Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTGGGCCTTCTACATTGCTCCTCAATTATGCAAAGAAAGATCCCCAGCAGTTGTCTTTTGCCCTCGGTGTGCCCGTTTTGTATGAAGGACAGTGAGGACCTGCTGCATCTCTTTTTTATCTGTCCTTATTCAGCCAATTGCTGGGGGAATATGCTCTTCCTTTTCAATGTGGCATGGGCTTTTGATGGATCATTAAGCTCGAAAGTCTTTCAACTGCTTAGGCGCCCGTTACTGTCAAAGAGACCGCAAATAAATTGGGAAAATATGTCGAAAGCAATGCTTGTGGAACTCTGGTTTGAACGTAATCAACGAATCTTTCATAACAAGGCAAGGGGCTGGTTTGAAACTTCGGACACGGCAAAAAGAAATGCAGCATCTTGGTGTTCTTTGAACAAGGAATATAATGAGTATTCCATTCAAGATTTATGCTTAAACTGGGCCGCTTTCATCTCTCAACCCATTTAA
mRNA sequence
ATGGCTTTGGGCCTTCTACATTGCTCCTCAATTATGCAAAGAAAGATCCCCAGCAGTTGTCTTTTGCCCTCGGTGTGCCCGTTTTGTATGAAGGACAGTGAGGACCTGCTGCATCTCTTTTTTATCTGTCCTTATTCAGCCAATTGCTGGGGGAATATGCTCTTCCTTTTCAATGTGGCATGGGCTTTTGATGGATCATTAAGCTCGAAAGTCTTTCAACTGCTTAGGCGCCCGTTACTGTCAAAGAGACCGCAAATAAATTGGGAAAATATGTCGAAAGCAATGCTTGTGGAACTCTGGTTTGAACGTAATCAACGAATCTTTCATAACAAGGCAAGGGGCTGGTTTGAAACTTCGGACACGGCAAAAAGAAATGCAGCATCTTGGTGTTCTTTGAACAAGGAATATAATGAGTATTCCATTCAAGATTTATGCTTAAACTGGGCCGCTTTCATCTCTCAACCCATTTAA
Coding sequence (CDS)
ATGGCTTTGGGCCTTCTACATTGCTCCTCAATTATGCAAAGAAAGATCCCCAGCAGTTGTCTTTTGCCCTCGGTGTGCCCGTTTTGTATGAAGGACAGTGAGGACCTGCTGCATCTCTTTTTTATCTGTCCTTATTCAGCCAATTGCTGGGGGAATATGCTCTTCCTTTTCAATGTGGCATGGGCTTTTGATGGATCATTAAGCTCGAAAGTCTTTCAACTGCTTAGGCGCCCGTTACTGTCAAAGAGACCGCAAATAAATTGGGAAAATATGTCGAAAGCAATGCTTGTGGAACTCTGGTTTGAACGTAATCAACGAATCTTTCATAACAAGGCAAGGGGCTGGTTTGAAACTTCGGACACGGCAAAAAGAAATGCAGCATCTTGGTGTTCTTTGAACAAGGAATATAATGAGTATTCCATTCAAGATTTATGCTTAAACTGGGCCGCTTTCATCTCTCAACCCATTTAA
Protein sequence
MALGLLHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDGSLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRNAASWCSLNKEYNEYSIQDLCLNWAAFISQPI*
Homology
BLAST of CSPI03G21370 vs. ExPASy TrEMBL
Match:
A0A5A7V5N8 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00520 PE=3 SV=1)
HSP 1 Score: 176.4 bits (446), Expect = 9.3e-41
Identity = 82/146 (56.16%), Postives = 104/146 (71.23%), Query Frame = 0
Query: 9 SSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDGSLS 68
S +MQR++ +SCL+PS C C+++ EDL L F CPYS CW N+L LF V WAFDGS +
Sbjct: 556 SLVMQRELLNSCLMPSACSLCLEEGEDLQPL-FTCPYSVKCWENLLSLFGVDWAFDGSFN 615
Query: 69 SKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRNAAS 128
S + Q+L L + P++ W NMSKA+L ++WFE NQRIF K W E D AKRNAA+
Sbjct: 616 SNIKQILLGSSLKEGPRLIWGNMSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAAT 675
Query: 129 WCSLNKEYNEYSIQDLCLNWAAFISQ 155
WC LNKE+ +YSIQDL +NW AFISQ
Sbjct: 676 WCMLNKEFIDYSIQDLSVNWLAFISQ 700
BLAST of CSPI03G21370 vs. ExPASy TrEMBL
Match:
A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 8.2e-37
Identity = 78/154 (50.65%), Postives = 104/154 (67.53%), Query Frame = 0
Query: 1 MALGLLHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVA 60
M ++ S I+Q+K P + + PS+CP C+K S++L H+F CP S+ W + LFN+
