CSPI03G20590 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G20590
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	30S ribosomal protein 3, chloroplastic-like
Location	Chr3: 16569242 .. 16571870 (+)
RNA-Seq Expression	CSPI03G20590
Synteny	CSPI03G20590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATATTGCACCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCCATCTCCGAACGCACTCTCTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAATGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTTCAAAACCGTTCAAACTTCCTTTTGCTGTGAGGCAAAGAACCACCGCTTCTTCCTGCATTCCCAACTTCCATTCTGTTTTTGGCTTGCAATTGAGGCGCCAGAACTTCAGAACTCAAGAAATCTCTGCTTCTGCTGCGCCCATTGAAGCTGTCGAAGCTGCTTCAGAATTGCTTGTTGCTGATGATTCCGACTCCGTCTCTTCTCCTGTTAAGGAGGTCTCTCTCTCTCTCTTCCTCCCTTTCTATCTCGTCTGATTGCTCAGTTTAGTTTCGTTCGTTTTCAGCAAGTTGAAAAATGAATCCTTGTTTTTTCTGCTGGATGGAGATCGTCTGATATTTGGGGGAGAGCTACCGAAAGTTTGGTAAACAAACAGTACTGTCGTTTCTTAGTTAGTTGAGAGGGGCGGATTTATTGGTGAATTTGGTTACTTGAAAGCTCGTTCTATTTCTAAATTTTTTTTTGTTTCTTTTTTTTAAATGTTCTTGCTTTCATTTCAGTTTTTGGTTCTTTTCAAAGAAACTGCTTGAATTCATTGAGATCCTATAGCTTACTGTGGCTATGTATTGTACATTGTTTGTTTGATCGAGTAGTGTTGTTTTCTCTATGAACACATGGTAGAAATTCTGGTATAACGAATTACTAATACTTTGTGAGTAACTTGGAAGATAGGTTCTAACAAGAATGTTGATGTTGATTTTCATGGATCCCTAAAAGTTTATAATTTGAAATGAACGTATTGAAGAATATCAATTCTCATACAGTAGTTAAATGATTGATGCAGCATTAACATTAAATTGTTAATTTTATTAATTCCAAATTGAAGTTTGAATAAGTAATGAATTAATACTCCTTGTTGGCTGAATTGCTATTTTCTCTAGGTTTCTGGTTATATCTGTGTTATTGTGATTTCAATTGGGACGTGGTTGGTTTTTTGAATGCTCATTTTATTATTGCCTTGCCTTGAGCATTTATTTAGGGTTGGTTTTGGTTTTTTGTTGTTAGGTTTGAGCATTGCTTTAATTGTTAAACTTTATCACTTTGTGGCTGGATTTGGATGTCTCTTCACCAAGTTTTGGATATTGTATTTGGAATTTGATTTTTTTAGCTAAATTTAAGTGATATTTTGCTGCTTTTCGAACAATACTCTAGTTTCGTTTTGTGAGATTTCAGTTTCATCAATATTTCAGTTTAAATTTCAATTCGATAAAGTTATAACTTAGCCTCGTAGGCTAATGTATATGTAGTTCTTTTCTTTTCCCCTCCCTTTGTCCATACCTTAAGGGGATGCTTTTTGCTTGCTGATTAACCTAGGTTTAGTTTGTATTTGCGTAATCTACCCCTAGAATTTGTAAAGGAATGAGTTGTAGAAATCTTGGTATGTGTAAAATATGTTTTGTTTAAGTTCAACTATAAAACCTGTGGTTTCATTTTGTTATATGTATGTAACCTTTGTTGTTGTAGCTTGTGGAATTAGCTAACTGTTGACCTGTGGGATAAGAATCGTAATTTGGATAAATAAGCTCATGTACTAAAGTTTAGTCATACCTCTTTGCTATCTTAACATTCAGCTACACAAATACAACTTGTGTGCTAATCAAGTCCTAAAGATATCTTTTATGTTACACTAAATAATATCTAGAACAACTCTAAGCATATGTAGTTTTTTAACAAGTATTTACTATAAACAAACTCATACTTTCCCCACTTGGCTTTACTTTAACCATATTAGGAGTCTTAGAGGTAATCTCCCTCCCTTTGATAAGATGATATCAACATCAAATACTGAAACTGACTGTACAACAGTGAAACTCTTTTTATTCTCATTATTTTTGTGAAACACAATTAAACAAGTACTGGTATTTTGATTTTATAGTTTCCTTTTGCTTTTACAAATGAAAACTTGAGCAAAATAGATTTATCAGGAAGCCCTTCTCTGGCAAATTATACATTTTGACGATTCATTTTTTAATGTTATAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTTATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCGTACTACTTTTGGCCTCGGAAAGATGCATGGGAAGAACTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATTCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAAGCTCCAATGTAAAAAGTTTCAAATTTTTTTGATAGTGGTCTTAGATTGTGACTATTCTTGAATCGTACGGCTGTTCAGATGTCCTTTTTCGTATATTCTGAAGTAATTTTATAATTTATAAATGACTCATCTTTTGTTGTATATTATGTTGGTTGTGTAACCCATCTACAGTTCACATTTTCCGTTGAAAGTTTTGTTCATATTCAATATGAAAACCTATTATTT

