CSPI03G34590 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G34590
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 30391295 .. 30391612 (+)
RNA-Seq Expression	CSPI03G34590
Synteny	CSPI03G34590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAGGTAGGAATCAAATTTTTCGTCCAATATAAGTCGGGTTTCAAGTTGGAATGGCCAAGCCGAATCAAGAACTTAACCCTCGGTTGAATGGAGAAACAAAAAAGAAGCAACAAAGAGAAGAAAAAGCATTTGATGGGCGTTAGCGTGGCGGCGTAA

mRNA sequence

ATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAGAAACAAAAAAGAAGCAACAAAGAGAAGAAAAAGCATTTGATGGGCGTTAGCGTGGCGGCGTAA

Coding sequence (CDS)

ATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAGAAACAAAAAAGAAGCAACAAAGAGAAGAAAAAGCATTTGATGGGCGTTAGCGTGGCGGCGTAA

Protein sequence

MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRKKQKRSNKEKKKHLMGVSVAA*

Homology

[Close]

BLAST of CSPI03G34590 vs. ExPASy TrEMBL
Match: A0A0A0LEI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769630 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.6e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRKKQKRS 60
          MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRKKQKRS
Sbjct: 1  MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRKKQKRS 60

Query: 61 NKEKKKHLMGVSVAA 76
          NKEKKKHLMGVSVAA
Sbjct: 61 NKEKKKHLMGVSVAA 75

[Close]

BLAST of CSPI03G34590 vs. ExPASy TrEMBL
Match: A0A5A7U3B5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00100 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-17
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1  MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 56
          M  R TNGREKK GFVGYLRNVSWKLKQRLAMAFNRL+EGLAFERDGGA QGLRK
Sbjct: 1  MNLRITNGREKKQGFVGYLRNVSWKLKQRLAMAFNRLKEGLAFERDGGALQGLRK 55

[Close]

BLAST of CSPI03G34590 vs. NCBI nr
Match: KAE8645985.1 (hypothetical protein Csa_015487, partial [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 5.7e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 56
          MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK
Sbjct: 14 MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 68

[Close]

BLAST of CSPI03G34590 vs. NCBI nr
Match: KAA0048726.1 (hypothetical protein E6C27_scaffold43G00200 [Cucumis melo var. makuwa] >TYK07900.1 hypothetical protein E5676_scaffold265G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-17
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1  MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 56
          M  R TNGREKK GFVGYLRNVSWKLKQRLAMAFNRL+EGLAFERDGGA QGLRK
Sbjct: 1  MNLRITNGREKKQGFVGYLRNVSWKLKQRLAMAFNRLKEGLAFERDGGALQGLRK 55

The following BLAST results are available for this feature:

BLAST of CSPI03G34590 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G34590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEI0	2.6e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769630 PE=4 SV=1	[more]
A0A5A7U3B5	1.2e-17	89.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI03G34590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645985.1	5.7e-22	100.00	hypothetical protein Csa_015487, partial [Cucumis sativus]	[more]
KAA0048726.1	2.5e-17	89.09	hypothetical protein E6C27_scaffold43G00200 [Cucumis melo var. makuwa] >TYK07900...	[more]

BLAST of CSPI03G34590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G34590.1	CSPI03G34590.1	mRNA