Sbjct: 233 MVFRFVNSSEILQKKSPIN-VSPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLV 292
Query: 61 WAFDGSLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSD 120
W FD SLS+ V QLL L K P+I WE +SKA+L+E+W ERNQRIFH+KAR E
Sbjct: 293 WNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMH 352
Query: 121 TAKRNAASWCSLNKEYNEYSIQDLCLNWAAFISQ 155
A NAA+WCSL KE+ YSIQD+CLNW F++Q
Sbjct: 353 AADLNAAAWCSLRKEFVNYSIQDICLNWNVFLNQ 385
BLAST of CSPI03G21370 vs. ExPASy TrEMBL
Match:
A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)
HSP 1 Score: 158.3 bits (399), Expect = 2.6e-35
Identity = 76/142 (53.52%), Postives = 98/142 (69.01%), Query Frame = 0
Query: 9 SSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDGSLS 68
S I+Q+K P + + PS+CP C+K S++L H+F CP S+ W + LFN+ W FD SLS
Sbjct: 241 SEILQKKSPIN-VSPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLS 300
Query: 69 SKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRNAAS 128
+ V QLL L K P+I WE +SKA+L+E+W ERNQRIFH+KAR E A NAA+
Sbjct: 301 ASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAA 360
Query: 129 WCSLNKEYNEYSIQDLCLNWAA 151
WCSL KE+ YSIQD+CLNW A
Sbjct: 361 WCSLRKEFVNYSIQDICLNWNA 381
BLAST of CSPI03G21370 vs. ExPASy TrEMBL
Match:
A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)
HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 66/151 (43.71%), Postives = 87/151 (57.62%), Query Frame = 0
Query: 4 GLLHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAF 63
G L+ + I+Q+K PS LLPS C C K ED HLFF C +++ CW + FNV W F
Sbjct: 51 GKLNTADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHCYFASKCWNLLFHQFNVDWCF 110
Query: 64 DGSLSSKVFQLLR-RPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTA 123
D V+QLL P LS + W N+ KA+L ELWFERN R+F K R + E+ +A
Sbjct: 111 DLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKALLSELWFERNSRLFEEKRRLFDESFYSA 170
Query: 124 KRNAASWCSLNKEYNEYSIQDLCLNWAAFIS 154
K A+ WCSL + +S + NW AFI+
Sbjct: 171 KFKASLWCSLVDSFLHHSPSMIYANWGAFIN 201
BLAST of CSPI03G21370 vs. ExPASy TrEMBL
Match:
A0A5D3DC06 (Mediator of RNA polymerase II transcription subunit 8 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00890 PE=4 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 3.1e-20
Identity = 58/142 (40.85%), Postives = 75/142 (52.82%), Query Frame = 0
Query: 8 CSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDGSL 67
C+ I+Q+K P+ CLLPSVCP C K
Sbjct: 144 CADILQKKAPNKCLLPSVCPLCQK------------------------------------ 203
Query: 68 SSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRNA- 127
L P L K+P++ W N+SKA+L ELWFERNQ IFH K + E +AK+NA
Sbjct: 204 ------LPEGPPLPKKPRLIWLNLSKALLSELWFERNQHIFHGKEKPRLEILLSAKQNAV 243
Query: 128 ASWCSLNKEYNEYSIQDLCLNW 149
+WCSLNKE+ +YSIQ++CLNW
Sbjct: 264 VAWCSLNKEFGDYSIQNICLNW 243
BLAST of CSPI03G21370 vs. NCBI nr
