Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAACAACTCCTATACACTTTTGGGAGAATATTTAGTAGCTAGCAAGATCAAAGGTTGAGAGAAATGATGAACAAGTTCAAGAAATCAGAAATTGTAGTGCTTTTAAGCCTCACAATTCTTCTAGTAATAACTCCTCTTCTTTCCTCATCCCTAAGACCAACTTATCTCTACTTCATCTTCAACCTCCTCATCATTGCCCTTGGAGTACAAGCTGGGCTTCTCAATGACCCTCCTCCCGATCATCAAGACAAGACCAACAAGCTTTCTCTAACTTCACCTGAAACCGTTGCTTCGTCCACGGAAACCTCCGCCCTCAAGAAGCATAGGGCTTTGGAGAAGGCTCACTCCGACAAGATTTCATCCGGCAATGTGAAAATGGAATCTCTTAAGAAGTGTCCCTCCGCTTCGAGTATTTTCTATATCGGAGAGGGCGATAGCGAGGCTGAGGAGACGACAGGGACGATCGAGGACGGGGAAGAGGAGGTCGTTGTCGGGGGCGGTGGAAATAATAATGGTCAAGAATTGTTTGCTCAAGCTGAGACGTTTATTGGGAACTTTTACAAGCAGTTGAAGATGCAGAAAGAAGAGTCTTGGAAAAACATTCATGGTTTCTATCAAAAACGCTTTTGAGGAAATGAATGAAAATTATATGAAAAATATATGAACACAAAGACACAAAAGAGAAAG
mRNA sequence
AGAACAACTCCTATACACTTTTGGGAGAATATTTAGTAGCTAGCAAGATCAAAGGTTGAGAGAAATGATGAACAAGTTCAAGAAATCAGAAATTGTAGTGCTTTTAAGCCTCACAATTCTTCTAGTAATAACTCCTCTTCTTTCCTCATCCCTAAGACCAACTTATCTCTACTTCATCTTCAACCTCCTCATCATTGCCCTTGGAGTACAAGCTGGGCTTCTCAATGACCCTCCTCCCGATCATCAAGACAAGACCAACAAGCTTTCTCTAACTTCACCTGAAACCGTTGCTTCGTCCACGGAAACCTCCGCCCTCAAGAAGCATAGGGCTTTGGAGAAGGCTCACTCCGACAAGATTTCATCCGGCAATGTGAAAATGGAATCTCTTAAGAAGTGTCCCTCCGCTTCGAGTATTTTCTATATCGGAGAGGGCGATAGCGAGGCTGAGGAGACGACAGGGACGATCGAGGACGGGGAAGAGGAGGTCGTTGTCGGGGGCGGTGGAAATAATAATGGTCAAGAATTGTTTGCTCAAGCTGAGACGTTTATTGGGAACTTTTACAAGCAGTTGAAGATGCAGAAAGAAGAGTCTTGGAAAAACATTCATGGTTTCTATCAAAAACGCTTTTGAGGAAATGAATGAAAATTATATGAAAAATATATGAACACAAAGACACAAAAGAGAAAG
Coding sequence (CDS)
ATGATGAACAAGTTCAAGAAATCAGAAATTGTAGTGCTTTTAAGCCTCACAATTCTTCTAGTAATAACTCCTCTTCTTTCCTCATCCCTAAGACCAACTTATCTCTACTTCATCTTCAACCTCCTCATCATTGCCCTTGGAGTACAAGCTGGGCTTCTCAATGACCCTCCTCCCGATCATCAAGACAAGACCAACAAGCTTTCTCTAACTTCACCTGAAACCGTTGCTTCGTCCACGGAAACCTCCGCCCTCAAGAAGCATAGGGCTTTGGAGAAGGCTCACTCCGACAAGATTTCATCCGGCAATGTGAAAATGGAATCTCTTAAGAAGTGTCCCTCCGCTTCGAGTATTTTCTATATCGGAGAGGGCGATAGCGAGGCTGAGGAGACGACAGGGACGATCGAGGACGGGGAAGAGGAGGTCGTTGTCGGGGGCGGTGGAAATAATAATGGTCAAGAATTGTTTGCTCAAGCTGAGACGTTTATTGGGAACTTTTACAAGCAGTTGAAGATGCAGAAAGAAGAGTCTTGGAAAAACATTCATGGTTTCTATCAAAAACGCTTTTGA
Protein sequence
MMNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIGEGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIHGFYQKRF*
Homology
BLAST of CSPI03G04930 vs. ExPASy TrEMBL
Match:
A0A0A0L509 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G074480 PE=4 SV=1)
HSP 1 Score: 355.1 bits (910), Expect = 1.8e-94
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query: 1 MMNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH 60
MMNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH
Sbjct: 1 MMNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH 60
Query: 61 QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 120
QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI
Sbjct: 61 QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 120
Query: 121 GEGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI 180
GEGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI
Sbjct: 121 GEGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI 180
Query: 181 HGFYQKRF 189
HGFYQKRF
Sbjct: 181 HGFYQKRF 188
BLAST of CSPI03G04930 vs. ExPASy TrEMBL
Match:
A0A5D3DK86 (Putative LIM and calponin domains-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00520 PE=4 SV=1)
