CSPI03G20690 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G20690
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CCHC-type domain-containing protein
Location	Chr3: 16658298 .. 16659652 (-)
RNA-Seq Expression	CSPI03G20690
Synteny	CSPI03G20690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATTCTGACTCTTCTGATGAAGACAACTTTCTGAACATTCATCAAGAACCTAAACAAAGGCTTGGACTTCGACCATACTTTCAAGAAGATCAAGAAATACGTATGAAAGTGGATCTCCCTACCTTCAATGGTCGAATGGACGTGGAGAAGTTTCTTGATTGGATCAAGAACGTAGAAATTTTTTTCGACTATGCCAATACACCCGAACACAAGAAGGTCCGATTAGTTGCTCTCAAACTTCAAGGTGGCGCAAGCGCTTGGTGGGATCAGTTCAAAACAATAGACGATTATTCGGTAAACAATCAATAAGAAGTTGGCCAAAGATGTTACGTCTAATGAAGAAAAGATTCTTACCAATCAACTATCAGCAACTACTTTACAATCAGTATCAACAATGTCATCAAGGCTCACGAAGCATCATGGATTATACAGAAGACTTCTATCCACTTGGTGCTCGAAATAATCTTTTCGAAACAGAACACCAACAAATTTCCAGGTTTATTCATGGTCTACGAGATGAGATTAAAGATATTGTACACTTACATCCTTTAACTTTTCTTTCAGATGCCATCTCCTTAGCTTCCAAGATTGAGGATAGTGAAGAGATCAAGAAAACCAAGAATTCTCAAAGAAAGAACAATTGGGACAAACAACAAAGAACTAACCTAACTAATTCATTTAGAAACTTTCAACAAGGAAGTTCATCCACAACTTCACAGCTCGCCAAGAAAGATGAAAATTCATCAAAGATTCCAGCCACTAAACCAGGTGAGAATAACGCAAAGAAGAAGGTTGACAACATTTATAACCGTCCTACTTTGGGTAAATGTTTCAAGTGTGGACAACAAGGACACTTCTCCAACGAGTGCCCTCAAAGGTGAACTTTGACAATTGAAGAAGGACAAGAAGATAATGACTCAGATGACATCTTTGAGATTTCAACACCGGATGAAGGAGATCAATTATCTTGTGTCATTCAGAGAATTCTTTTCACCCCTACGGCTGGACAAATACCTCAAAGGAATTCCCTCTTTCGAACAAGATGCACCATTAACGGTAAAGTGTGTCAAGTTATCATTGATAGTGGTAGTAGTGAAAATTTAGTATCTAAAAAACTAGTTTCTGCCCTAAATTTGAAAACTGACCCACACCCGAATCCCTATAAGGTTAGTTGGATCTAAAAAGGGGGCGAAGTTACTATTAGTGAGGTTTGTACTATTTCTTTGTCAATAGGACAGCACTATAAAGACCAAATAATATGTGACGTTCTTGATATGGATGCTTGCCACATCCTTTTAGGAAGACCTTGGCAATATGACACAGATTACATTCATAGAGGAAGATCTTTATTGA

mRNA sequence

ACGATTCTGACTCTTCTGATGAAGACAACTTTCTGAACATTCATCAAGAACCTAAACAAAGGCTTGGACTTCGACCATACTTTCAAGAAGATCAAGAAATACGTATGAAAGTGGATCTCCCTACCTTCAATGGTCGAATGGACGTGGAGAAGTTTCTTGATTGGATCAAGAACGTAGAAATTTTTTTCGACTATGCCAATACACCCGAACACAAGAAGGTCCGATTAGTTGCTCTCAAACTTCAAGGTGGCGCAAGCGCTTGGTGGGATCAGTTCAAAACAATAGACGATTATTCGTATCAACAATGTCATCAAGGCTCACGAAGCATCATGGATTATACAGAAGACTTCTATCCACTTGGTGCTCGAAATAATCTTTTCGAAACAGAACACCAACAAATTTCCAGGTTTATTCATGGTCTACGAGATGAGATTAAAGATATTGTACACTTACATCCTTTAACTTTTCTTTCAGATGCCATCTCCTTAGCTTCCAAGATTGAGGATAGTGAAGAGATCAAGAAAACCAAGAATTCTCAAAGAAAGAACAATTGGGACAAACAACAAAGAACTAACCTAACTAATTCATTTAGAAACTTTCAACAAGGAAGTTCATCCACAACTTCACAGCTCGCCAAGAAAGATGAAAATTCATCAAAGATTCCAGCCACTAAACCAGGTGAGAATAACGCAAAGAAGAAGGTTGACAACATTTATAACCGTCCTACTTTGGGTAAATGTTTCAAGTGTGGACAACAAGGACACTTCTCCAACGAGTGCCCTCAAAGAGAATTCTTTTCACCCCTACGGCTGGACAAATACCTCAAAGGAATTCCCTCTTTCGAACAAGATGCACCATTAACGGAAGACCTTGGCAATATGACACAGATTACATTCATAGAGGAAGATCTTTATTGA

