CSPI03G23630 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G23630
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr3: 20598566 .. 20598970 (+)
RNA-Seq Expression	CSPI03G23630
Synteny	CSPI03G23630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTTCGGAGGGGGAAGAAACAGATTATCTTAAAGGGAGATCCTTCACTTATTAGGGCTGAGTGTTCTCTGAAAACCATTGAAAAAACATGGGAAGAGGACGACCAAGGCTTCTTACTAGAAATGCAGAGCTATGAGGCAGAGGAAGATGGAGAATTGGATGAAGTACAGAGAGTGAAGGGGGATGAGGAAGAATCTCCAATGATTCAATTCTTACTCCAGCAGTACACGGATTTATTTGAAGAACCTAAGGGATTACCACCAAAAAGGGAGTGTGACCATCGTATTTTGCTGTTACCCGGCCAGAAACCTATCAATGTGAGACCTTACAAATACGGCCACACACAAAAAGAAGAAATTGAGAAGTTTGTATCCGAAATGCTCCAAGTTGGGATAATATGA

mRNA sequence

ATGACATTTCGGAGGGGGAAGAAACAGATTATCTTAAAGGGAGATCCTTCACTTATTAGGGCTGAGTGTTCTCTGAAAACCATTGAAAAAACATGGGAAGAGGACGACCAAGGCTTCTTACTAGAAATGCAGAGCTATGAGGCAGAGGAAGATGGAGAATTGGATGAAGTACAGAGAGTGAAGGGGGATGAGGAAGAATCTCCAATGATTCAATTCTTACTCCAGCAGTACACGGATTTATTTGAAGAACCTAAGGGATTACCACCAAAAAGGGAGTGTGACCATCGTATTTTGCTGTTACCCGGCCAGAAACCTATCAATGTGAGACCTTACAAATACGGCCACACACAAAAAGAAGAAATTGAGAAGTTTGTATCCGAAATGCTCCAAGTTGGGATAATATGA

Coding sequence (CDS)

ATGACATTTCGGAGGGGGAAGAAACAGATTATCTTAAAGGGAGATCCTTCACTTATTAGGGCTGAGTGTTCTCTGAAAACCATTGAAAAAACATGGGAAGAGGACGACCAAGGCTTCTTACTAGAAATGCAGAGCTATGAGGCAGAGGAAGATGGAGAATTGGATGAAGTACAGAGAGTGAAGGGGGATGAGGAAGAATCTCCAATGATTCAATTCTTACTCCAGCAGTACACGGATTTATTTGAAGAACCTAAGGGATTACCACCAAAAAGGGAGTGTGACCATCGTATTTTGCTGTTACCCGGCCAGAAACCTATCAATGTGAGACCTTACAAATACGGCCACACACAAAAAGAAGAAATTGAGAAGTTTGTATCCGAAATGCTCCAAGTTGGGATAATATGA

Protein sequence

MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEEDGELDEVQRVKGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQKEEIEKFVSEMLQVGII*

Homology

[Close]

BLAST of CSPI03G23630 vs. ExPASy TrEMBL
Match: A0A5D3C0M4 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00270 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.4e-45
Identity = 95/136 (69.85%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 1   MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYE--AEEDGELDEVQ 60
           MTF    KQI+LKGDPSLI+ EC+LKTIEKTWE+DDQGFLLE  ++E   E     ++ Q
Sbjct: 73  MTFWDKGKQIVLKGDPSLIKVECALKTIEKTWEDDDQGFLLEWTNFETTTENKDGYEKNQ 132

Query: 61  RVKGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQK 120
           +V+GDE + PMI+FLLQQY D+FE PK LPPKRE DHRIL +PGQ+PINVRPYKYGH QK
Sbjct: 133 QVRGDEADIPMIKFLLQQYADIFEAPKTLPPKREIDHRILTMPGQRPINVRPYKYGHVQK 192