HSP 1 Score: 334.3 bits (856), Expect = 3.2e-88
Identity = 182/188 (96.81%), Postives = 183/188 (97.34%), Query Frame = 0
Query: 1 MMNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH 60
MMNKFKKSEI+VLL LTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH
Sbjct: 1 MMNKFKKSEILVLLGLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH 60
Query: 61 QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 120
QDKTNKLSLTSPETVASSTETS LKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI
Sbjct: 61 QDKTNKLSLTSPETVASSTETSPLKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 120
Query: 121 GEGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI 180
GEGDSEAEETTG IED EEE VVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI
Sbjct: 121 GEGDSEAEETTG-IEDMEEE-VVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI 180
Query: 181 HGFYQKRF 189
HGFYQKRF
Sbjct: 181 HGFYQKRF 186
BLAST of CSPI03G04930 vs. ExPASy TrEMBL
Match:
A0A2H5QMS9 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_244680 PE=4 SV=1)
HSP 1 Score: 172.9 bits (437), Expect = 1.2e-39
Identity = 104/192 (54.17%), Postives = 133/192 (69.27%), Query Frame = 0
Query: 5 FKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLND----PPPDH 64
FKKS+I++L L LL+ITPLLSSSLRPTYLYF+FN+LIIALG +AGLL+ PP DH
Sbjct: 6 FKKSQILMLSLLASLLIITPLLSSSLRPTYLYFVFNILIIALGAEAGLLSSGPSKPPEDH 65
Query: 65 QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 124
++ + +S S +KK +A+EK+ S+KI SG VK+ LKKCPS S+F+I
Sbjct: 66 KNAQGASTDDEATKAGASPPNSEIKKVKAVEKSASEKI-SGAVKVNKLKKCPSTPSLFFI 125
Query: 125 GEGDSEAEETTGTIEDG----EEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEES 184
G G++E + + DG +EE VGG +GQELF +AE FIGNFYKQLKMQ+E+S
Sbjct: 126 GSGETETADDHQVLGDGLYEEKEEEEVGG---LSGQELFTKAEMFIGNFYKQLKMQREDS 185
Query: 185 WKNIHGFYQKRF 189
WK I GFYQK F
Sbjct: 186 WKRIDGFYQKAF 193
BLAST of CSPI03G04930 vs. ExPASy TrEMBL
Match:
A0A067F414 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029471mg PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 104/193 (53.89%), Postives = 132/193 (68.39%), Query Frame = 0
Query: 5 FKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLND----PPPDH 64
FKKS+I++L L LL+ITPLLSSSLRPTYLYF+FN+LIIALG +AGLL+ PP DH
Sbjct: 6 FKKSQILMLSLLASLLIITPLLSSSLRPTYLYFVFNILIIALGAEAGLLSSGPSKPPEDH 65
Query: 65 QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 124
++ + +S S +KK +A+EK+ S+KI SG VK+ LKKCPS S+F+I
Sbjct: 66 KNAQGASTDDEATKAGASPPNSEIKKVKAVEKSVSEKI-SGAVKVNKLKKCPSTPSLFFI 125
Query: 125 GEGDSEAEET-----TGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEE 184
G G++E + G E+ EEE V G +GQELF +AE FIGNFYKQLKMQ+E+
Sbjct: 126 GSGETETADDHQVFGDGLYEEKEEEEV----GGLSGQELFTKAEMFIGNFYKQLKMQRED 185
Query: 185 SWKNIHGFYQKRF 189
SWK I GFYQK F
Sbjct: 186 SWKRIDGFYQKAF 193
BLAST of CSPI03G04930 vs. ExPASy TrEMBL
Match:
V4UT10 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009585mg PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 104/193 (53.89%), Postives = 132/193 (68.39%), Query Frame = 0
Query: 5 FKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLND----PPPDH 64
FKKS+I++L L LL+ITPLLSSSLRPTYLYF+FN+LIIALG +AGLL+ PP DH
Sbjct: 6 FKKSQILMLSLLASLLIITPLLSSSLRPTYLYFVFNILIIALGAEAGLLSSGPSKPPEDH 65
