CSPI03G21780 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTCAGAATAATGCAACTACTTCTACTGATGGTGTTGATACAAACTGTTACGAGGAGCAGAACACAGAACTGAATGACAATGAAATACTGAATGATGCTGCAATAGAACATACTGACAATGTTGTTATAATTGAAGTTGCAAATGAAGCCGACCGTAGTAGAAGCTGTGAGCCTACTGCAAATGATAGCAGCCGTGAACCTGCACCTGTCACACTCCATAGATCATCTCGGCAGTTATGTCTACCTTCATATCTTAGGGATTTCCATCACAACATGATTGGGAAGAAACATGTCACTTCAACAGCCCCCTATTTCTTTGGCAAATATCTTTCTTATGAATCTTATTCACCTAGACATAAACACTATTTGCTTAATGTGACTGTTTATGAACCTACCTTCTGTCACCCAGCTGTAAAGTTTCAGAATTGGAGAGATGATATGGTGAAGAAATAAATGCAATGGAACGTAACAAGACTTGGATAGTGACTTCATCGCCCAAAAGTCAACACATACTAGGAAGCAAATGGGTGTATAAAGTCAAATATCTTCCCGGTGGAACTGTTGATCGGTACAAGGTGCGCCTTATTGCTTAAGGCTATTATCAACAAGAAGGCATGGACTTTTTTGACACATTTCCTTCCGTGGCCTTTGTCACAGTAAAGGTATTTCTATCCTTAGTGACCTCCTTTAATTGGCAATTTATTCAAATGGATATTACCAATGCCTTTTTAAATGGAGACTTATTTGAAGAGATTTATATGTTCTTACCCATGAGATACAAGACAACTATAATACCAAATAAGGGGGAGAAGCTCGTTTGTCGATTGAATAAGTCAATATATGGCCTCAAACAAGCCTTTAAACAATGGTTTGTGAAGTTTTCTTCTGTATTGTCTACACATGGCTTCATCCAGTCAAAGTCCGACTAGGCTATATTCGTGGAAGTGGTGAAACCTTTGTTGCATTGTTAGTATAGATGGATAACATATTACCAATTGGACCTTCCCCGGATGAGATCAATGTTATCAAAAAGATCCTCAAAAGCCATTTTAAAGTTAAGGACTTGGGACAAACCAAATATTTCCTAGGATTAGAGTTATCTCGATCCAAACAAGGTTTGTTTCTATCACAATGAAAATATTCCCTTCAAATCCTTGAAGACACTGAATACCTTGCTGCGAAGCTTGCTTCATTACCTATGGATCCAAACATCAAGCTCTCAAAAGCCAACTAATACTCATCTGAATGCTGCTCATCACTTGTTGAAATATTTAAAACGCCAGGGCAAGGCATTTTGATTAAGCCAACTCACTAGTTTCATCTCAAGGCTTATGTTGACACTGATTGGGGGGCATGCCTTGACACTCGACAATCCATTTCAGGCTATTGTATTTTCTTAGGGAACTCATTAGTCTCATGGAAATCGAAGAAGCAAGTCACTGTTTCGAGATCATTTGCAGAGGCAGAATATATAGAGCCTTGGCATCTGTAATAAGTGAACTTATATGGATTTCTCAACTTCTAATTGATCTACACGTTCAACATATGTTACCAACAACTGTGTTTTGTGACAACCAAGCTGCCGTTGCTATTGCATCCCATCCAATCCTACCTTCTATTAAACCACCAATTCATCCAAAAGCTTAAGCTGGTGGTTGAACGCAAAATTTAATTATATATCACCAACACTCCCCCTCACTTGTGGGCTTGAAATATCTGAAAGGCCCAACAAGTGGAATCAATTTTACCTCCCTTTTGGGTTTGAAATATTTGAAAGGCCCAACAAGTGGAAATTGATTTTAATTGGGGAGGAAACGACAATGCAGGGGCTTGAACACAGGACCTCCCTGGACCACCTGCTCTGATACCATATTAAACCACCAATTCATCCAAAAGCTTAAGCTGGTGGTTGAAGGCAAATTTAATTATATATCACCAACACCATGATCAGACGAAGCACATAAAAATCGATTGCCACTTTGTAAGAGACAAGATCATTGATGGCTTCTTGAAAGTATTGTCAATTCGATTACCCTTACAACTAGCTGACATGTTTACCGAGTCATTATCGGCTGTTTTGTCAAAACTTTTTGTCAAGTTGGGTGTCCTTGATGTCCATTTCCAACTGAAGAGTATTAAAATGATGCCTTGTAAATAATTGATTCTTGTTATTAATTGTCGTTAATCTTGTAGGATTGGTTTCTTTGTTATCAAGTGATTTTTTTTTTGAAAAGGATACGAGTCTCAATATTATTAGTATAAATAAAGAGACAAAGCTCAATGTACATGAGGGTTATACAAAGAGCAATAGGGGAAGGAGGATTAGCAGGCACATCCGAGCATCTCAAGTAGGTTGACACCCCCTTAGCGCCCTTAACACATCCAAAAAGCGACAATACAAGATCAAACAAAAAACCACAAATACAAAGCCAAAAAAAAATGATAAAAAGAATCTGTCCAAAGCAAAATCATAAATAAAAGGCAGCATGCTGAGAACAAAGAAGAATAAGCCTTGATTGATTGAACAAAAAGCTGTTTGAAGCATGGGGCTGATCAGGAAGTCCTGATGATCAAGGACTTCAAAGTGGGGAGGCTGTGAAGGCTGGCCAATATAACACAATATCCTACGTCAAAGTTCTTTTTCATTACTTTTTCTAAAAATTCTCAATCTACTCTGTCAAAGGCCATTTCAAGGTCTAATTTAGTGATCCATCCTTTCTTTTTTCGGATTCTATAGTCCTCCACAGCTTCGTTTGCTATTAAAATAGGGTCCAAGATTTGACGCCCTTCCAGAAGGCCACATTATGATGGAGCAATAATACTTGGCATTACTTTCTTTAATCTTTCTGCAAGAACCTTTGCAAACAACTTTTAAATTAATGTTGAAACTGATCCAGCAGAGAACGTGAAACTGACCTTCCTTCTCTTGACCATGAATGAGAAGTAACTCCATTAAGAAATAACCCCAATATTCAATGTTTATTACCCTTGCACTTTGAAAACGTTGTTAAGTACTTGCACTTTACCAATAATGAGGTCAAATATTGACATGTTGAAAAAAAACGCATGTATTTGGATGTTGAAGTACTTTTTAATTTTATTGGTTTCATATCTCTATACAAACTAACTTCATATCTCATATACAAACTATGTCCCCTGTTCTTTCTTCAGGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGGTATTTGATTGTTGTAAACTAGTACTAAATTATTTCAAAATATTTGGTGCCTTGAATAAGATTATTATTTTTTTTAAAAAAATAACAATGAGGATAACAATTATTATTATTTTGTAGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGTAATTTTCTTTTCATGAAACTTCATCCAACGTCGTTGTAATTATAAATGTCGATAATTTACAGTTTATAACTCCACTGCACATTTATTTTATGGTTTTTAGGGTATTATATAGTGGTTTACAGTAAACACCAGTCTTGTTACAACTAGAGCTATTCAATTTGCATGTTCATGGAGTTAAGAAAATCAATCTAAATTTCTGTGGTAAGACTACTACGCTGCAATTTATTTCAATGAAAAAGTGAAGTGATTGATATCCTTTCAAGGTAAGGTGTGGATTCAAATCATGATGGTAGTCATCTAAGATACTAAAATATCTTACAACTTTCTTAATACTCAATGTAGTATCGAGTAAGATTTGATAGTTGTGCCTATGATTAATATAGATTTATTTAACTTATTCTGGTGCCCACAGTTGTTAAAAATGCACAAAAACTGGGGGGCCTTTGTTTTGTCTACAATATGATGGTATCATATGGATTGTAAATGAATTCAAATGAGTGATTAGTTGGAGGGAAGTTACTCTTGTTTTATTGGGCTATATGATAGGAGAGATGGCATGTCCCCTCAAGAGTTCTGCTATTTCTATGTTCTACTTGAATTATATTAATTTAGGCTCCATATGTGTAAGTTATTTCGATCGTATAACTAAATCTCCTTTTGTTAAAAATGACCAGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGA ATGTCTCAGAATAATGCAACTACTTCTACTGATGGTGTTGATACAAACTGTTACGAGGAGCAGAACACAGAACTGAATGACAATGAAATACTGAATGATGCTGCAATAGAACATACTGACAATGTTGTTATAATTGAAGTTGCAAATGAAGCCGACCGTAGTAGAAGCTGTGAGCCTACTGCAAATGATAGCAGCCGTGAACCTGCACCTGTCACACTCCATAGATCATCTCGGCAGTTATGTCTACCTTCATATCTTAGGGATTTCCATCACAACATGATTGGGAAGAAACATGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGA ATGTCTCAGAATAATGCAACTACTTCTACTGATGGTGTTGATACAAACTGTTACGAGGAGCAGAACACAGAACTGAATGACAATGAAATACTGAATGATGCTGCAATAGAACATACTGACAATGTTGTTATAATTGAAGTTGCAAATGAAGCCGACCGTAGTAGAAGCTGTGAGCCTACTGCAAATGATAGCAGCCGTGAACCTGCACCTGTCACACTCCATAGATCATCTCGGCAGTTATGTCTACCTTCATATCTTAGGGATTTCCATCACAACATGATTGGGAAGAAACATGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGA MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVIIEVANEADRSRSCEPTANDSSREPAPVTLHRSSRQLCLPSYLRDFHHNMIGKKHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVPSTLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR* Homology
BLAST of CSPI03G21780 vs. ExPASy Swiss-Prot
Match: Q6YW64 (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB4 PE=2 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.1e-08 Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 0
BLAST of CSPI03G21780 vs. ExPASy Swiss-Prot
Match: O04492 (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 3.5e-07 Identity = 30/78 (38.46%), Postives = 41/78 (52.56%), Query Frame = 0
BLAST of CSPI03G21780 vs. ExPASy Swiss-Prot
Match: Q0IV63 (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB7 PE=2 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 2.5e-05 Identity = 26/66 (39.39%), Postives = 36/66 (54.55%), Query Frame = 0
BLAST of CSPI03G21780 vs. ExPASy Swiss-Prot
Match: Q0IQN6 (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB8 PE=2 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 2.5e-05 Identity = 26/66 (39.39%), Postives = 36/66 (54.55%), Query Frame = 0
BLAST of CSPI03G21780 vs. ExPASy Swiss-Prot
Match: Q0DJA3 (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB3 PE=2 SV=1) HSP 1 Score: 50.4 bits (119), Expect = 4.3e-05 Identity = 26/66 (39.39%), Postives = 35/66 (53.03%), Query Frame = 0
BLAST of CSPI03G21780 vs. ExPASy TrEMBL
Match: A0A0A0LCN7 (DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G345370 PE=4 SV=1) HSP 1 Score: 627.9 bits (1618), Expect = 2.4e-176 Identity = 321/325 (98.77%), Postives = 322/325 (99.08%), Query Frame = 0
BLAST of CSPI03G21780 vs. ExPASy TrEMBL
Match: A0A1S3C485 (uncharacterized protein LOC103496837 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496837 PE=4 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 4.2e-104 Identity = 199/229 (86.90%), Postives = 211/229 (92.14%), Query Frame = 0
BLAST of CSPI03G21780 vs. ExPASy TrEMBL
Match: A0A1S3C4R2 (uncharacterized protein LOC103496837 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496837 PE=4 SV=1) HSP 1 Score: 381.3 bits (978), Expect = 4.0e-102 Identity = 198/229 (86.46%), Postives = 210/229 (91.70%), Query Frame = 0
BLAST of CSPI03G21780 vs. ExPASy TrEMBL
Match: A0A6J1F5U3 (double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442377 PE=4 SV=1) HSP 1 Score: 308.5 bits (789), Expect = 3.3e-80 Identity = 168/228 (73.68%), Postives = 187/228 (82.02%), Query Frame = 0
BLAST of CSPI03G21780 vs. ExPASy TrEMBL
Match: A0A6J1J4E3 (double-stranded RNA-binding protein 4-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482525 PE=4 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 7.0e-75 Identity = 158/215 (73.49%), Postives = 174/215 (80.93%), Query Frame = 0
BLAST of CSPI03G21780 vs. NCBI nr
Match: XP_004149792.1 (uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus] >KAE8650625.1 hypothetical protein Csa_011062 [Cucumis sativus]) HSP 1 Score: 441.8 bits (1135), Expect = 5.1e-120 Identity = 225/229 (98.25%), Postives = 227/229 (99.13%), Query Frame = 0
BLAST of CSPI03G21780 vs. NCBI nr
Match: XP_011651405.1 (double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus]) HSP 1 Score: 435.3 bits (1118), Expect = 4.8e-118 Identity = 224/229 (97.82%), Postives = 226/229 (98.69%), Query Frame = 0
BLAST of CSPI03G21780 vs. NCBI nr
Match: XP_008457066.1 (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo]) HSP 1 Score: 387.9 bits (995), Expect = 8.7e-104 Identity = 199/229 (86.90%), Postives = 211/229 (92.14%), Query Frame = 0
BLAST of CSPI03G21780 vs. NCBI nr
Match: XP_008457067.1 (PREDICTED: uncharacterized protein LOC103496837 isoform X2 [Cucumis melo]) HSP 1 Score: 381.3 bits (978), Expect = 8.2e-102 Identity = 198/229 (86.46%), Postives = 210/229 (91.70%), Query Frame = 0
BLAST of CSPI03G21780 vs. NCBI nr
Match: XP_038897078.1 (double-stranded RNA-binding protein 8-like isoform X1 [Benincasa hispida] >XP_038897083.1 double-stranded RNA-binding protein 8-like isoform X1 [Benincasa hispida]) HSP 1 Score: 357.5 bits (916), Expect = 1.3e-94 Identity = 185/230 (80.43%), Postives = 203/230 (88.26%), Query Frame = 0
BLAST of CSPI03G21780 vs. TAIR 10
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 2.5e-08 Identity = 30/78 (38.46%), Postives = 41/78 (52.56%), Query Frame = 0
BLAST of CSPI03G21780 vs. TAIR 10
Match: AT3G26932.1 (dsRNA-binding protein 3 ) HSP 1 Score: 44.7 bits (104), Expect = 1.7e-04 Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 0
BLAST of CSPI03G21780 vs. TAIR 10
Match: AT3G26932.2 (dsRNA-binding protein 3 ) HSP 1 Score: 44.7 bits (104), Expect = 1.7e-04 Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 0
BLAST of CSPI03G21780 vs. TAIR 10
Match: AT5G41070.1 (dsRNA-binding protein 5 ) HSP 1 Score: 43.9 bits (102), Expect = 2.9e-04 Identity = 29/89 (32.58%), Postives = 49/89 (55.06%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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