Query: 121 EEIEKFVSEMLQVGII 135
           EEIEK VSEMLQ GII
Sbjct: 193 EEIEKLVSEMLQTGII 208

[Close]

BLAST of CSPI03G23630 vs. ExPASy TrEMBL
Match: A0A1S4E096 (uncharacterized protein LOC103495179 OS=Cucumis melo OX=3656 GN=LOC103495179 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.1e-45
Identity = 90/134 (67.16%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEEDGELDEVQRV 60
           MTF    +QI+LKGDPSLI+AECSLKTIEKTWE+DD+GFLLE  ++E   D   ++ Q +
Sbjct: 266 MTFWNEGRQIVLKGDPSLIKAECSLKTIEKTWEDDDRGFLLEWTNFEMTADDGYEKNQEM 325

Query: 61  KGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQKEE 120
           +GDE + PMI+FLL QY D+FE PKGLPPKRE D+RIL LP Q+PIN RPYKYGH QKEE
Sbjct: 326 RGDEADIPMIRFLLHQYADIFETPKGLPPKREIDYRILTLPEQRPINARPYKYGHVQKEE 385

Query: 121 IEKFVSEMLQVGII 135
           IEK V+EMLQ G+I
Sbjct: 386 IEKLVAEMLQTGVI 399

[Close]

BLAST of CSPI03G23630 vs. ExPASy TrEMBL
Match: A0A5D3E328 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00480 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.1e-45
Identity = 90/134 (67.16%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEEDGELDEVQRV 60
           MTF    +QI+LKGDPSLI+AECSLKTIEKTWE+DD+GFLLE  ++E   D   ++ Q +
Sbjct: 266 MTFWNEGRQIVLKGDPSLIKAECSLKTIEKTWEDDDRGFLLEWTNFEMTADDGYEKNQEM 325

Query: 61  KGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQKEE 120
           +GDE + PMI+FLL QY D+FE PKGLPPKRE D+RIL LP Q+PIN RPYKYGH QKEE
Sbjct: 326 RGDEADIPMIRFLLHQYADIFETPKGLPPKREIDYRILTLPEQRPINARPYKYGHVQKEE 385

Query: 121 IEKFVSEMLQVGII 135
           IEK V+EMLQ G+I
Sbjct: 386 IEKLVAEMLQTGVI 399

[Close]

BLAST of CSPI03G23630 vs. ExPASy TrEMBL
Match: A0A5A7TKE8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001100 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.2e-44
Identity = 90/134 (67.16%), Postives = 107/134 (79.85%), Query Frame = 0


Query: 1   MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEEDGELDEVQRV 60
           M F  G+ +++LKGDPSLIRAECSLKTIEKTWE +DQGFL+E Q+YE E+D    + Q  
Sbjct: 299 MVFWNGESKVVLKGDPSLIRAECSLKTIEKTWESEDQGFLIEWQNYETEDDFRGSKTQNP 358

Query: 61  KGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQKEE 120
           +G+EE+ PMI+FLL QY+DLF+ PK LPPKR  DH IL LP QKPINVRPYKYGH QKEE
Sbjct: 359 QGEEEDLPMIRFLLSQYSDLFDTPKTLPPKRHIDHHILTLPEQKPINVRPYKYGHAQKEE 418

Query: 121 IEKFVSEMLQVGII 135
           IEK V++MLQ  II
Sbjct: 419 IEKLVADMLQTEII 432

[Close]

BLAST of CSPI03G23630 vs. ExPASy TrEMBL
Match: A0A5A7U4B9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002190 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.0e-44
Identity = 89/134 (66.42%), Postives = 107/134 (79.85%), Query Frame = 0


Query: 1   MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEEDGELDEVQRV 60
           M F +   +++LKGDP+LIRAECSLKT+EKTWEE+DQGFL++ Q YE E D +  +    
Sbjct: 429 MVFWKEGNKVVLKGDPALIRAECSLKTLEKTWEEEDQGFLIDWQDYETENDYKESKTPGQ 488