Query: 65 QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 124
++ + +S S +KK +A+EK+ S+KI SG VK+ LKKCPS S+F+I
Sbjct: 66 KNAQGASTDDEATKAGASPPNSEIKKVKAVEKSVSEKI-SGAVKVNKLKKCPSTPSLFFI 125
Query: 125 GEGDSEAEET-----TGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEE 184
G G++E + G E+ EEE V G +GQELF +AE FIGNFYKQLKMQ+E+
Sbjct: 126 GSGETETADDHQVFGDGLYEEKEEEEV----GGLSGQELFTKAEMFIGNFYKQLKMQRED 185
Query: 185 SWKNIHGFYQKRF 189
SWK I GFYQK F
Sbjct: 186 SWKRIDGFYQKAF 193
BLAST of CSPI03G04930 vs. NCBI nr
Match:
KGN56109.1 (hypothetical protein Csa_011766 [Cucumis sativus])
HSP 1 Score: 355.1 bits (910), Expect = 3.6e-94
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query: 1 MMNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH 60
MMNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH
Sbjct: 1 MMNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH 60
Query: 61 QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 120
QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI
Sbjct: 61 QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 120
Query: 121 GEGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI 180
GEGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI
Sbjct: 121 GEGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI 180
Query: 181 HGFYQKRF 189
HGFYQKRF
Sbjct: 181 HGFYQKRF 188
BLAST of CSPI03G04930 vs. NCBI nr
Match:
KAA0055857.1 (putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa] >TYK24081.1 putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa])
HSP 1 Score: 334.3 bits (856), Expect = 6.6e-88
Identity = 182/188 (96.81%), Postives = 183/188 (97.34%), Query Frame = 0
Query: 1 MMNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH 60
MMNKFKKSEI+VLL LTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH
Sbjct: 1 MMNKFKKSEILVLLGLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDH 60
Query: 61 QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 120
QDKTNKLSLTSPETVASSTETS LKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI
Sbjct: 61 QDKTNKLSLTSPETVASSTETSPLKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 120
Query: 121 GEGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI 180
GEGDSEAEETTG IED EEE VVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI
Sbjct: 121 GEGDSEAEETTG-IEDMEEE-VVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNI 180
Query: 181 HGFYQKRF 189
HGFYQKRF
Sbjct: 181 HGFYQKRF 186
BLAST of CSPI03G04930 vs. NCBI nr
Match:
KAG6577458.1 (hypothetical protein SDJN03_25032, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 182.6 bits (462), Expect = 3.2e-42
Identity = 107/187 (57.22%), Postives = 132/187 (70.59%), Query Frame = 0
Query: 2 MNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQ 61
M++ K+SE+V++L LT+LL+ITPLLSSSLRPTYLYF+FNLLI+ GLL+ P++
Sbjct: 1 MSRLKRSEVVLVLCLTLLLLITPLLSSSLRPTYLYFVFNLLIL------GLLSSAFPNNA 60
Query: 62 DKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYIG 121
N + SP T A++ HRALEKAHSD I N K+ESL KCPSAS+IF+IG
Sbjct: 61 HSPN--TTPSPHTSANN--------HRALEKAHSDNIPPPNPKIESLNKCPSASTIFFIG 120
Query: 122 EGDSEAEETTGTIEDGEEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEESWKNIH 181
+GDSE EE GG NGQ+LFAQAETFIGNFYKQL+MQK+ESWKN+H