Match:
KAA0062564.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 176.4 bits (446), Expect = 1.9e-40
Identity = 82/146 (56.16%), Postives = 104/146 (71.23%), Query Frame = 0
Query: 9 SSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDGSLS 68
S +MQR++ +SCL+PS C C+++ EDL L F CPYS CW N+L LF V WAFDGS +
Sbjct: 556 SLVMQRELLNSCLMPSACSLCLEEGEDLQPL-FTCPYSVKCWENLLSLFGVDWAFDGSFN 615
Query: 69 SKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRNAAS 128
S + Q+L L + P++ W NMSKA+L ++WFE NQRIF K W E D AKRNAA+
Sbjct: 616 SNIKQILLGSSLKEGPRLIWGNMSKALLSDIWFECNQRIFRGKVMHWSERLDIAKRNAAT 675
Query: 129 WCSLNKEYNEYSIQDLCLNWAAFISQ 155
WC LNKE+ +YSIQDL +NW AFISQ
Sbjct: 676 WCMLNKEFIDYSIQDLSVNWLAFISQ 700
BLAST of CSPI03G21370 vs. NCBI nr
Match:
TYK21876.1 (hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa])
HSP 1 Score: 163.3 bits (412), Expect = 1.7e-36
Identity = 78/154 (50.65%), Postives = 104/154 (67.53%), Query Frame = 0
Query: 1 MALGLLHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVA 60
M ++ S I+Q+K P + + PS+CP C+K S++L H+F CP S+ W + LFN+
Sbjct: 233 MVFRFVNSSEILQKKSPIN-VSPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLV 292
Query: 61 WAFDGSLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSD 120
W FD SLS+ V QLL L K P+I WE +SKA+L+E+W ERNQRIFH+KAR E
Sbjct: 293 WNFDSSLSASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMH 352
Query: 121 TAKRNAASWCSLNKEYNEYSIQDLCLNWAAFISQ 155
A NAA+WCSL KE+ YSIQD+CLNW F++Q
Sbjct: 353 AADLNAAAWCSLRKEFVNYSIQDICLNWNVFLNQ 385
BLAST of CSPI03G21370 vs. NCBI nr
Match:
KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])
HSP 1 Score: 158.3 bits (399), Expect = 5.4e-35
Identity = 76/142 (53.52%), Postives = 98/142 (69.01%), Query Frame = 0
Query: 9 SSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDGSLS 68
S I+Q+K P + + PS+CP C+K S++L H+F CP S+ W + LFN+ W FD SLS
Sbjct: 241 SEILQKKSPIN-VSPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLS 300
Query: 69 SKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRNAAS 128
+ V QLL L K P+I WE +SKA+L+E+W ERNQRIFH+KAR E A NAA+
Sbjct: 301 ASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKARQRAEIMHAADLNAAA 360
Query: 129 WCSLNKEYNEYSIQDLCLNWAA 151
WCSL KE+ YSIQD+CLNW A
Sbjct: 361 WCSLRKEFVNYSIQDICLNWNA 381
BLAST of CSPI03G21370 vs. NCBI nr
Match:
XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])
HSP 1 Score: 157.5 bits (397), Expect = 9.2e-35
Identity = 74/155 (47.74%), Postives = 97/155 (62.58%), Query Frame = 0
Query: 1 MALGLLHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVA 60
M G L+ + ++Q+K P+ L P+VCPFC+ SE LHLFF CPYS+ CW +L FN+
Sbjct: 163 MLFGQLNVAEVLQKKQPTPSLSPTVCPFCLHHSEVSLHLFFTCPYSSWCWNKLLCFFNLP 222
Query: 61 WAFDGSLSSKVFQLLRRPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSD 120
S VFQLL RP K ++ W N KA+L +LWFERNQRIF+NKA + +