Coding sequence (CDS)

GATTCTGACTCTTCTGATGAAGACAACTTTCTGAACATTCATCAAGAACCTAAACAAAGGCTTGGACTTCGACCATACTTTCAAGAAGATCAAGAAATACGTATGAAAGTGGATCTCCCTACCTTCAATGGTCGAATGGACGTGGAGAAGTTTCTTGATTGGATCAAGAACGTAGAAATTTTTTTCGACTATGCCAATACACCCGAACACAAGAAGGTCCGATTAGTTGCTCTCAAACTTCAAGGTGGCGCAAGCGCTTGGTGGGATCAGTTCAAAACAATAGACGATTATTCGTATCAACAATGTCATCAAGGCTCACGAAGCATCATGGATTATACAGAAGACTTCTATCCACTTGGTGCTCGAAATAATCTTTTCGAAACAGAACACCAACAAATTTCCAGGTTTATTCATGGTCTACGAGATGAGATTAAAGATATTGTACACTTACATCCTTTAACTTTTCTTTCAGATGCCATCTCCTTAGCTTCCAAGATTGAGGATAGTGAAGAGATCAAGAAAACCAAGAATTCTCAAAGAAAGAACAATTGGGACAAACAACAAAGAACTAACCTAACTAATTCATTTAGAAACTTTCAACAAGGAAGTTCATCCACAACTTCACAGCTCGCCAAGAAAGATGAAAATTCATCAAAGATTCCAGCCACTAAACCAGGTGAGAATAACGCAAAGAAGAAGGTTGACAACATTTATAACCGTCCTACTTTGGGTAAATGTTTCAAGTGTGGACAACAAGGACACTTCTCCAACGAGTGCCCTCAAAGAGAATTCTTTTCACCCCTACGGCTGGACAAATACCTCAAAGGAATTCCCTCTTTCGAACAAGATGCACCATTAACGGAAGACCTTGGCAATATGACACAGATTACATTCATAGAGGAAGATCTTTATTGA

Protein sequence

DSDSSDEDNFLNIHQEPKQRLGLRPYFQEDQEIRMKVDLPTFNGRMDVEKFLDWIKNVEIFFDYANTPEHKKVRLVALKLQGGASAWWDQFKTIDDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRDEIKDIVHLHPLTFLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQQRTNLTNSFRNFQQGSSSTTSQLAKKDENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECPQREFFSPLRLDKYLKGIPSFEQDAPLTEDLGNMTQITFIEEDLY*

Homology

[Close]

BLAST of CSPI03G20690 vs. ExPASy TrEMBL
Match: A0A5D3DJC1 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00480 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.7e-105
Identity = 206/291 (70.79%), Postives = 224/291 (76.98%), Query Frame = 0


Query: 1   DSDSSDEDNFLNIHQEPKQRLGLRPYFQEDQEIRMKVDLPTFNGRMDVEKFLDWIKNVEI 60
           +SDSSDEDN LNIHQEP++ L   PY QEDQEIRMKVDLPTFNGRMDVEKFLDWIKNVE 
Sbjct: 79  NSDSSDEDNLLNIHQEPQRGLSFLPYNQEDQEIRMKVDLPTFNGRMDVEKFLDWIKNVEN 138

Query: 61  FFDYANTPEHKKVRLVALKLQGGASAWWDQ------------------------------ 120
           FFDYAN  EHKKV+LVALKLQGGASAWWDQ                              
Sbjct: 139 FFDYANASEHKKVQLVALKLQGGASAWWDQLQNNRRLFGKQPLRSWPKMLRLMKKRFLPI 198