mRNA sequence

ATGCATATTGCACCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCCATCTCCGAACGCACTCTCTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAATGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTTCAAAACCGTTCAAACTTCCTTTTGCTGTGAGGCAAAGAACCACCGCTTCTTCCTGCATTCCCAACTTCCATTCTGTTTTTGGCTTGCAATTGAGGCGCCAGAACTTCAGAACTCAAGAAATCTCTGCTTCTGCTGCGCCCATTGAAGCTGTCGAAGCTGCTTCAGAATTGCTTGTTGCTGATGATTCCGACTCCGTCTCTTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTTATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCGTACTACTTTTGGCCTCGGAAAGATGCATGGGAAGAACTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATTCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAAGCTCCAATGTAAAAAGTTTCAAATTTTTTTGATAGTGGTCTTAGATTGTGACTATTCTTGAATCGTACGGCTGTTCAGATGTCCTTTTTCGTATATTCTGAAGTAATTTTATAATTTATAAATGACTCATCTTTTGTTGTATATTATGTTGGTTGTGTAACCCATCTACAGTTCACATTTTCCGTTGAAAGTTTTGTTCATATTCAATATGAAAACCTATTATTT

Coding sequence (CDS)

ATGCATATTGCACCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCCATCTCCGAACGCACTCTCTATGATGTTATCCATGGCAGTTCAACTTCAGCCCAATGTTAATTTCTGTTTCAATACCTCCAATTTCACTGCCCAAACCGCTTCAAAACCGTTCAAACTTCCTTTTGCTGTGAGGCAAAGAACCACCGCTTCTTCCTGCATTCCCAACTTCCATTCTGTTTTTGGCTTGCAATTGAGGCGCCAGAACTTCAGAACTCAAGAAATCTCTGCTTCTGCTGCGCCCATTGAAGCTGTCGAAGCTGCTTCAGAATTGCTTGTTGCTGATGATTCCGACTCCGTCTCTTCTCCTGTTAAGGAGAAACTGGGAGTGGTTGTGAAACCGATGGAAAAGCCAAGGCTTGTGCTAAAGTTTATATGGATGGAGAAGAACATTGGTATTGCACTTGATCAAATGATTCCTGGTCATGGAACTATTCCTCTTAGCCCGTACTACTTTTGGCCTCGGAAAGATGCATGGGAAGAACTCAAAGTCTTACTTGAGAGCAAGCCCTGGATTTCTCAAAAGCAGATGATTATTCTCCTTAATCAGGCAACTGACATCATCAATTTGTGGCAGCAGGGTGGAGGCAACCTGGCTTAA

Protein sequence

MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHSVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA*

Homology

[Close]

BLAST of CSPI03G20590 vs. ExPASy Swiss-Prot
Match: P82412 (30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.9e-50
Identity = 116/192 (60.42%), Postives = 133/192 (69.27%), Query Frame = 0


