CSPI03G20310 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G20310
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	MADS-box domain-containing protein
Location	Chr3: 16120154 .. 16120804 (-)
RNA-Seq Expression	CSPI03G20310
Synteny	CSPI03G20310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCTTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACATTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

mRNA sequence

ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCTTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACATTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

Coding sequence (CDS)

ATGGGGAGAGGAATATTAAGTCTTAAGCTCATTCCCAATCCCAAAAGTCGAAGAACAACCTTTCTTAAGAGGAAGAAAAGTCTGATTAAGAAGGCTTACGAGCTTTCCACCCTTTGCGATGTTCAAACTTGCCTTTTCATTGCTTCTGACTGTGACCCCTCCACTCACTTCGAAACTTGGCCTCCCAATCATCACCAAATCCACCAGATGATCCGTTCTTATAAATCCCACTCTTTCACCAAACCCAACTCCTCTTATGATCTTAACCGCTTCTTCTCTGATCGCAAGAACAAAATCCTAACTAACACATCTAAACTTCTCCACAATGTTGTGGATCACCAATCCGAACATCAATTGATGGAGTTGTTGGATGCTTTGGATTCCAAGATTAGAGTTGCAAACGACATGATTGAGTTCATGGAGGCCGATTATGATCACTTGATTGACCAAGCAATTGGCATGGATACACCTCCTTCCCAAACAGAGGATGAGGAAACCACTCAATTTAACATTTCAGACCTTTTTAATGAGCCAGATGAGTTTGAAGAATACAACGTCGAGGGTTTCCAATCTCTGCTTGAGGACAAGTTTCTGGAAACTCTGGTTCAGAACAATCCCATTCCAGACTTTGATTTTGATTTTGATTACTAA

Protein sequence

MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETWPPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNISDLFNEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY*

Homology

[Close]

BLAST of CSPI03G20310 vs. ExPASy Swiss-Prot
Match: Q9FIM0 (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.3e-09
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 0


Query: 5   ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 65  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 124
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 125 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP-PSQTEDEETTQFN 184
           D  S  QL  +  A+DSK+   N+ +   E     +  QA  MDTP P    D+   QF 
Sbjct: 125 DKCSREQLHGIFCAVDSKL---NEAVTRQERSMFRVNHQA--MDTPFPQNLMDQ---QF- 184

[Close]

BLAST of CSPI03G20310 vs. ExPASy Swiss-Prot
Match: P29383 (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 8.1e-08
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 121 LMELLDALD 128
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]

BLAST of CSPI03G20310 vs. ExPASy Swiss-Prot
Match: Q38694 (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah OX=29714 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-07
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 1  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASD 51
          MGRG + LK+I N  +R+ TF KR+K L+KKAYELS LCD +  L I S+
Sbjct: 1  MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSN 50

[Close]

BLAST of CSPI03G20310 vs. ExPASy Swiss-Prot
Match: F6I457 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.9e-07
Identity = 46/166 (27.71%), Postives = 81/166 (48.80%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + +K I N  +R+ TF KR+  L+KKAYELS LCD +  L +      S+    +
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-----SSRGRVY 60

Query: 61  PPNHHQIHQMIRSYK--SHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120
             +++ I   I  YK  S   T   S+ ++N  +  +++  L    ++L N   H     
Sbjct: 61  EYSNNNIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDS 120

Query: 121 LMEL----LDALDSKI-----RVANDMIEFMEADYDHLIDQAIGMD 156
           L  L    L  L++++     R+ +   E + A+ ++L  + I ++
Sbjct: 121 LASLTVKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELE 161

[Close]

BLAST of CSPI03G20310 vs. ExPASy Swiss-Prot
Match: A0A217EJJ0 (Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.9e-07
Identity = 46/166 (27.71%), Postives = 81/166 (48.80%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + +K I N  +R+ TF KR+  L+KKAYELS LCD +  L +      S+    +
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVF-----SSRGRVY 60

Query: 61  PPNHHQIHQMIRSYK--SHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120
             +++ I   I  YK  S   T   S+ ++N  +  +++  L    ++L N   H     
Sbjct: 61  EYSNNNIKSTIDRYKKASSDSTNGGSTMEINAQYYQQESAKLRQQIQMLQNSNRHLMGDS 120