Query: 121 -FKTIDDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRDEIKDIVH 180
            ++ +    YQQCHQG RSIMDYTE+FY LGAR+NL ETEHQQISR IHGL++EIKD+V+
Sbjct: 199 NYQQLLYNQYQQCHQGLRSIMDYTEEFYRLGARSNLPETEHQQISRIIHGLQEEIKDVVN 258

Query: 181 LHPLTFLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQQRTNLTNSFRNFQQGSSSTTSQ 240
           LH LTFL DAIS+ASKIED+EEIKKTK +QRKNNWDK QR N TNSFRNF QGSSS+TSQ
Sbjct: 259 LHLLTFLLDAISIASKIEDNEEIKKTKIAQRKNNWDK-QRANPTNSFRNFHQGSSSSTSQ 318

Query: 241 LAKKDENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECP 261
             KKDEN  K P TK GE N KKKVDN+Y RPTLGKCFKCGQQGH SNECP
Sbjct: 319 PTKKDENLPKFPTTKLGEINTKKKVDNVYTRPTLGKCFKCGQQGHLSNECP 368

[Close]

BLAST of CSPI03G20690 vs. ExPASy TrEMBL
Match: A0A5A7T7L8 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00430 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 5.1e-59
Identity = 137/228 (60.09%), Postives = 144/228 (63.16%), Query Frame = 0


Query: 35  MKVDLPTFNGRMDVEKFLDWIKNVEIFFDYANTPEHKKVRLVALKLQGGASAWWDQFKTI 94
           MKVDLPTFNG+MD EKFLDWIKNVE FF YANTPEHKKVRLVALKLQGGASAW DQ    
Sbjct: 1   MKVDLPTFNGQMDEEKFLDWIKNVEFFFYYANTPEHKKVRLVALKLQGGASAWRDQL--- 60

Query: 95  DDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRDEIKDIVHLHPLT 154
                    Q +R                                               
Sbjct: 61  ---------QNNRR---------------------------------------------- 120

Query: 155 FLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQQRTNLTNSFRNFQQGSSSTTSQLAKKD 214
            L DA SLASKIE SEEIKKTK  QRKN+WDKQQRTN TNSFRNFQQGSSST SQ  KKD
Sbjct: 121 -LFDAFSLASKIEGSEEIKKTKTFQRKNSWDKQQRTNPTNSFRNFQQGSSSTPSQPVKKD 169

Query: 215 ENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECPQR 263
           +   K PATKP EN +KKKVDN+YNRPTLGKCF+C QQGH SNEC QR
Sbjct: 181 DIPPKNPATKPSENISKKKVDNVYNRPTLGKCFRCSQQGHLSNECHQR 169

[Close]

BLAST of CSPI03G20690 vs. ExPASy TrEMBL
Match: A0A5D3E462 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00070 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 137/228 (60.09%), Postives = 144/228 (63.16%), Query Frame = 0


Query: 35  MKVDLPTFNGRMDVEKFLDWIKNVEIFFDYANTPEHKKVRLVALKLQGGASAWWDQFKTI 94
           MKVDLPTFNG+MD EKFLDWIKNVE FF YANTPEHKKVRLVALKLQGGASAW DQ    
Sbjct: 1   MKVDLPTFNGQMDEEKFLDWIKNVEFFFYYANTPEHKKVRLVALKLQGGASAWRDQL--- 60

Query: 95  DDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRDEIKDIVHLHPLT 154
                    Q +R                                               
Sbjct: 61  ---------QNNRR---------------------------------------------- 120

Query: 155 FLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQQRTNLTNSFRNFQQGSSSTTSQLAKKD 214
            L DA SLASKIE SEEIKKTK  QRKN+WDKQQRTN TNSFRNFQQGSSST SQ  KKD
Sbjct: 121 -LFDAFSLASKIEGSEEIKKTKTFQRKNSWDKQQRTNPTNSFRNFQQGSSSTPSQPVKKD 169

Query: 215 ENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECPQR 263
           +   K PATKP EN +KKKVDN+YNRPTLGKCF+C QQGH SNEC QR
Sbjct: 181 DIPPKNPATKPSENISKKKVDNVYNRPTLGKCFRCSQQGHRSNECHQR 169