Sbjct: 121 DGDSEE----------AEEEASGGAAGGNGQDLFAQAETFIGNFYKQLEMQKQESWKNVH 161
Query: 182 GFYQKRF 189
GFY+K F
Sbjct: 181 GFYRKPF 161
BLAST of CSPI03G04930 vs. NCBI nr
Match:
GAY65911.1 (hypothetical protein CUMW_244680 [Citrus unshiu])
HSP 1 Score: 172.9 bits (437), Expect = 2.6e-39
Identity = 104/192 (54.17%), Postives = 133/192 (69.27%), Query Frame = 0
Query: 5 FKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLND----PPPDH 64
FKKS+I++L L LL+ITPLLSSSLRPTYLYF+FN+LIIALG +AGLL+ PP DH
Sbjct: 6 FKKSQILMLSLLASLLIITPLLSSSLRPTYLYFVFNILIIALGAEAGLLSSGPSKPPEDH 65
Query: 65 QDKTNKLSLTSPETVASSTETSALKKHRALEKAHSDKISSGNVKMESLKKCPSASSIFYI 124
++ + +S S +KK +A+EK+ S+KI SG VK+ LKKCPS S+F+I
Sbjct: 66 KNAQGASTDDEATKAGASPPNSEIKKVKAVEKSASEKI-SGAVKVNKLKKCPSTPSLFFI 125
Query: 125 GEGDSEAEETTGTIEDG----EEEVVVGGGGNNNGQELFAQAETFIGNFYKQLKMQKEES 184
G G++E + + DG +EE VGG +GQELF +AE FIGNFYKQLKMQ+E+S
Sbjct: 126 GSGETETADDHQVLGDGLYEEKEEEEVGG---LSGQELFTKAEMFIGNFYKQLKMQREDS 185
Query: 185 WKNIHGFYQKRF 189
WK I GFYQK F
Sbjct: 186 WKRIDGFYQKAF 193
BLAST of CSPI03G04930 vs. NCBI nr
Match:
KAF3962703.1 (hypothetical protein CMV_012814 [Castanea mollissima])
HSP 1 Score: 172.2 bits (435), Expect = 4.4e-39
Identity = 109/214 (50.93%), Postives = 138/214 (64.49%), Query Frame = 0
Query: 2 MNKFKKSEIVVLLSLTILLVITPLLSSSLRPTYLYFIFNLLIIALGVQAGLLNDPPPDHQ 61
MNKFKKS++V+L L +LL+ITPLLSSSLRP YLYFI N+LIIALG +AGLL+ +
Sbjct: 1 MNKFKKSQVVMLFLLAVLLIITPLLSSSLRPAYLYFIINILIIALGAEAGLLSSFSKPFE 60
Query: 62 DKTNKLSLTSPETVASS-----------------TETSALKKHRALEKAHSDKISSGNVK 121
DK + L +P+ +ASS S KK + +EK+ S+KI G+VK
Sbjct: 61 DKKQTV-LAAPKPLASSEVSPDNGVVRTTNDKVVAPASTEKKAKVVEKSASEKI-VGSVK 120
Query: 122 MESLKKCPSASSIFYIGEGDSEA----------EETTGTIEDGEEEVVVGGGGNNNGQEL 181
++ + KCPS S+F+IG G+SEA EE G +DGEEEV +GQEL
Sbjct: 121 IDKVTKCPSMPSLFFIGGGESEAEDVAEEAYAEEEVKGEEKDGEEEV--------SGQEL 180
Query: 182 FAQAETFIGNFYKQLKMQKEESWKNIHGFYQKRF 189
F +AETFIGNFYKQLKMQ+E+SWK IH FYQK F
Sbjct: 181 FTKAETFIGNFYKQLKMQREDSWKRIHEFYQKAF 204
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L509 | 1.8e-94 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G074480 PE=4 SV=1 | [more] |
A0A5D3DK86 | 3.2e-88 | 96.81 | Putative LIM and calponin domains-containing protein 1 OS=Cucumis melo var. maku... | [more] |
A0A2H5QMS9 | 1.2e-39 | 54.17 | Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_244680 PE=4 SV=1 | [more] |
A0A067F414 | 2.1e-39 | 53.89 | Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029471mg PE=4 SV=1 | [more] |
V4UT10 | 2.1e-39 | 53.89 | Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009585mg PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |
KGN56109.1 | 3.6e-94 | 100.00 | hypothetical protein Csa_011766 [Cucumis sativus] | [more] |
KAA0055857.1 | 6.6e-88 | 96.81 | putative LIM and calponin domains-containing protein 1 [Cucumis melo var. makuwa... | [more] |
KAG6577458.1 | 3.2e-42 | 57.22 | hypothetical protein SDJN03_25032, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
GAY65911.1 | 2.6e-39 | 54.17 | hypothetical protein CUMW_244680 [Citrus unshiu] | [more] |
KAF3962703.1 | 4.4e-39 | 50.93 | hypothetical protein CMV_012814 [Castanea mollissima] | [more] |
Match Name | E-value | Identity | Description | |