CSPI03G34470 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G34470
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 30247293 .. 30247493 (+)
RNA-Seq Expression	CSPI03G34470
Synteny	CSPI03G34470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGGATAGTAAGGAAACCTTCCCTTCTGCGTCAGCTGACAGTCCCAATTCTCAAATTTCCACCAAGTCTGAAACACCAAAAGCCTCATATAGATCCAAAAACAAGTCACCTTCCCTACCTGCCAAAATTATATTCATCCCTTCTTCACCAAAGCAAGATTCAACTAAAAATCTCGTCATTGTTGCTTATGACCCA

mRNA sequence

ATGGCCAAGGATAGTAAGGAAACCTTCCCTTCTGCGTCAGCTGACAGTCCCAATTCTCAAATTTCCACCAAGTCTGAAACACCAAAAGCCTCATATAGATCCAAAAACAAGTCACCTTCCCTACCTGCCAAAATTATATTCATCCCTTCTTCACCAAAGCAAGATTCAACTAAAAATCTCGTCATTGTTGCTTATGACCCA

Coding sequence (CDS)

ATGGCCAAGGATAGTAAGGAAACCTTCCCTTCTGCGTCAGCTGACAGTCCCAATTCTCAAATTTCCACCAAGTCTGAAACACCAAAAGCCTCATATAGATCCAAAAACAAGTCACCTTCCCTACCTGCCAAAATTATATTCATCCCTTCTTCACCAAAGCAAGATTCAACTAAAAATCTCGTCATTGTTGCTTATGACCCA

Protein sequence

MAKDSKETFPSASADSPNSQISTKSETPKASYRSKNKSPSLPAKIIFIPSSPKQDSTKNLVIVAYDP

Homology

[Close]

BLAST of CSPI03G34470 vs. ExPASy TrEMBL
Match: A0A0A0LBB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G765060 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-24
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MAKDSKETFPSASADSPNSQISTKSETPKASYRSKNKSPSLPAKIIFIPSSPKQDSTKNL 60
          MAKDSKETFPSASADSPNSQISTKSETPKASYRSKNKSPSL AKIIFIPSSPKQDSTKNL
Sbjct: 1  MAKDSKETFPSASADSPNSQISTKSETPKASYRSKNKSPSLRAKIIFIPSSPKQDSTKNL 60

Query: 61 VIVAYDP 68
          VIVAYDP
Sbjct: 61 VIVAYDP 67

[Close]

BLAST of CSPI03G34470 vs. NCBI nr
Match: KAE8645994.1 (hypothetical protein Csa_015474 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 3.1e-24
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MAKDSKETFPSASADSPNSQISTKSETPKASYRSKNKSPSLPAKIIFIPSSPKQDSTKNL 60
          MAKDSKETFPSASADSPNSQISTKSETPKASYRSKNKSPSL AKIIFIPSSPKQDSTKNL
Sbjct: 1  MAKDSKETFPSASADSPNSQISTKSETPKASYRSKNKSPSLRAKIIFIPSSPKQDSTKNL 60

Query: 61 VIVAYDP 68
          VIVAYDP
Sbjct: 61 VIVAYDP 67

The following BLAST results are available for this feature:

BLAST of CSPI03G34470 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G34470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBB7	1.5e-24	98.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G765060 PE=4 SV=1	[more]

BLAST of CSPI03G34470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645994.1	3.1e-24	98.51	hypothetical protein Csa_015474 [Cucumis sativus]	[more]

BLAST of CSPI03G34470 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G34470.1	CSPI03G34470.1	mRNA