[Close]

BLAST of CSPI03G20690 vs. ExPASy TrEMBL
Match: A0A6J1CCQ8 (uncharacterized protein LOC111009540 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009540 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.6e-51
Identity = 137/342 (40.06%), Postives = 191/342 (55.85%), Query Frame = 0


Query: 1   DSDSSD-EDNFLNIH------QEPKQRLGLRPYFQEDQEIRMKVDLPTFNGRMDVEKFLD 60
           DSD+SD ++ FL  H      +   +R G+R  F      +MK+DLPTFNG+MDVE FLD
Sbjct: 112 DSDTSDGDEGFLQQHPRFAREEHYVERGGVRTDF------KMKIDLPTFNGKMDVETFLD 171

Query: 61  WIKNVEIFFDYANTPEHKKVRLVALKLQGGASAWWDQ----------------------- 120
            +KNVE FFDY NTPE KKV+LVA K+Q GASAWWDQ                       
Sbjct: 172 RVKNVENFFDYTNTPEDKKVKLVAFKIQSGASAWWDQLEINCRRLGKQPIRSWPRMLRLM 231

Query: 121 --------FKTIDDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRD 180
                   F+ +    YQ+C QG ++I DYTE F+ LGA+ N+ ETE  +I+RF+ GLR+
Sbjct: 232 RERFLPPNFEQLLYQPYQRCRQGFKTIADYTEAFHRLGAKTNIAETEDYKIARFVDGLRE 291

Query: 181 EIKDIVHLHPLTFLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQ--QRTNLTNSFRNFQ 240
           +I+D + + P+  L+DAI +A+KIED    K+ +   R+  WDK    +T  T++ +  Q
Sbjct: 292 DIQDQMDIQPIHLLTDAIVMATKIEDK---KRLRTPARRTPWDKPSISKTATTDTGKPLQ 351

Query: 241 QGSSSTTSQLAKKDENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECP 300
            G++S  S     D+ +   P   P  + + K+  N Y RPTLGKCF+CGQ  H SNECP
Sbjct: 352 IGTTS-ASTTKPPDDPAKSSPFKTP--DTSSKRGTNPYIRPTLGKCFRCGQVDHLSNECP 411

Query: 301 QREFFSPLRLDKYLKGIPSFEQDAPLTEDLGNMTQITFIEED 303
           QR   + +  D  L+     + D P  +D       T++E D
Sbjct: 412 QRRALALVDQDDLLE----TDIDLPTEDD------PTYVEPD 431

[Close]

BLAST of CSPI03G20690 vs. ExPASy TrEMBL
Match: A0A6J1CAS9 (uncharacterized protein LOC111009540 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009540 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.6e-51
Identity = 137/342 (40.06%), Postives = 191/342 (55.85%), Query Frame = 0


Query: 1   DSDSSD-EDNFLNIH------QEPKQRLGLRPYFQEDQEIRMKVDLPTFNGRMDVEKFLD 60
           DSD+SD ++ FL  H      +   +R G+R  F      +MK+DLPTFNG+MDVE FLD
Sbjct: 112 DSDTSDGDEGFLQQHPRFAREEHYVERGGVRTDF------KMKIDLPTFNGKMDVETFLD 171

Query: 61  WIKNVEIFFDYANTPEHKKVRLVALKLQGGASAWWDQ----------------------- 120
            +KNVE FFDY NTPE KKV+LVA K+Q GASAWWDQ                       
Sbjct: 172 RVKNVENFFDYTNTPEDKKVKLVAFKIQSGASAWWDQLEINCRRLGKQPIRSWPRMLRLM 231

Query: 121 --------FKTIDDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRD 180
                   F+ +    YQ+C QG ++I DYTE F+ LGA+ N+ ETE  +I+RF+ GLR+
Sbjct: 232 RERFLPPNFEQLLYQPYQRCRQGFKTIADYTEAFHRLGAKTNIAETEDYKIARFVDGLRE 291

Query: 181 EIKDIVHLHPLTFLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQ--QRTNLTNSFRNFQ 240
           +I+D + + P+  L+DAI +A+KIED    K+ +   R+  WDK    +T  T++ +  Q
Sbjct: 292 DIQDQMDIQPIHLLTDAIVMATKIEDK---KRLRTPARRTPWDKPSISKTATTDTGKPLQ 351

Query: 241 QGSSSTTSQLAKKDENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECP 300
            G++S  S     D+ +   P   P  + + K+  N Y RPTLGKCF+CGQ  H SNECP
Sbjct: 352 IGTTS-ASTTKPPDDPAKSSPFKTP--DTSSKRGTNPYIRPTLGKCFRCGQVDHLSNECP 411

Query: 301 QREFFSPLRLDKYLKGIPSFEQDAPLTEDLGNMTQITFIEED 303
           QR   + +  D  L+     + D P  +D       T++E D
Sbjct: 412 QRRALALVDQDDLLE----TDIDLPTEDD------PTYVEPD 431

[Close]

BLAST of CSPI03G20690 vs. NCBI nr
Match: KAA0058889.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK23734.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 391.7 bits (1005), Expect = 5.7e-105
Identity = 206/291 (70.79%), Postives = 224/291 (76.98%), Query Frame = 0


Query: 1   DSDSSDEDNFLNIHQEPKQRLGLRPYFQEDQEIRMKVDLPTFNGRMDVEKFLDWIKNVEI 60
           +SDSSDEDN LNIHQEP++ L   PY QEDQEIRMKVDLPTFNGRMDVEKFLDWIKNVE 
Sbjct: 79  NSDSSDEDNLLNIHQEPQRGLSFLPYNQEDQEIRMKVDLPTFNGRMDVEKFLDWIKNVEN 138

Query: 61  FFDYANTPEHKKVRLVALKLQGGASAWWDQ------------------------------ 120
           FFDYAN  EHKKV+LVALKLQGGASAWWDQ                              
Sbjct: 139 FFDYANASEHKKVQLVALKLQGGASAWWDQLQNNRRLFGKQPLRSWPKMLRLMKKRFLPI 198

Query: 121 -FKTIDDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRDEIKDIVH 180
            ++ +    YQQCHQG RSIMDYTE+FY LGAR+NL ETEHQQISR IHGL++EIKD+V+
Sbjct: 199 NYQQLLYNQYQQCHQGLRSIMDYTEEFYRLGARSNLPETEHQQISRIIHGLQEEIKDVVN 258

Query: 181 LHPLTFLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQQRTNLTNSFRNFQQGSSSTTSQ 240
           LH LTFL DAIS+ASKIED+EEIKKTK +QRKNNWDK QR N TNSFRNF QGSSS+TSQ
Sbjct: 259 LHLLTFLLDAISIASKIEDNEEIKKTKIAQRKNNWDK-QRANPTNSFRNFHQGSSSSTSQ 318

Query: 241 LAKKDENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECP 261
             KKDEN  K P TK GE N KKKVDN+Y RPTLGKCFKCGQQGH SNECP
Sbjct: 319 PTKKDENLPKFPTTKLGEINTKKKVDNVYTRPTLGKCFKCGQQGHLSNECP 368

[Close]

BLAST of CSPI03G20690 vs. NCBI nr
Match: KAA0038206.1 (uncharacterized protein E6C27_scaffold270G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 1.0e-58
Identity = 137/228 (60.09%), Postives = 144/228 (63.16%), Query Frame = 0


Query: 35  MKVDLPTFNGRMDVEKFLDWIKNVEIFFDYANTPEHKKVRLVALKLQGGASAWWDQFKTI 94
           MKVDLPTFNG+MD EKFLDWIKNVE FF YANTPEHKKVRLVALKLQGGASAW DQ    
Sbjct: 1   MKVDLPTFNGQMDEEKFLDWIKNVEFFFYYANTPEHKKVRLVALKLQGGASAWRDQL--- 60

Query: 95  DDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRDEIKDIVHLHPLT 154
                    Q +R                                               
Sbjct: 61  ---------QNNRR---------------------------------------------- 120

Query: 155 FLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQQRTNLTNSFRNFQQGSSSTTSQLAKKD 214
            L DA SLASKIE SEEIKKTK  QRKN+WDKQQRTN TNSFRNFQQGSSST SQ  KKD
Sbjct: 121 -LFDAFSLASKIEGSEEIKKTKTFQRKNSWDKQQRTNPTNSFRNFQQGSSSTPSQPVKKD 169