Query: 121 LMEL----LDALDSKI-----RVANDMIEFMEADYDHLIDQAIGMD 156
           L  L    L  L++++     R+ +   E + A+ ++L  + I ++
Sbjct: 121 LASLTVKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELE 161

[Close]

BLAST of CSPI03G20310 vs. ExPASy TrEMBL
Match: A0A0A0LAL9 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G258140 PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 1.5e-118
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNISDLFNEPDE 180
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFN+SDLFNEPDE
Sbjct: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180

Query: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 217
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 216

[Close]

BLAST of CSPI03G20310 vs. ExPASy TrEMBL
Match: A0A6J1F370 (agamous-like MADS-box protein AGL6 OS=Cucurbita moschata OX=3662 GN=LOC111441717 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.9e-45
Identity = 119/210 (56.67%), Postives = 142/210 (67.62%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG LSLKLI NPKSRRTTF KRKKSL+KKAYELSTLCDVQTC+ IAS+      FETW
Sbjct: 1   MGRGTLSLKLISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASE-----EFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPN--SSYDLNRFFSDRKNKILTNTSKLLHNV-------- 120
           P +  Q+  MIRSYKS SF K +  SSYDLN+FFSDRKNKI+T TSKL   V        
Sbjct: 61  PSDRTQVEAMIRSYKSQSFCKQSAKSSYDLNQFFSDRKNKIVTETSKLREKVQKSKDTNS 120

Query: 121 ---VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQ----TED 180
              +D  SEHQL  L+  LDSKI VA+ MIEFMEADYD+LI+ A+ + +   Q     E 
Sbjct: 121 DHCLDSLSEHQLKALMATLDSKIGVADSMIEFMEADYDYLIEGAVEISSIDKQIFSPLET 180

Query: 181 EETTQFNISDLFNEPDEFEEYNVEGFQSLL 194
           E + + NIS+L  E +   +Y +EG   +L
Sbjct: 181 EASPELNISELGMEAN--YDYLIEGDTEIL 203

[Close]

BLAST of CSPI03G20310 vs. ExPASy TrEMBL
Match: A0A5D3DXK1 (Agamous-like MADS-box protein AGL3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00710 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 85/97 (87.63%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 70  MIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLMELLDALDSK 129
           MIRSYKSHSFTKPNSSYDLNRFFSDRKNKILT+TSKLLHNV DHQS++QL+ELL ALDSK
Sbjct: 1   MIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTHTSKLLHNVRDHQSKYQLVELLAALDSK 60

Query: 130 IRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEET 167
           I V N+MIEFMEADYD LIDQA+GMDT PSQTEDEET
Sbjct: 61  ISVGNNMIEFMEADYDDLIDQAVGMDTSPSQTEDEET 97

[Close]

BLAST of CSPI03G20310 vs. ExPASy TrEMBL
Match: A0A5A7U2J6 (Agamous-like MADS-box protein AGL3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00930 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = 0


Query: 136 MIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQ--------------------FNISDLF 195
           MIEFMEADYD LIDQA+GMDTPP QTEDEETTQ                    FNISD  
Sbjct: 1   MIEFMEADYDDLIDQAVGMDTPPFQTEDEETTQFKIFNFLNEPDEFEDEETIEFNISDFL 60

Query: 196 NEPDEFEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDF 215
           N+P+EFEEY+VEGFQSLL+D+FLETLVQNNPI + DFD+
Sbjct: 61  NDPNEFEEYDVEGFQSLLQDEFLETLVQNNPILNIDFDY 99

[Close]

BLAST of CSPI03G20310 vs. ExPASy TrEMBL
Match: A0A6J1J5U6 (agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-23
Identity = 89/229 (38.86%), Postives = 122/229 (53.28%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFI-----ASDCDP-- 60
           M RG LS  LI N KSR +TF +RK SL+KKAYELSTLCDV+TC+ I     A D DP  
Sbjct: 1   MVRGKLSFNLIRNRKSRCSTFKQRKNSLMKKAYELSTLCDVRTCVLINGPGFAPDEDPSL 60