Query: 23  MLSMAVQLQPNVNFCFNTSNFTAQTAS-KPFKLPFAVRQRTTASSCIPNFHSVFGLQLRR 82
           MLSMAV  QPN+N     S + +   S KPFK P     +   SS  P+F      QL++
Sbjct: 1   MLSMAV--QPNINAIAKPSIYQSPKLSLKPFKTPAFANPKPFFSS--PSFS-----QLKK 60

Query: 83  QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 142
           +N     +  +   I  V      +  DD   V+   KEKL V+VKPM+KPRLVLKFIWM
Sbjct: 61  KN--NWSLFVAPETISDVAIMGNEVDIDDDLLVN---KEKLKVLVKPMDKPRLVLKFIWM 120

Query: 143 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 202
           EKNIG+ALDQ IPGHGT+PLSPYYFWPRKDAWEELKVLLE+KPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGLALDQTIPGHGTVPLSPYYFWPRKDAWEELKVLLENKPWISQKQMIILLNQATDI 178

Query: 203 INLWQQGGGNLA 214
           INLWQQ GGNLA
Sbjct: 181 INLWQQSGGNLA 178

[Close]

BLAST of CSPI03G20590 vs. ExPASy Swiss-Prot
Match: Q9SX22 (30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g68590 PE=1 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.9e-40
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 101 AASELLVADDSDSV--SSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGT 160
           AA E L A+    +  S    ++   VVKP EK R+VLKF+WMEKNIG+ LDQ +PGHGT
Sbjct: 50  AAPETLTAETVTGIDTSDNTPQQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGT 109

Query: 161 IPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 213
           IPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 110 IPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of CSPI03G20590 vs. ExPASy Swiss-Prot
Match: Q9LFV0 (30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g15760 PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.9e-40
Identity = 89/189 (47.09%), Postives = 120/189 (63.49%), Query Frame = 0


Query: 26  MAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHSVFGLQLRRQNFR 85
           MAVQ   + +F F T++ + + +SKP      +   + ++   P+           Q   
Sbjct: 1   MAVQANQSASFGFRTASPSQKLSSKP------IAHISLSTKLKPSSRPSLSCSTWNQGQI 60

Query: 86  TQEISASAAPIEAVEAASELLVADDSDSVSSPV-KEKLGVVVKPMEKPRLVLKFIWMEKN 145
               S     I A   ++     +  +S S P+ K+K+ V+VKP+EKP++VLKF+WM+K+
Sbjct: 61  PARHSCINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKD 120

Query: 146 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 205
           IG+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATDIINL
Sbjct: 121 IGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINL 180

Query: 206 WQQGGGNLA 214
           WQ  GG+L+
Sbjct: 181 WQSSGGDLS 183

[Close]

BLAST of CSPI03G20590 vs. ExPASy Swiss-Prot
Match: O48609 (30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.0e-39
Identity = 96/178 (53.93%), Postives = 113/178 (63.48%), Query Frame = 0


Query: 44  TAQTASKP-FKLPFAVRQRTTASSCIPNFHSVFGLQLRRQNFRTQEISASAAPIEAVEAA 103
           T   AS+P   LP   R  T +SS      S+  L+ RR   R+     +AA   AVEA 
Sbjct: 11  TPALASRPRVSLP---RPSTPSSS-----SSLVHLKSRRPPLRSLRSLTAAAAAAAVEAG 70

Query: 104 SELL-------VADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPG 163
                      +  + D+ +    E+  V V   + P LVLKFIWMEKNIGIALDQM+PG
Sbjct: 71  EPYFGLGDDEPLGGEGDAEAVVESEEYKVEVPEKQDPMLVLKFIWMEKNIGIALDQMVPG 130

Query: 164 HGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNLA 214
            G+IPLSPYYFWPRKDAWEEL+  LE K WISQKQMIILLNQATDIINLWQQGGG+L+
Sbjct: 131 VGSIPLSPYYFWPRKDAWEELRAKLEEKEWISQKQMIILLNQATDIINLWQQGGGSLS 180

[Close]

BLAST of CSPI03G20590 vs. ExPASy Swiss-Prot
Match: P51351 (Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=ycf65 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.4e-22
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 133 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 192
           +  LK +W+E NI IA+DQ++ G+GT PL+ Y+FWPR DAWEELK  LESKPWI+++  I
Sbjct: 3   KFTLKVLWLENNIAIAIDQIV-GNGTSPLTSYFFWPRNDAWEELKAELESKPWIAERDRI 62