Query: 215 ENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECPQR 263
           +   K PATKP EN +KKKVDN+YNRPTLGKCF+C QQGH SNEC QR
Sbjct: 181 DIPPKNPATKPSENISKKKVDNVYNRPTLGKCFRCSQQGHLSNECHQR 169

[Close]

BLAST of CSPI03G20690 vs. NCBI nr
Match: TYK30599.1 (uncharacterized protein E5676_scaffold84664G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 2.3e-58
Identity = 137/228 (60.09%), Postives = 144/228 (63.16%), Query Frame = 0


Query: 35  MKVDLPTFNGRMDVEKFLDWIKNVEIFFDYANTPEHKKVRLVALKLQGGASAWWDQFKTI 94
           MKVDLPTFNG+MD EKFLDWIKNVE FF YANTPEHKKVRLVALKLQGGASAW DQ    
Sbjct: 1   MKVDLPTFNGQMDEEKFLDWIKNVEFFFYYANTPEHKKVRLVALKLQGGASAWRDQL--- 60

Query: 95  DDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRDEIKDIVHLHPLT 154
                    Q +R                                               
Sbjct: 61  ---------QNNRR---------------------------------------------- 120

Query: 155 FLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQQRTNLTNSFRNFQQGSSSTTSQLAKKD 214
            L DA SLASKIE SEEIKKTK  QRKN+WDKQQRTN TNSFRNFQQGSSST SQ  KKD
Sbjct: 121 -LFDAFSLASKIEGSEEIKKTKTFQRKNSWDKQQRTNPTNSFRNFQQGSSSTPSQPVKKD 169

Query: 215 ENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECPQR 263
           +   K PATKP EN +KKKVDN+YNRPTLGKCF+C QQGH SNEC QR
Sbjct: 181 DIPPKNPATKPSENISKKKVDNVYNRPTLGKCFRCSQQGHRSNECHQR 169

[Close]

BLAST of CSPI03G20690 vs. NCBI nr
Match: XP_022138328.1 (uncharacterized protein LOC111009540 isoform X2 [Momordica charantia])

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-50
Identity = 137/342 (40.06%), Postives = 191/342 (55.85%), Query Frame = 0


Query: 1   DSDSSD-EDNFLNIH------QEPKQRLGLRPYFQEDQEIRMKVDLPTFNGRMDVEKFLD 60
           DSD+SD ++ FL  H      +   +R G+R  F      +MK+DLPTFNG+MDVE FLD
Sbjct: 112 DSDTSDGDEGFLQQHPRFAREEHYVERGGVRTDF------KMKIDLPTFNGKMDVETFLD 171

Query: 61  WIKNVEIFFDYANTPEHKKVRLVALKLQGGASAWWDQ----------------------- 120
            +KNVE FFDY NTPE KKV+LVA K+Q GASAWWDQ                       
Sbjct: 172 RVKNVENFFDYTNTPEDKKVKLVAFKIQSGASAWWDQLEINCRRLGKQPIRSWPRMLRLM 231

Query: 121 --------FKTIDDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRD 180
                   F+ +    YQ+C QG ++I DYTE F+ LGA+ N+ ETE  +I+RF+ GLR+
Sbjct: 232 RERFLPPNFEQLLYQPYQRCRQGFKTIADYTEAFHRLGAKTNIAETEDYKIARFVDGLRE 291

Query: 181 EIKDIVHLHPLTFLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQ--QRTNLTNSFRNFQ 240
           +I+D + + P+  L+DAI +A+KIED    K+ +   R+  WDK    +T  T++ +  Q
Sbjct: 292 DIQDQMDIQPIHLLTDAIVMATKIEDK---KRLRTPARRTPWDKPSISKTATTDTGKPLQ 351

Query: 241 QGSSSTTSQLAKKDENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECP 300
            G++S  S     D+ +   P   P  + + K+  N Y RPTLGKCF+CGQ  H SNECP
Sbjct: 352 IGTTS-ASTTKPPDDPAKSSPFKTP--DTSSKRGTNPYIRPTLGKCFRCGQVDHLSNECP 411