Query: 61  -STHFETWPPNHHQIHQMIRSYKSHSFT-KPNSSYDLNRFFSDRKNKILTNTSKLLHNV- 120
            S  F TWP N  ++  MI +YK+ +   +    +DL+ +FSDRK K++T   K    V 
Sbjct: 61  SSVEFHTWPSNRSEVEHMIHAYKNGNCNLQKRKCFDLSDYFSDRKRKLVTEMCKHREKVG 120

Query: 121 ----------VDHQSEHQLMELLDALDSKIRVANDMIEFMEAD------------YDHLI 180
                     +D  SE QL E ++ LDS+I  A  MI+FM+AD            Y++++
Sbjct: 121 KIMWPDWDERLDCLSEQQLREFMNGLDSRIEAAGRMIDFMDADNENLFGMFSCEEYENVV 180

Query: 181 DQAIGMDTPPSQTEDEETTQFNISDLFNEPDEFE-EYNVEGFQSLLEDK 197
                  TP     + E+T  +++     PDE E   N E  + LLED+
Sbjct: 181 QMGGDSSTPVLSLVELESTD-SLNSPNPNPDEDEIGCNFENLEYLLEDE 228

[Close]

BLAST of CSPI03G20310 vs. NCBI nr
Match: XP_004145650.1 (agamous-like MADS-box protein AGL82 [Cucumis sativus])

HSP 1 Score: 435.3 bits (1118), Expect = 3.2e-118
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120

Query: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNISDLFNEPDE 180
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFN+SDLFNEPDE
Sbjct: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 180

Query: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 217
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 216

[Close]

BLAST of CSPI03G20310 vs. NCBI nr
Match: KAE8650565.1 (hypothetical protein Csa_011366 [Cucumis sativus])

HSP 1 Score: 435.3 bits (1118), Expect = 3.2e-118
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW
Sbjct: 35  MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 94

Query: 61  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 120
           PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM
Sbjct: 95  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQLM 154

Query: 121 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNISDLFNEPDE 180
           ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFN+SDLFNEPDE
Sbjct: 155 ELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNVSDLFNEPDE 214

Query: 181 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 217
           FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY
Sbjct: 215 FEEYNVEGFQSLLEDKFLETLVQNNPIPDFDFDFDY 250

[Close]

BLAST of CSPI03G20310 vs. NCBI nr
Match: XP_038877825.1 (agamous-like MADS-box protein MADS1 [Benincasa hispida])

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-76
Identity = 167/234 (71.37%), Postives = 183/234 (78.21%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG LSLKLIPN KSRRTTF+KRKKSL+KKAYELSTLCDVQTC+FIASDCDPSTHFETW
Sbjct: 1   MGRGTLSLKLIPNLKSRRTTFVKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTK---PNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQ--- 120
           PPNH QI+ MIRSYKS SF K    NSSY+L +FFSDRKNKILT+TSKL HNV DH    
Sbjct: 61  PPNHDQINAMIRSYKSRSFPKHSSRNSSYNLKQFFSDRKNKILTDTSKLRHNVEDHHLDS 120

Query: 121 -SEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQTEDEETTQFNISD 180
            SEHQL ELL  LDSKI VA+ MI+FM+ADYDHLI+QA GMDT PS+TE E TT+ +IS+
Sbjct: 121 LSEHQLKELLATLDSKIGVADGMIQFMDADYDHLIEQAFGMDTLPSETE-EPTTECDISE 180

Query: 181 LFNEPDEFE--------------EYNVEGFQSLLEDKFLETLVQNNPIPDFDFD 214
              EPDEFE              EYNVEGFQSLLED+FL TLV NNP   F FD
Sbjct: 181 FLIEPDEFEYNVEGFQSPLEDEFEYNVEGFQSLLEDEFLGTLVLNNP---FKFD 230

[Close]

BLAST of CSPI03G20310 vs. NCBI nr
Match: XP_038887166.1 (MADS-box protein SVP-like [Benincasa hispida])

HSP 1 Score: 232.3 bits (591), Expect = 4.1e-57
Identity = 133/203 (65.52%), Postives = 155/203 (76.35%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG L+LKLIPN KSRRTTF+KRKKSL+KKAYELSTLCDVQTC+FIASDCDPSTHFETW
Sbjct: 1   MGRGTLNLKLIPNLKSRRTTFVKRKKSLMKKAYELSTLCDVQTCVFIASDCDPSTHFETW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTK-PNSSYDLNRFFSDRKNKILTNTSKLLHNV-------VD 120
           PPNH QIH MIRSYKSHSF K   +SY+L++FFS R NKI T TSKL HNV       +D
Sbjct: 61  PPNHDQIHSMIRSYKSHSFPKLSRNSYNLHQFFSHRMNKIATETSKLRHNVDKFKDRHLD 120