Query: 193 ILLNQATDIINLWQQGG 210
            LLN+ T++IN WQ+ G
Sbjct: 63  ELLNKTTEVINYWQEEG 78

[Close]

BLAST of CSPI03G20590 vs. ExPASy TrEMBL
Match: A0A0A0L9T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1)

HSP 1 Score: 417.5 bits (1072), Expect = 3.3e-113
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ 60
           MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ
Sbjct: 1   MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ 60

Query: 61  RTTASSCIPNFHSVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE 120
           RTTASSCIPNFH+VFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE
Sbjct: 61  RTTASSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE 120

Query: 121 KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL 180
           KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL
Sbjct: 121 KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL 180

Query: 181 ESKPWISQKQMIILLNQATDIINLWQQGGGNLA 214
           ESKPWISQKQMIILLNQATDIINLWQQGGGNLA
Sbjct: 181 ESKPWISQKQMIILLNQATDIINLWQQGGGNLA 213

[Close]

BLAST of CSPI03G20590 vs. ExPASy TrEMBL
Match: A0A1S3CF24 (30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500153 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.6e-97
Identity = 181/192 (94.27%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHSVFGLQLRR 81
           MMLSMAVQLQPNV+FCFNTSNFTAQ ASKPF+LPFAV+QRTTASSCIPNFHSVFGL+LRR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPASKPFQLPFAVKQRTTASSCIPNFHSVFGLKLRR 60

Query: 82  QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 141
           QN RTQEISASA   EAVEAASE LV DDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM
Sbjct: 61  QNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 120

Query: 142 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 201
           EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 180

Query: 202 INLWQQGGGNLA 214
           INLWQQGGGNLA
Sbjct: 181 INLWQQGGGNLA 192

[Close]

BLAST of CSPI03G20590 vs. ExPASy TrEMBL
Match: A0A5D3CJH0 (30S ribosomal protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00620 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.3e-93
Identity = 178/192 (92.71%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHSVFGLQLRR 81
           MMLSMAVQLQPNV+FCFNTSNFTAQ ASKPF+LPFAV+QRTTASSCIPNFHSVFGL+LRR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPASKPFQLPFAVKQRTTASSCIPNFHSVFGLKLRR 60

Query: 82  QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 141
           QN RTQEISASA   EAVEAASE LV DDSDSVSSP   KLGVVVKPMEKPRLVLKFIWM
Sbjct: 61  QNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSP---KLGVVVKPMEKPRLVLKFIWM 120

Query: 142 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 201
           EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 180

Query: 202 INLWQQGGGNLA 214
           INLWQQGGGNLA
Sbjct: 181 INLWQQGGGNLA 189

[Close]

BLAST of CSPI03G20590 vs. ExPASy TrEMBL
Match: A0A6J1D356 (30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016859 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.5e-81
Identity = 163/202 (80.69%), Postives = 170/202 (84.16%), Query Frame = 0


Query: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTA----------SSCIPN 81
           MMLSMAVQLQPN+NFC NTSNF AQ A SKPF++ F V+QRTTA          SSCI +
Sbjct: 1   MMLSMAVQLQPNINFCLNTSNFPAQNATSKPFQVLFPVKQRTTASYSLSPSSSTSSCIAH 60

Query: 82  FHSVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPME 141
            H   G + RRQNFR  E+SA AA  EAVEAASE  V DDSDSVSSPVKEKLGVVVKPME
Sbjct: 61  SHYFSGFKFRRQNFRNLEVSAPAAATEAVEAASESPVVDDSDSVSSPVKEKLGVVVKPME 120

Query: 142 KPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 201
           K RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ
Sbjct: 121 KSRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQ 180

Query: 202 MIILLNQATDIINLWQQGGGNL 213
           MIILLNQATDIINLWQQGGGNL
Sbjct: 181 MIILLNQATDIINLWQQGGGNL 202

[Close]

BLAST of CSPI03G20590 vs. ExPASy TrEMBL
Match: A0A6J1K853 (30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111492568 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.5e-78
Identity = 157/201 (78.11%), Postives = 173/201 (86.07%), Query Frame = 0