Sbjct: 223 LTLCNDFKSNVFQLLARPTSHKSTRLLWCNAVKALLADLWFERNQRIFYNKATSCQDRLE 282
Query: 121 TAKRNAASWCSLNKEYNEYSIQDLCLNWAAFISQP 156
A+R A+SWC L+ + YS+ D LNW AFIS P
Sbjct: 283 AARRQASSWCLLSDPFRAYSLSDFNLNWEAFISTP 317
BLAST of CSPI03G21370 vs. NCBI nr
Match:
XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])
HSP 1 Score: 126.3 bits (316), Expect = 2.3e-25
Identity = 66/151 (43.71%), Postives = 87/151 (57.62%), Query Frame = 0
Query: 4 GLLHCSSIMQRKIPSSCLLPSVCPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAF 63
G L+ + I+Q+K PS LLPS C C K ED HLFF C +++ CW + FNV W F
Sbjct: 51 GKLNTADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHCYFASKCWNLLFHQFNVDWCF 110
Query: 64 DGSLSSKVFQLLR-RPLLSKRPQINWENMSKAMLVELWFERNQRIFHNKARGWFETSDTA 123
D V+QLL P LS + W N+ KA+L ELWFERN R+F K R + E+ +A
Sbjct: 111 DLKAGDNVYQLLHGPPHLSSSVRFLWLNVVKALLSELWFERNSRLFEEKRRLFDESFYSA 170
Query: 124 KRNAASWCSLNKEYNEYSIQDLCLNWAAFIS 154
K A+ WCSL + +S + NW AFI+
Sbjct: 171 KFKASLWCSLVDSFLHHSPSMIYANWGAFIN 201
BLAST of CSPI03G21370 vs. TAIR 10
Match:
AT3G25270.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 47.4 bits (111), Expect = 1.3e-05
Identity = 30/108 (27.78%), Postives = 48/108 (44.44%), Query Frame = 0
Query: 26 CPFCMKDSEDLLHLFFICPYSANCWGNMLFLFNVAWAFDGSLSSKVFQLLRRPLLSKRPQ 85
C C ++ E HLFF C Y+ W ++ +K+ LL L +++PQ
Sbjct: 56 CHRCCQEDETSQHLFFDCFYAQQVWRASGIPHQELRTTGITMETKMELLLSSCLANRQPQ 115
Query: 86 INWENMSKAMLVELWFERNQRIFHNKARGWFETSDTAKRNAASWCSLN 134
+ N++ +L LW RNQ +F K+ W T A+ + W N
Sbjct: 116 L--FNLAIWILWRLWKSRNQLVFQQKSISWQNTLQRARNDVQEWEDTN 161
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V5N8 | 9.3e-41 | 56.16 | GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... | [more] |
| A0A5D3DE60 | 8.2e-37 | 50.65 | zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
| A0A5A7T2Y0 | 2.6e-35 | 53.52 | zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... | [more] |
| A0A6J1DIE2 | 1.1e-25 | 43.71 | uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
| A0A5D3DC06 | 3.1e-20 | 40.85 | Mediator of RNA polymerase II transcription subunit 8 isoform X2 OS=Cucumis melo... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0062564.1 | 1.9e-40 | 56.16 | GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa] | [more] |
| TYK21876.1 | 1.7e-36 | 50.65 | hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa] | [more] |
| KAA0035739.1 | 5.4e-35 | 53.52 | hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa] | [more] |
| XP_038903695.1 | 9.2e-35 | 47.74 | uncharacterized protein LOC120090219 [Benincasa hispida] | [more] |
| XP_022153214.1 | 2.3e-25 | 43.71 | uncharacterized protein LOC111020765 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G25270.1 | 1.3e-05 | 27.78 | Ribonuclease H-like superfamily protein | [more] |