Query: 121 HQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIG---MDTP---PSQTEDEET 180
             SEHQL ELL +LDSKI V + MI+FMEADYDHLI++  G   +DTP   PS+T  +ET
Sbjct: 121 SLSEHQLEELLASLDSKIGVVDGMIQFMEADYDHLIEEVSGFSSIDTPSFLPSET--KET 180

Query: 181 TQFNISDLFNEPDEFEEYNVEGF 190
            + +I++     +   EYNVE F
Sbjct: 181 PELDITEWLIGTNGL-EYNVEEF 200

[Close]

BLAST of CSPI03G20310 vs. NCBI nr
Match: XP_023526169.1 (agamous-like MADS-box protein AGL6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.0 bits (489), Expect = 2.7e-45
Identity = 116/191 (60.73%), Postives = 134/191 (70.16%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG LSLKLI NPKSRRTTF KRKKSL+KKAYELSTLCDVQTC+ IASD      F+TW
Sbjct: 1   MGRGTLSLKLISNPKSRRTTFQKRKKSLMKKAYELSTLCDVQTCVVIASD-----EFQTW 60

Query: 61  PPNHHQIHQMIRSYKSHSFTK--PNSSYDLNRFFSDRKNKILTNTSKLLHNV-------- 120
           P + +Q+  MIRSYKS SF K    SSYDLN+FFSDRKNKI+T TSKL   V        
Sbjct: 61  PSDRNQVEAMIRSYKSQSFCKHSAKSSYDLNQFFSDRKNKIVTETSKLRDKVQKSKDTNS 120

Query: 121 ---VDHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTPPSQT----ED 175
              +D  SEHQL  LL  LDSKI VA+ MIEFMEADYD+LI+ A+ + +   QT    E 
Sbjct: 121 DHCLDSLSEHQLKVLLATLDSKIGVADSMIEFMEADYDYLIEGAVEISSIDKQTLSPLET 180

[Close]

BLAST of CSPI03G20310 vs. TAIR 10
Match: AT5G58890.1 (AGAMOUS-like 82 )

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-10
Identity = 60/194 (30.93%), Postives = 93/194 (47.94%), Query Frame = 0


Query: 5   ILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPS----THFETW 64
           ++ L+ I N K+R TT+ KRK SL KKA E STLC V+TCL +      +    +  E W
Sbjct: 5   VVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIW 64

Query: 65  PPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSD--RKNKILT-------NTSKLLHNVV 124
           P +  ++  +IR YK    T      ++  F +D  + N+++T       N        +
Sbjct: 65  PKDETKVRAIIRKYKDTVSTSCRKETNVETFVNDVGKGNEVVTKKRVKRENKYSSWEEKL 124

Query: 125 DHQSEHQLMELLDALDSKIRVANDMIEFMEADYDHLIDQAIGMDTP-PSQTEDEETTQFN 184
           D  S  QL  +  A+DSK+   N+ +   E     +  QA  MDTP P    D+   QF 
Sbjct: 125 DKCSREQLHGIFCAVDSKL---NEAVTRQERSMFRVNHQA--MDTPFPQNLMDQ---QF- 184

[Close]

BLAST of CSPI03G20310 vs. TAIR 10
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-09
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 121 LMELLDALD 128
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]

BLAST of CSPI03G20310 vs. TAIR 10
Match: AT2G03710.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-09
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 121 LMELLDALD 128
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]

BLAST of CSPI03G20310 vs. TAIR 10
Match: AT2G03710.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-09
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHFETW 60
           MGRG + LK I N  +R+ TF KR+  L+KKAYELS LCD +  L I S+      F + 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PPNHHQIHQMIRSYKSHSFT--KPNSSYDLNRFFSDRKNKILTNTSKLLHNVVDHQSEHQ 120
           P     + + +  Y+ HS+    PN S    +   D+    L   S++   ++ H   H 
Sbjct: 61  PSG---MARTVDKYRKHSYATMDPNQS---AKDLQDKYQDYLKLKSRV--EILQHSQRHL 120