Query: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTA--------SSCIPNFH 81
           MMLSMAVQLQPNVNFC NTS F++  A SKP ++PFA++QRT A        SSCI + +
Sbjct: 1   MMLSMAVQLQPNVNFCLNTSTFSSHNATSKPHQVPFALKQRTNALSSPSSSISSCIADVY 60

Query: 82  SVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKP 141
           SV GL+LRRQ+F+T ++SASAA  +AV+A SE  VADDS S SSP KEKLGVVVKPMEKP
Sbjct: 61  SVSGLKLRRQSFKTLQVSASAAAADAVQADSESPVADDSLSESSPDKEKLGVVVKPMEKP 120

Query: 142 RLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 201
           RLVLKFIWMEKNIGI LDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI
Sbjct: 121 RLVLKFIWMEKNIGIGLDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMI 180

Query: 202 ILLNQATDIINLWQQGGGNLA 214
           ILLNQATDIINLWQQGGG+LA
Sbjct: 181 ILLNQATDIINLWQQGGGSLA 201

[Close]

BLAST of CSPI03G20590 vs. NCBI nr
Match: XP_004145640.2 (30S ribosomal protein 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 417.5 bits (1072), Expect = 6.8e-113
Identity = 212/213 (99.53%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ 60
           MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ
Sbjct: 1   MHIAPSSSSSSSFSPSPNALSMMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQ 60

Query: 61  RTTASSCIPNFHSVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE 120
           RTTASSCIPNFH+VFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE
Sbjct: 61  RTTASSCIPNFHTVFGLQLRRQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKE 120

Query: 121 KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL 180
           KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL
Sbjct: 121 KLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLL 180

Query: 181 ESKPWISQKQMIILLNQATDIINLWQQGGGNLA 214
           ESKPWISQKQMIILLNQATDIINLWQQGGGNLA
Sbjct: 181 ESKPWISQKQMIILLNQATDIINLWQQGGGNLA 213

[Close]

BLAST of CSPI03G20590 vs. NCBI nr
Match: KGN57759.2 (hypothetical protein Csa_011376 [Cucumis sativus])

HSP 1 Score: 376.7 bits (966), Expect = 1.3e-100
Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 26  MAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHSVFGLQLRRQNFR 85
           MAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFH+VFGLQLRRQNFR
Sbjct: 1   MAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHTVFGLQLRRQNFR 60

Query: 86  TQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNI 145
           TQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNI
Sbjct: 61  TQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWMEKNI 120

Query: 146 GIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLW 205
           GIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLW
Sbjct: 121 GIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLW 180

Query: 206 QQGGGNLA 214
           QQGGGNLA
Sbjct: 181 QQGGGNLA 188

[Close]

BLAST of CSPI03G20590 vs. NCBI nr
Match: XP_008461583.1 (PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo])

HSP 1 Score: 362.8 bits (930), Expect = 2.0e-96
Identity = 181/192 (94.27%), Postives = 185/192 (96.35%), Query Frame = 0


Query: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHSVFGLQLRR 81
           MMLSMAVQLQPNV+FCFNTSNFTAQ ASKPF+LPFAV+QRTTASSCIPNFHSVFGL+LRR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPASKPFQLPFAVKQRTTASSCIPNFHSVFGLKLRR 60

Query: 82  QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 141
           QN RTQEISASA   EAVEAASE LV DDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM
Sbjct: 61  QNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 120

Query: 142 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 201
           EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 180

Query: 202 INLWQQGGGNLA 214
           INLWQQGGGNLA
Sbjct: 181 INLWQQGGGNLA 192

[Close]

BLAST of CSPI03G20590 vs. NCBI nr
Match: KAA0063423.1 (30S ribosomal protein 3 [Cucumis melo var. makuwa] >TYK11685.1 30S ribosomal protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 352.4 bits (903), Expect = 2.7e-93
Identity = 178/192 (92.71%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHSVFGLQLRR 81
           MMLSMAVQLQPNV+FCFNTSNFTAQ ASKPF+LPFAV+QRTTASSCIPNFHSVFGL+LRR
Sbjct: 1   MMLSMAVQLQPNVHFCFNTSNFTAQPASKPFQLPFAVKQRTTASSCIPNFHSVFGLKLRR 60