Query: 61  KGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQKEE 120
           +GDEEE PMIQFLL QY+D+F+ PK LPPKR  DHRI  +PGQKPINVRPYKYGH Q+EE
Sbjct: 489 QGDEEELPMIQFLLNQYSDVFDIPKTLPPKRAVDHRIFTMPGQKPINVRPYKYGHNQEEE 548

Query: 121 IEKFVSEMLQVGII 135
           IEK V+EMLQ GII
Sbjct: 549 IEKLVTEMLQTGII 562

[Close]

BLAST of CSPI03G23630 vs. NCBI nr
Match: XP_031745528.1 (uncharacterized protein LOC116405915 [Cucumis sativus])

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEEDGELDEVQRV 60
           MTFR GKKQ ILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQ+YEAEEDGELDEVQRV
Sbjct: 492 MTFRMGKKQFILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQNYEAEEDGELDEVQRV 551

Query: 61  KGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQKEE 120
           KGDEEESPMIQ LLQQYTDLFEEPKGLPPKRECDHRILL+ GQKPINVRPYKYGHTQKEE
Sbjct: 552 KGDEEESPMIQVLLQQYTDLFEEPKGLPPKRECDHRILLVTGQKPINVRPYKYGHTQKEE 611

Query: 121 IEKFVSEMLQVGII 135
           IEK +SEMLQVGII
Sbjct: 612 IEKLISEMLQVGII 625

[Close]

BLAST of CSPI03G23630 vs. NCBI nr
Match: XP_031744430.1 (uncharacterized protein LOC116405043 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.0e-45
Identity = 96/134 (71.64%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEEDGELDEVQRV 60
           M+F  GK++IILKGDPSLI+AECSLKTIEKTWE +DQGFLLE Q YE   D E++  Q +
Sbjct: 492 MSFWLGKQKIILKGDPSLIQAECSLKTIEKTWENEDQGFLLEFQKYEV--DTEVEVEQEM 551

Query: 61  KGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQKEE 120
           K DEEE PMI+ LLQQY D+FE+PK LPPKRE DHRIL+LP Q+PINVRPYKYG+ QKEE
Sbjct: 552 KRDEEEIPMIKNLLQQYADIFEDPKKLPPKREIDHRILVLPNQRPINVRPYKYGYVQKEE 611

Query: 121 IEKFVSEMLQVGII 135
           IEK V EMLQ G+I
Sbjct: 612 IEKLVVEMLQAGVI 623

[Close]

BLAST of CSPI03G23630 vs. NCBI nr
Match: KAA0063771.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK05523.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 2.9e-45
Identity = 95/136 (69.85%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 1   MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYE--AEEDGELDEVQ 60
           MTF    KQI+LKGDPSLI+ EC+LKTIEKTWE+DDQGFLLE  ++E   E     ++ Q
Sbjct: 73  MTFWDKGKQIVLKGDPSLIKVECALKTIEKTWEDDDQGFLLEWTNFETTTENKDGYEKNQ 132

Query: 61  RVKGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQK 120
           +V+GDE + PMI+FLLQQY D+FE PK LPPKRE DHRIL +PGQ+PINVRPYKYGH QK
Sbjct: 133 QVRGDEADIPMIKFLLQQYADIFEAPKTLPPKREIDHRILTMPGQRPINVRPYKYGHVQK 192

Query: 121 EEIEKFVSEMLQVGII 135
           EEIEK VSEMLQ GII
Sbjct: 193 EEIEKLVSEMLQTGII 208

[Close]

BLAST of CSPI03G23630 vs. NCBI nr
Match: KAE8637561.1 (hypothetical protein CSA_017659 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 6.5e-45
Identity = 95/134 (70.90%), Postives = 111/134 (82.84%), Query Frame = 0


Query: 1   MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEEDGELDEVQRV 60
           M+F  GK++IILKGDPSLI+AEC LKTIEKTWE +DQGFLLE Q YE + D E+   Q +
Sbjct: 113 MSFWSGKQKIILKGDPSLIQAECFLKTIEKTWENEDQGFLLEFQRYEIDTDVEVK--QAM 172

Query: 61  KGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQKEE 120
           KGDEEE PMI+ LLQQY ++FE+PK LPPKRE DHRIL+LP Q+PINVRPYKYG+ QKEE
Sbjct: 173 KGDEEEIPMIKNLLQQYANIFEDPKKLPPKREIDHRILVLPDQRPINVRPYKYGYVQKEE 232

Query: 121 IEKFVSEMLQVGII 135
           IEK V EMLQ G+I
Sbjct: 233 IEKLVVEMLQAGVI 244

[Close]

BLAST of CSPI03G23630 vs. NCBI nr
Match: XP_016901651.1 (PREDICTED: uncharacterized protein LOC103495179 [Cucumis melo] >XP_016901652.1 PREDICTED: uncharacterized protein LOC103495179 [Cucumis melo] >XP_016901653.1 PREDICTED: uncharacterized protein LOC103495179 [Cucumis melo] >XP_016901654.1 PREDICTED: uncharacterized protein LOC103495179 [Cucumis melo] >XP_016901655.1 PREDICTED: uncharacterized protein LOC103495179 [Cucumis melo] >XP_016901656.1 PREDICTED: uncharacterized protein LOC103495179 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 1.9e-44
Identity = 90/134 (67.16%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MTFRRGKKQIILKGDPSLIRAECSLKTIEKTWEEDDQGFLLEMQSYEAEEDGELDEVQRV 60
           MTF    +QI+LKGDPSLI+AECSLKTIEKTWE+DD+GFLLE  ++E   D   ++ Q +
Sbjct: 266 MTFWNEGRQIVLKGDPSLIKAECSLKTIEKTWEDDDRGFLLEWTNFEMTADDGYEKNQEM 325

Query: 61  KGDEEESPMIQFLLQQYTDLFEEPKGLPPKRECDHRILLLPGQKPINVRPYKYGHTQKEE 120
           +GDE + PMI+FLL QY D+FE PKGLPPKRE D+RIL LP Q+PIN RPYKYGH QKEE
Sbjct: 326 RGDEADIPMIRFLLHQYADIFETPKGLPPKREIDYRILTLPEQRPINARPYKYGHVQKEE 385

Query: 121 IEKFVSEMLQVGII 135
           IEK V+EMLQ G+I
Sbjct: 386 IEKLVAEMLQTGVI 399

The following BLAST results are available for this feature:

BLAST of CSPI03G23630 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G23630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0M4	1.4e-45	69.85	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00270 ...	[more]
A0A1S4E096	9.1e-45	67.16	uncharacterized protein LOC103495179 OS=Cucumis melo OX=3656 GN=LOC103495179 PE=...	[more]
A0A5D3E328	9.1e-45	67.16	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold34...	[more]
A0A5A7TKE8	1.2e-44	67.16	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4B9	2.0e-44	66.42	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CSPI03G23630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745528.1	5.6e-65	94.03	uncharacterized protein LOC116405915 [Cucumis sativus]	[more]
XP_031744430.1	1.0e-45	71.64	uncharacterized protein LOC116405043 [Cucumis sativus]	[more]
KAA0063771.1	2.9e-45	69.85	peroxidase 64 [Cucumis melo var. makuwa] >TYK05523.1 peroxidase 64 [Cucumis melo...	[more]
KAE8637561.1	6.5e-45	70.90	hypothetical protein CSA_017659 [Cucumis sativus]	[more]
XP_016901651.1	1.9e-44	67.16	PREDICTED: uncharacterized protein LOC103495179 [Cucumis melo] >XP_016901652.1 P...	[more]

BLAST of CSPI03G23630 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 84..134 e-value: 6.8E-8 score: 34.6
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 1..134
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..134
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 73..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G23630.1	CSPI03G23630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity