CSPI03G36800 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CAGGTGACCTGTGCCGTCCTTGTTGCCGCTGCCGCCGTGAGTGCTACTATGGCTGTCAGTGAAGGGCCAGCTGCCGCGCCAGCTGCCGCACCTGGCCCATCCTCCGATGCAGCTGCTGCTTTGCCAGCTGTTGGAGCCTTCATTGGTGCTTCTCTCCTATCTTTCTTTGCCTACTACTTG CAGGTGACCTGTGCCGTCCTTGTTGCCGCTGCCGCCGTGAGTGCTACTATGGCTGTCAGTGAAGGGCCAGCTGCCGCGCCAGCTGCCGCACCTGGCCCATCCTCCGATGCAGCTGCTGCTTTGCCAGCTGTTGGAGCCTTCATTGGTGCTTCTCTCCTATCTTTCTTTGCCTACTACTTG CAGGTGACCTGTGCCGTCCTTGTTGCCGCTGCCGCCGTGAGTGCTACTATGGCTGTCAGTGAAGGGCCAGCTGCCGCGCCAGCTGCCGCACCTGGCCCATCCTCCGATGCAGCTGCTGCTTTGCCAGCTGTTGGAGCCTTCATTGGTGCTTCTCTCCTATCTTTCTTTGCCTACTACTTG QVTCAVLVAAAAVSATMAVSEGPAAAPAAAPGPSSDAAAALPAVGAFIGASLLSFFAYYL Homology
BLAST of CSPI03G36800 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2) HSP 1 Score: 45.8 bits (107), Expect = 2.0e-04 Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0
BLAST of CSPI03G36800 vs. ExPASy TrEMBL
Match: A0A5D3DQ83 (Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005730 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09 Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 0
BLAST of CSPI03G36800 vs. ExPASy TrEMBL
Match: A0A2I0IUW3 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_031820 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 4.9e-06 Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0
BLAST of CSPI03G36800 vs. ExPASy TrEMBL
Match: A0A1R3GYJ0 (Arabinogalactan peptide 23-like protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22445 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05 Identity = 36/60 (60.00%), Postives = 50/60 (83.33%), Query Frame = 0
BLAST of CSPI03G36800 vs. ExPASy TrEMBL
Match: V7AHI5 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G150500g PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05 Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0
BLAST of CSPI03G36800 vs. ExPASy TrEMBL
Match: A0A7N0T679 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04 Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 0
BLAST of CSPI03G36800 vs. NCBI nr
Match: KAA0043704.1 (Arabinogalactan peptide 23 [Cucumis melo var. makuwa] >TYK25430.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa]) HSP 1 Score: 71.2 bits (173), Expect = 3.3e-09 Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 0
BLAST of CSPI03G36800 vs. NCBI nr
Match: KGN59476.2 (hypothetical protein Csa_001154 [Cucumis sativus]) HSP 1 Score: 65.5 bits (158), Expect = 1.8e-07 Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 0
BLAST of CSPI03G36800 vs. NCBI nr
Match: XP_038906349.1 (arabinogalactan protein 23 [Benincasa hispida]) HSP 1 Score: 63.2 bits (152), Expect = 9.1e-07 Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 0
BLAST of CSPI03G36800 vs. NCBI nr
Match: PKI47791.1 (hypothetical protein CRG98_031820 [Punica granatum]) HSP 1 Score: 59.7 bits (143), Expect = 1.0e-05 Identity = 40/60 (66.67%), Postives = 52/60 (86.67%), Query Frame = 0
BLAST of CSPI03G36800 vs. NCBI nr
Match: OMO63159.1 (arabinogalactan peptide 23-like protein [Corchorus capsularis]) HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05 Identity = 36/60 (60.00%), Postives = 50/60 (83.33%), Query Frame = 0
BLAST of CSPI03G36800 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 ) HSP 1 Score: 45.8 bits (107), Expect = 1.4e-05 Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 0
BLAST of CSPI03G36800 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 39.7 bits (91), Expect = 1.0e-03 Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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