Query: 82  QNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIWM 141
           QN RTQEISASA   EAVEAASE LV DDSDSVSSP   KLGVVVKPMEKPRLVLKFIWM
Sbjct: 61  QNLRTQEISASAVSTEAVEAASESLVTDDSDSVSSP---KLGVVVKPMEKPRLVLKFIWM 120

Query: 142 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 201
           EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI
Sbjct: 121 EKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDI 180

Query: 202 INLWQQGGGNLA 214
           INLWQQGGGNLA
Sbjct: 181 INLWQQGGGNLA 189

[Close]

BLAST of CSPI03G20590 vs. NCBI nr
Match: XP_038875586.1 (30S ribosomal protein 3, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 337.8 bits (865), Expect = 6.8e-89
Identity = 171/193 (88.60%), Postives = 178/193 (92.23%), Query Frame = 0


Query: 22  MMLSMAVQLQPNVNFCFNTSNFTAQTA-SKPFKLPFAVRQRTTASSCIPNFHSVFGLQLR 81
           MMLSMAVQLQPNVNFCFNTSNFTAQTA SKPF++PFAV+QR+T+SSCI N HSV   +LR
Sbjct: 1   MMLSMAVQLQPNVNFCFNTSNFTAQTATSKPFQVPFAVKQRSTSSSCITNLHSVSASKLR 60

Query: 82  RQNFRTQEISASAAPIEAVEAASELLVADDSDSVSSPVKEKLGVVVKPMEKPRLVLKFIW 141
            QNFRT +ISASA   EA EAA E LVADDSDS SSPVKEKLGVVVKPMEKPRLVLKFIW
Sbjct: 61  HQNFRTLDISASATAAEAAEAAPESLVADDSDSESSPVKEKLGVVVKPMEKPRLVLKFIW 120

Query: 142 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 201
           MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD
Sbjct: 121 MEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATD 180

Query: 202 IINLWQQGGGNLA 214
           IINLWQQGGGNLA
Sbjct: 181 IINLWQQGGGNLA 193

[Close]

BLAST of CSPI03G20590 vs. TAIR 10
Match: AT1G68590.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 165.2 bits (417), Expect = 5.6e-41
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 101 AASELLVADDSDSV--SSPVKEKLGVVVKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGT 160
           AA E L A+    +  S    ++   VVKP EK R+VLKF+WMEKNIG+ LDQ +PGHGT
Sbjct: 50  AAPETLTAETVTGIDTSDNTPQQTIKVVKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGT 109

Query: 161 IPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINLWQQGGGNL 213
           IPLSPY+FWPRKDAWEELK  LE+KPWISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 110 IPLSPYFFWPRKDAWEELKSTLEAKPWISQKKMIILLNQATDIINLWQQSGGNL 163

[Close]

BLAST of CSPI03G20590 vs. TAIR 10
Match: AT5G15760.1 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 165.2 bits (417), Expect = 5.6e-41
Identity = 89/189 (47.09%), Postives = 120/189 (63.49%), Query Frame = 0


Query: 26  MAVQLQPNVNFCFNTSNFTAQTASKPFKLPFAVRQRTTASSCIPNFHSVFGLQLRRQNFR 85
           MAVQ   + +F F T++ + + +SKP      +   + ++   P+           Q   
Sbjct: 1   MAVQANQSASFGFRTASPSQKLSSKP------IAHISLSTKLKPSSRPSLSCSTWNQGQI 60

Query: 86  TQEISASAAPIEAVEAASELLVADDSDSVSSPV-KEKLGVVVKPMEKPRLVLKFIWMEKN 145
               S     I A   ++     +  +S S P+ K+K+ V+VKP+EKP++VLKF+WM+K+
Sbjct: 61  PARHSCINPGIFAYPPSNLTFSHELPESESPPLGKKKMRVLVKPLEKPKVVLKFVWMQKD 120

Query: 146 IGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPWISQKQMIILLNQATDIINL 205
           IG+ALD MIPG GTIPLSPYYFWPRKDAWEELK LLESKPWIS+   + LLNQATDIINL
Sbjct: 121 IGVALDHMIPGFGTIPLSPYYFWPRKDAWEELKTLLESKPWISELHRVFLLNQATDIINL 180

Query: 206 WQQGGGNLA 214
           WQ  GG+L+
Sbjct: 181 WQSSGGDLS 183

[Close]

BLAST of CSPI03G20590 vs. TAIR 10
Match: AT1G68590.2 (Ribosomal protein PSRP-3/Ycf65 )

HSP 1 Score: 163.7 bits (413), Expect = 1.6e-40
Identity = 72/87 (82.76%), Postives = 80/87 (91.95%), Query Frame = 0


Query: 126 VKPMEKPRLVLKFIWMEKNIGIALDQMIPGHGTIPLSPYYFWPRKDAWEELKVLLESKPW 185
           +KP EK R+VLKF+WMEKNIG+ LDQ +PGHGTIPLSPY+FWPRKDAWEELK  LE+KPW
Sbjct: 74  IKPDEKSRVVLKFVWMEKNIGLGLDQHVPGHGTIPLSPYFFWPRKDAWEELKSTLEAKPW 133

Query: 186 ISQKQMIILLNQATDIINLWQQGGGNL 213
           ISQK+MIILLNQATDIINLWQQ GGNL
Sbjct: 134 ISQKKMIILLNQATDIINLWQQSGGNL 160

The following BLAST results are available for this feature:

BLAST of CSPI03G20590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82412	2.9e-50	60.42	30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP3 PE=...	[more]
Q9SX22	7.9e-40	70.18	30S ribosomal protein 3-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]
Q9LFV0	7.9e-40	47.09	30S ribosomal protein 3-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]
O48609	3.0e-39	53.93	30S ribosomal protein 3, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSRP3 PE=2 ...	[more]
P51351	7.4e-22	57.14	Probable 30S ribosomal protein 3, chloroplastic OS=Porphyra purpurea OX=2787 GN=...	[more]

BLAST of CSPI03G20590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9T8	3.3e-113	99.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271370 PE=3 SV=1	[more]
A0A1S3CF24	9.6e-97	94.27	30S ribosomal protein 3, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A5D3CJH0	1.3e-93	92.71	30S ribosomal protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1D356	2.5e-81	80.69	30S ribosomal protein 3, chloroplastic-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1K853	1.5e-78	78.11	30S ribosomal protein 3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CSPI03G20590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145640.2	6.8e-113	99.53	30S ribosomal protein 3, chloroplastic [Cucumis sativus]	[more]
KGN57759.2	1.3e-100	99.47	hypothetical protein Csa_011376 [Cucumis sativus]	[more]
XP_008461583.1	2.0e-96	94.27	PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Cucumis melo]	[more]
KAA0063423.1	2.7e-93	92.71	30S ribosomal protein 3 [Cucumis melo var. makuwa] >TYK11685.1 30S ribosomal pro...	[more]
XP_038875586.1	6.8e-89	88.60	30S ribosomal protein 3, chloroplastic-like [Benincasa hispida]	[more]

BLAST of CSPI03G20590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68590.1	5.6e-41	70.18	Ribosomal protein PSRP-3/Ycf65	[more]
AT5G15760.1	5.6e-41	47.09	Ribosomal protein PSRP-3/Ycf65	[more]
AT1G68590.2	1.6e-40	82.76	Ribosomal protein PSRP-3/Ycf65	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038447	PSRP-3/Ycf65 superfamily	GENE3D	3.30.390.140		coord: 133..211 e-value: 3.4E-33 score: 115.5
IPR006924	Ribosomal protein PSRP-3/Ycf65	PFAM	PF04839	PSRP-3_Ycf65	coord: 161..207 e-value: 1.2E-26 score: 92.6
IPR006924	Ribosomal protein PSRP-3/Ycf65	PANTHER	PTHR35108	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 23..213
None	No IPR available	PANTHER	PTHR35108:SF1	30S RIBOSOMAL PROTEIN 3, CHLOROPLASTIC	coord: 23..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20590.1	CSPI03G20590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups
molecular_function	GO:0003735	structural constituent of ribosome