Query: 301 QREFFSPLRLDKYLKGIPSFEQDAPLTEDLGNMTQITFIEED 303
           QR   + +  D  L+     + D P  +D       T++E D
Sbjct: 412 QRRALALVDQDDLLE----TDIDLPTEDD------PTYVEPD 431

[Close]

BLAST of CSPI03G20690 vs. NCBI nr
Match: XP_022138327.1 (uncharacterized protein LOC111009540 isoform X1 [Momordica charantia])

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-50
Identity = 137/342 (40.06%), Postives = 191/342 (55.85%), Query Frame = 0


Query: 1   DSDSSD-EDNFLNIH------QEPKQRLGLRPYFQEDQEIRMKVDLPTFNGRMDVEKFLD 60
           DSD+SD ++ FL  H      +   +R G+R  F      +MK+DLPTFNG+MDVE FLD
Sbjct: 112 DSDTSDGDEGFLQQHPRFAREEHYVERGGVRTDF------KMKIDLPTFNGKMDVETFLD 171

Query: 61  WIKNVEIFFDYANTPEHKKVRLVALKLQGGASAWWDQ----------------------- 120
            +KNVE FFDY NTPE KKV+LVA K+Q GASAWWDQ                       
Sbjct: 172 RVKNVENFFDYTNTPEDKKVKLVAFKIQSGASAWWDQLEINCRRLGKQPIRSWPRMLRLM 231

Query: 121 --------FKTIDDYSYQQCHQGSRSIMDYTEDFYPLGARNNLFETEHQQISRFIHGLRD 180
                   F+ +    YQ+C QG ++I DYTE F+ LGA+ N+ ETE  +I+RF+ GLR+
Sbjct: 232 RERFLPPNFEQLLYQPYQRCRQGFKTIADYTEAFHRLGAKTNIAETEDYKIARFVDGLRE 291

Query: 181 EIKDIVHLHPLTFLSDAISLASKIEDSEEIKKTKNSQRKNNWDKQ--QRTNLTNSFRNFQ 240
           +I+D + + P+  L+DAI +A+KIED    K+ +   R+  WDK    +T  T++ +  Q
Sbjct: 292 DIQDQMDIQPIHLLTDAIVMATKIEDK---KRLRTPARRTPWDKPSISKTATTDTGKPLQ 351

Query: 241 QGSSSTTSQLAKKDENSSKIPATKPGENNAKKKVDNIYNRPTLGKCFKCGQQGHFSNECP 300
            G++S  S     D+ +   P   P  + + K+  N Y RPTLGKCF+CGQ  H SNECP
Sbjct: 352 IGTTS-ASTTKPPDDPAKSSPFKTP--DTSSKRGTNPYIRPTLGKCFRCGQVDHLSNECP 411

Query: 301 QREFFSPLRLDKYLKGIPSFEQDAPLTEDLGNMTQITFIEED 303
           QR   + +  D  L+     + D P  +D       T++E D
Sbjct: 412 QRRALALVDQDDLLE----TDIDLPTEDD------PTYVEPD 431

The following BLAST results are available for this feature:

BLAST of CSPI03G20690 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G20690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DJC1	2.7e-105	70.79	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7T7L8	5.1e-59	60.09	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3E462	1.1e-58	60.09	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1CCQ8	8.6e-51	40.06	uncharacterized protein LOC111009540 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CAS9	8.6e-51	40.06	uncharacterized protein LOC111009540 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CSPI03G20690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058889.1	5.7e-105	70.79	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK23734.1 Tran...	[more]
KAA0038206.1	1.0e-58	60.09	uncharacterized protein E6C27_scaffold270G00430 [Cucumis melo var. makuwa]	[more]
TYK30599.1	2.3e-58	60.09	uncharacterized protein E5676_scaffold84664G00070 [Cucumis melo var. makuwa]	[more]
XP_022138328.1	1.8e-50	40.06	uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]	[more]
XP_022138327.1	1.8e-50	40.06	uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]	[more]

BLAST of CSPI03G20690 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 245..261 e-value: 5.1E-5 score: 32.7
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 244..261 e-value: 8.9E-7 score: 28.7
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 245..261 score: 11.053757
None	No IPR available	GENE3D	4.10.60.10		coord: 239..264 e-value: 1.6E-7 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..224
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..232
None	No IPR available	PANTHER	PTHR35046	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 5..265
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 244..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20690.1	CSPI03G20690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding