CSPI03G23540 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G23540
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
LocationChr3: 20447025 .. 20447318 (+)
RNA-Seq ExpressionCSPI03G23540
SyntenyCSPI03G23540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGAAAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCCGTGTAATGCAATGTCCTCAGGACATAAAAGAAGTTTTGGCTGTATTTTTATTACAAAGAGATAAAGATTGGTGA

mRNA sequence

ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGAAAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCCGTGTAATGCAATGTCCTCAGGACATAAAAGAAGTTTTGGCTGTATTTTTATTACAAAGAGATAAAGATTGGTGA

Coding sequence (CDS)

ATGAACTCAGAGGCACATTCAGTTAATCTGAATGCGATGAAGGAACAAAAAGAAGTAGTATATGATAGAGTGACACAGAGATTAGTTGATATTATGGCACATCAACCAGAAAAGAAGTTTGGAATAGAGAGATTGAAGGCATTAGGAGCTACTGAGTTCACTGGAACAACCAAACCAGAAGAATTTGAAAAATGGATTAGGACTTTGGAGAAATGCTTCCGTGTAATGCAATGTCCTCAGGACATAAAAGAAGTTTTGGCTGTATTTTTATTACAAAGAGATAAAGATTGGTGA

Protein sequence

MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQRDKDW*
Homology
[Close]
BLAST of CSPI03G23540 vs. ExPASy TrEMBL
Match: A0A0A0L7X2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
          MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 61 EFEKWIRTLEKCFR 75
          EFEKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

[Close]
BLAST of CSPI03G23540 vs. ExPASy TrEMBL
Match: A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.4e-25
Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 0 

Query: 1   MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
           ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 5   IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61  EFEKWIRTLEKCFRVMQCPQDIKEVLAVF-LLQRDKDW 98
           E EKWIRTLEKCFRVMQCP++ +  LAVF LL+R +DW
Sbjct: 65  EAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDW 102

[Close]
BLAST of CSPI03G23540 vs. ExPASy TrEMBL
Match: A0A5D3CSN0 (A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00330 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.4e-24
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 4   EAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFE 63
           E H VN +  +EQ+E VYDRV Q ++D+M  Q EKKFGIERL+ALG TEFTGTT+P E +
Sbjct: 21  EVHLVNQDVRREQEETVYDRVAQWVIDVMTQQLEKKFGIERLEALGTTEFTGTTEPREAD 80

Query: 64  KWIRTLEKCFRVMQCPQDIKEVLAVFLLQRDK-DW 98
           K I+TLEKCFRV QC Q+ K  LA+FLLQ  K DW
Sbjct: 81  KRIKTLEKCFRVTQCSQERKVDLAMFLLQEYKEDW 115

[Close]
BLAST of CSPI03G23540 vs. ExPASy TrEMBL
Match: A0A5D3CDA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001250 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.7e-21
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
          M+ EAHS+N NA ++QKE +YDRV QRL+D++  QPEKKF IE+LKALGAT+F GTT P+
Sbjct: 18 MDLEAHSLNPNARRDQKEALYDRVAQRLIDVLTQQPEKKFQIEKLKALGATKFNGTTNPD 77

Query: 61 EFEKWIRTLEKCF 74
          E EKW RTLEKCF
Sbjct: 78 EAEKWSRTLEKCF 90

[Close]
BLAST of CSPI03G23540 vs. ExPASy TrEMBL
Match: A0A5D3DES5 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold991G00660 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 51/103 (49.51%), Postives = 66/103 (64.08%), Query Frame = 0 

Query: 3   SEAHSVNLNAMKEQKEVVYDRVTQRLVD-IMAHQ--PEKKFGIERLKALGATEFTGTTKP 62
           S+A S   +     +E + DR+ QRL+  I + Q  PEKK+GIERLKALGAT F GTT P
Sbjct: 47  SDAESSRPHVEGNMEEQLLDRLAQRLISGIRSAQSDPEKKYGIERLKALGATTFVGTTNP 106

Query: 63  EEFEKWIRTLEKCFRVMQCPQDIKEVLAVFLLQ-----RDKDW 98
            + E W+  +EKCFRV +CP+D K  LA FLLQ     + +DW
Sbjct: 107 ADAEAWLTLIEKCFRVTRCPEDRKVELASFLLQNGGGAKGEDW 149

[Close]
BLAST of CSPI03G23540 vs. NCBI nr
Match: KGN58005.1 (hypothetical protein Csa_009787 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 3.2e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
          MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE
Sbjct: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60

Query: 61 EFEKWIRTLEKCFR 75
          EFEKWIRTLEKCFR
Sbjct: 61 EFEKWIRTLEKCFR 74

[Close]
BLAST of CSPI03G23540 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 7.1e-25
Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 0 

Query: 1   MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
           ++SEAH++N NA +E++E +YDR  QRL++ +A Q +K FGIER+KALGATEF G    E
Sbjct: 5   IDSEAHALNPNARREEEEALYDRFAQRLINALAQQLKKNFGIERVKALGATEFNGIENHE 64

Query: 61  EFEKWIRTLEKCFRVMQCPQDIKEVLAVF-LLQRDKDW 98
           E EKWIRTLEKCFRVMQCP++ +  LAVF LL+R +DW
Sbjct: 65  EAEKWIRTLEKCFRVMQCPKERRVNLAVFLLLERAEDW 102

[Close]
BLAST of CSPI03G23540 vs. NCBI nr
Match: KAA0066608.1 (A-kinase anchor protein 12 [Cucumis melo var. makuwa] >TYK14208.1 A-kinase anchor protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 4   EAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFE 63
           E H VN +  +EQ+E VYDRV Q ++D+M  Q EKKFGIERL+ALG TEFTGTT+P E +
Sbjct: 21  EVHLVNQDVRREQEETVYDRVAQWVIDVMTQQLEKKFGIERLEALGTTEFTGTTEPREAD 80

Query: 64  KWIRTLEKCFRVMQCPQDIKEVLAVFLLQRDK-DW 98
           K I+TLEKCFRV QC Q+ K  LA+FLLQ  K DW
Sbjct: 81  KRIKTLEKCFRVTQCSQERKVDLAMFLLQEYKEDW 115

[Close]
BLAST of CSPI03G23540 vs. NCBI nr
Match: KAA0037861.1 (hypothetical protein E6C27_scaffold36G00200 [Cucumis melo var. makuwa] >TYK09821.1 hypothetical protein E5676_scaffold127G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 50/73 (68.49%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 1  MNSEAHSVNLNAMKEQKEVVYDRVTQRLVDIMAHQPEKKFGIERLKALGATEFTGTTKPE 60
          M+ EAHS+N NA ++QKE +YDRV QRL+D++  QPEKKF IE+LKALGAT+F GTT P+
Sbjct: 18 MDLEAHSLNPNARRDQKEALYDRVAQRLIDVLTQQPEKKFQIEKLKALGATKFNGTTNPD 77

Query: 61 EFEKWIRTLEKCF 74
          E EKW RTLEKCF
Sbjct: 78 EAEKWSRTLEKCF 90

[Close]
BLAST of CSPI03G23540 vs. NCBI nr
Match: XP_038896416.1 (uncharacterized protein LOC120084680 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 9.2e-17
Identity = 49/83 (59.04%), Postives = 61/83 (73.49%), Query Frame = 0 

Query: 20 VYDRVTQRL---VDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFRVM 79
          V+DR+TQRL   V  + + PEKKFGIERLKALGAT F GTT P + E W+  +EKCF+VM
Sbjct: 5  VFDRITQRLAASVGSIQNDPEKKFGIERLKALGATTFDGTTDPLDAEIWLGLIEKCFKVM 64

Query: 80 QCPQDIKEVLAVFLLQR--DKDW 98
          +CP+D K  LA FLLQ+  +K W
Sbjct: 65 RCPEDCKVELATFLLQKGVEKWW 87

The following BLAST results are available for this feature:
BLAST of CSPI03G23540 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G23540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7X21.5e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1[more]
A0A0A0LI313.4e-2561.22Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1[more]
A0A5D3CSN08.4e-2463.16A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5D3CDA46.7e-2168.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DES51.4e-1549.51DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of CSPI03G23540 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58005.13.2e-33100.00hypothetical protein Csa_009787 [Cucumis sativus][more]
KGN61535.17.1e-2561.22hypothetical protein Csa_006696 [Cucumis sativus][more]
KAA0066608.11.7e-2363.16A-kinase anchor protein 12 [Cucumis melo var. makuwa] >TYK14208.1 A-kinase ancho... [more]
KAA0037861.11.4e-2068.49hypothetical protein E6C27_scaffold36G00200 [Cucumis melo var. makuwa] >TYK09821... [more]
XP_038896416.19.2e-1759.04uncharacterized protein LOC120084680 [Benincasa hispida][more]
BLAST of CSPI03G23540 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G23540.1CSPI03G23540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0005488 binding
molecular_function GO:0003824 catalytic activity