Query: 121 LMELLDALD 128
           L E L  +D
Sbjct: 121 LGEELSEMD 121

[Close]

BLAST of CSPI03G20310 vs. TAIR 10
Match: AT5G55690.1 (MADS-box transcription factor family protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-07
Identity = 38/143 (26.57%), Postives = 66/143 (46.15%), Query Frame = 0


Query: 1   MGRGILSLKLIPNPKSRRTTFLKRKKSLIKKAYELSTLCDVQTCLFIASDCDPSTHF--- 60
           MGR ++ +  I N K+R TT+ KRK  L KKA E STLC V TC+ +             
Sbjct: 1   MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVME 60

Query: 61  -ETWPPNHHQIHQMIRSYKSHSFTKPNSSYDLNRFFSDRKNKILTNTSKLLH----NVVD 120
            E WP +  ++ +++  Y+  + +    +Y +         K+   T    +      +D
Sbjct: 61  PELWPKDGSKVREILTKYRDTASSSCTKTYTVQECLEKNNTKVEKPTIATKYPTWDKKLD 120

Query: 121 HQSEHQLMELLDALDSKIRVAND 136
             S + L  +  A+++KI+ A +
Sbjct: 121 QCSLNDLYAVFMAVENKIQEATN 143

The following BLAST results are available for this feature:

BLAST of CSPI03G20310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIM0	7.3e-09	30.93	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=...	[more]
P29383	8.1e-08	34.11	Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana OX=3702 GN=AGL3 PE=1 ...	[more]
Q38694	1.8e-07	56.00	Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah OX=29714 PE=2 SV=1	[more]
F6I457	6.9e-07	27.71	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=...	[more]
A0A217EJJ0	6.9e-07	27.71	Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=3 SV=...	[more]

BLAST of CSPI03G20310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAL9	1.5e-118	99.54	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G258140 PE...	[more]
A0A6J1F370	3.9e-45	56.67	agamous-like MADS-box protein AGL6 OS=Cucurbita moschata OX=3662 GN=LOC111441717...	[more]
A0A5D3DXK1	1.3e-37	87.63	Agamous-like MADS-box protein AGL3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7U2J6	1.3e-24	65.66	Agamous-like MADS-box protein AGL3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1J5U6	4.2e-23	38.86	agamous-like MADS-box protein AGL14 OS=Cucurbita maxima OX=3661 GN=LOC111482037 ...	[more]

BLAST of CSPI03G20310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145650.1	3.2e-118	99.54	agamous-like MADS-box protein AGL82 [Cucumis sativus]	[more]
KAE8650565.1	3.2e-118	99.54	hypothetical protein Csa_011366 [Cucumis sativus]	[more]
XP_038877825.1	1.3e-76	71.37	agamous-like MADS-box protein MADS1 [Benincasa hispida]	[more]
XP_038887166.1	4.1e-57	65.52	MADS-box protein SVP-like [Benincasa hispida]	[more]
XP_023526169.1	2.7e-45	60.73	agamous-like MADS-box protein AGL6 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI03G20310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58890.1	5.2e-10	30.93	AGAMOUS-like 82	[more]
AT2G03710.1	5.8e-09	34.11	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.2	5.8e-09	34.11	K-box region and MADS-box transcription factor family protein	[more]
AT2G03710.3	5.8e-09	34.11	K-box region and MADS-box transcription factor family protein	[more]
AT5G55690.1	1.4e-07	26.57	MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 123..143
None	No IPR available	PANTHER	PTHR11945:SF176	AGAMOUS-LIKE MADS-BOX PROTEIN AGL82	coord: 3..169
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..169
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 38..59 score: 26.0 coord: 23..38 score: 64.75 coord: 3..23 score: 40.64
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..62 e-value: 5.1E-16 score: 69.2
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..50 e-value: 1.3E-15 score: 56.7
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..61 score: 18.193771
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 14..100 e-value: 6.7E-17 score: 63.4
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 1..81
IPR033897	MADS SRF-like	CDD	cd00266	MADS_SRF_like	coord: 2..68 e-value: 1.56874E-21 score: 82.6931

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20310.1	CSPI03G20310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0000987	cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding