AA++SA +A +EGPAAAP  APGPSS A+AALPAVG+ +GAS+LSF AYYL
Sbjct: 5  KISCAILVVAASLSAALA-AEGPAAAP--APGPSSGASAALPAVGSLVGASVLSFLAYYL 61

BLAST of CSPI03G36800 vs. ExPASy TrEMBL
Match: A0A1R3GYJ0 (Arabinogalactan peptide 23-like protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22445 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 36/60 (60.00%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL 60
          +++CAV+VAAA++SA +A  +    APAAAPGP+SDAA+ALP +G+ +GASL+SF AYYL
Sbjct: 5  KISCAVIVAAASMSAALAAGD----APAAAPGPASDAASALPVIGSVVGASLVSFLAYYL 60

BLAST of CSPI03G36800 vs. ExPASy TrEMBL
Match: V7AHI5 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G150500g PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYY 60
          +VTCA+L+AAA+VSATMA +E     PA APGPSS A+AA P VG+ +GAS+LSFFA +
Sbjct: 5  KVTCAILIAAASVSATMAAAE----VPAPAPGPSSGASAAFPLVGSLVGASVLSFFALF 59

BLAST of CSPI03G36800 vs. ExPASy TrEMBL
Match: A0A7N0T679 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL 60
          +V CA LVAAA+++A +AV      APAAAPGPSSDA+AA+PA+G+ +GA++ SFFA+Y+
Sbjct: 5  KVACAALVAAASMTAVLAVE-----APAAAPGPSSDASAAIPAIGSLVGAAVASFFAFYM 59

BLAST of CSPI03G36800 vs. NCBI nr
Match: KAA0043704.1 (Arabinogalactan peptide 23 [Cucumis melo var. makuwa] >TYK25430.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 3.3e-09
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL 60
          +VTCAVLVAAAAVSATMA SEGPA AP+     SSDA AALPAVGAFIGASL+SFFAYYL
Sbjct: 5  KVTCAVLVAAAAVSATMATSEGPAPAPSL----SSDATAALPAVGAFIGASLVSFFAYYL 60

BLAST of CSPI03G36800 vs. NCBI nr
Match: KGN59476.2 (hypothetical protein Csa_001154 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAV 45
          +VTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPA+
Sbjct: 5  KVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAM 48

BLAST of CSPI03G36800 vs. NCBI nr
Match: XP_038906349.1 (arabinogalactan protein 23 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 9.1e-07
Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSD-AAAALPAVGAFIGASLLSFFAYY 60
          +VTCAVLV+AA +SATMA  EG    PA APG SSD AAAALPAVGAFIGASL SFFAYY
Sbjct: 5  KVTCAVLVSAAVMSATMASGEG----PAPAPGLSSDAAAAALPAVGAFIGASLASFFAYY 61

BLAST of CSPI03G36800 vs. NCBI nr
Match: PKI47791.1 (hypothetical protein CRG98_031820 [Punica granatum])

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05
Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL 60
          +++CA+LV AA++SA +A +EGPAAAP  APGPSS A+AALPAVG+ +GAS+LSF AYYL
Sbjct: 5  KISCAILVVAASLSAALA-AEGPAAAP--APGPSSGASAALPAVGSLVGASVLSFLAYYL 61

BLAST of CSPI03G36800 vs. NCBI nr
Match: OMO63159.1 (arabinogalactan peptide 23-like protein [Corchorus capsularis])

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05
Identity = 36/60 (60.00%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL 60
          +++CAV+VAAA++SA +A  +    APAAAPGP+SDAA+ALP +G+ +GASL+SF AYYL
Sbjct: 5  KISCAVIVAAASMSAALAAGD----APAAAPGPASDAASALPVIGSVVGASLVSFLAYYL 60

BLAST of CSPI03G36800 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 45.8 bits (107), Expect = 1.4e-05
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL 60
          ++ C VL AAA+++A MA  E      A APGP+S A+AALPA+G+ +GASL+S F+YYL
Sbjct: 5  KIACGVLFAAASMTAVMAAEE----VGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

BLAST of CSPI03G36800 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 39.7 bits (91), Expect = 1.0e-03
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0

Query: 1  QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGP-SSDAAAALPAVGAFIGASLLSFFAYY 60
          ++ C V+ AAA+++A MA   G     A APGP +S A+ A+PA+G+ +GASL+S FAYY
Sbjct: 5  KIACGVVFAAASMTAVMAAEVG-----APAPGPAASGASVAVPALGSLVGASLVSLFAYY 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8S2W42.0e-0453.33Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2[more]
Match NameE-valueIdentityDescription
A0A5D3DQ831.6e-0981.67Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A2I0IUW34.9e-0666.67Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_031820 PE=4 SV=1[more]
A0A1R3GYJ01.8e-0560.00Arabinogalactan peptide 23-like protein OS=Corchorus capsularis OX=210143 GN=CCA... [more]
V7AHI57.0e-0562.71Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G150500g PE=4 ... [more]
A0A7N0T6791.2e-0458.33Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0043704.13.3e-0981.67Arabinogalactan peptide 23 [Cucumis melo var. makuwa] >TYK25430.1 Arabinogalacta... [more]
KGN59476.21.8e-0795.45hypothetical protein Csa_001154 [Cucumis sativus][more]
XP_038906349.19.1e-0777.05arabinogalactan protein 23 [Benincasa hispida][more]
PKI47791.11.0e-0566.67hypothetical protein CRG98_031820 [Punica granatum][more]
OMO63159.13.8e-0560.00arabinogalactan peptide 23-like protein [Corchorus capsularis][more]
Match NameE-valueIdentityDescription
AT3G57690.11.4e-0553.33arabinogalactan protein 23 [more]
AT2G41905.11.0e-0349.18BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044702Arabinogalactan protein 23/40PANTHERPTHR34672POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102coord: 2..60
NoneNo IPR availablePANTHERPTHR34672:SF2ARABINOGALACTAN PROTEIN 23coord: 2..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G36800.1CSPI03G36800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane