CSPI02G25550 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G25550
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Protein of unknown function (DUF 3339)
Location	Chr2: 21709890 .. 21710643 (-)
RNA-Seq Expression	CSPI02G25550
Synteny	CSPI02G25550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCCACTTATGAAAAAACAAAAAAAGAAAACATGTGAATCTGAATAACTTCATTCACTAAGCTTCAACTTTCCAAGTCATCCCTCCACCATAATTTTGTCCTTTTCTTCACCGCTATTAACACCTTAGCTTCCATTGCTTTTGATATGTTCCTGATCGTCTCTCTGTTGGTTTGTTGTTGAGAGGGAGAGGTACTATCGAGAAAGATCAATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTTCTGCTAACTCCGGGCTTGTTGGTTCAGATGCCTGGGAAGAGTCGGTTCGTTGAATTTGGGAATTTTCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTATATGGGCTCCTAATTTCACATCTTTCTCTCTATTTTTTTTCTTTCTTTCCCTTAAATCTGATTGTCTTTTGTCTTTAAACTTGTTTTGTATCCATTTTTTTTCTCAATCTCCTTTGATTTGTTAATAAGTATGTGTGGGTTTGTCATCTTTGAAGATGAGGAATTGGTATATAGCATCATTCTCTTAACTTTCTCTTCTATGTTTTTGAGGAATTTGATTCTTCAAATCTATCAATCCCATCCCATCACATCACATGTGCAAACATATATTTCGTCATGACAAAAAAAACTTTTTATCAATATTTTCAAAATATTTACGAATACGATAAAATTGATACACTATT

mRNA sequence

ACCCCACTTATGAAAAAACAAAAAAAGAAAACATGTGAATCTGAATAACTTCATTCACTAAGCTTCAACTTTCCAAGTCATCCCTCCACCATAATTTTGTCCTTTTCTTCACCGCTATTAACACCTTAGCTTCCATTGCTTTTGATATGTTCCTGATCGTCTCTCTGTTGGTTTGTTGTTGAGAGGGAGAGGTACTATCGAGAAAGATCAATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTTCTGCTAACTCCGGGCTTGTTGGTTCAGATGCCTGGGAAGAGTCGGTTCGTTGAATTTGGGAATTTTCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTATATGGGCTCCTAATTTCACATCTTTCTCTCTATTTTTTTTCTTTCTTTCCCTTAAATCTGATTGTCTTTTGTCTTTAAACTTGTTTTGTATCCATTTTTTTTCTCAATCTCCTTTGATTTGTTAATAAGTATGTGTGGGTTTGTCATCTTTGAAGATGAGGAATTGGTATATAGCATCATTCTCTTAACTTTCTCTTCTATGTTTTTGAGGAATTTGATTCTTCAAATCTATCAATCCCATCCCATCACATCACATGTGCAAACATATATTTCGTCATGACAAAAAAAACTTTTTATCAATATTTTCAAAATATTTACGAATACGATAAAATTGATACACTATT

Coding sequence (CDS)

ATGGCGGATTGGGGTCCGGTTTTTGTAGCGGTGATGTTGTTCGTTCTGCTAACTCCGGGCTTGTTGGTTCAGATGCCTGGGAAGAGTCGGTTCGTTGAATTTGGGAATTTTCAGACGAGTGGAGTCTCCATTTTGGTTCATTCAATTCTCTATTTTGCATTGATCTGTATCTTCTTGTTGGCTGTTCGTGTTCATGTTTATATGGGCTCCTAA

Protein sequence

MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLLAVRVHVYMGS*

Homology

[Close]

BLAST of CSPI02G25550 vs. ExPASy TrEMBL
Match: A0A5D3BUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00130 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.7e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AVRVHVYMGS
Sbjct: 61 AVRVHVYMGS 70

[Close]

BLAST of CSPI02G25550 vs. ExPASy TrEMBL
Match: A0A6J1BYE9 (uncharacterized protein LOC111006599 OS=Momordica charantia OX=3673 GN=LOC111006599 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.8e-28
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAV+LFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CSPI02G25550 vs. ExPASy TrEMBL
Match: A0A6J1K207 (uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAV+LFVLLTPGLLVQMPGK+RF+EFGNFQTSGVSILVHS LYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CSPI02G25550 vs. ExPASy TrEMBL
Match: A0A6J1FLS0 (uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC111445120 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAV+LFVLLTPGLLVQMPGK+RF+EFGNFQTSGVSILVHS LYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CSPI02G25550 vs. ExPASy TrEMBL
Match: A0A540KW79 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_035956 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.7e-27
Identity = 61/70 (87.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPVF+AV+LFVLLTPGLL+QMPGKSRFVEFGNFQTSGVSILVHSI+YFALICIFLL
Sbjct: 1  MSDWGPVFIAVLLFVLLTPGLLIQMPGKSRFVEFGNFQTSGVSILVHSIIYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          A+ VH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]

BLAST of CSPI02G25550 vs. NCBI nr
Match: KAA0056547.1 (uncharacterized protein E6C27_scaffold288G00490 [Cucumis melo var. makuwa] >TYK02715.1 uncharacterized protein E5676_scaffold1154G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 2.0e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AVRVHVYMGS
Sbjct: 61 AVRVHVYMGS 70

[Close]

BLAST of CSPI02G25550 vs. NCBI nr
Match: XP_022134304.1 (uncharacterized protein LOC111006599 [Momordica charantia])

HSP 1 Score: 134.4 bits (337), Expect = 3.8e-28
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAV+LFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CSPI02G25550 vs. NCBI nr
Match: XP_011649954.2 (uncharacterized protein LOC101211888 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 4.9e-28
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL
Sbjct: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVRVHVYMG 70
          AVRVHVY G
Sbjct: 61 AVRVHVYNG 69

[Close]

BLAST of CSPI02G25550 vs. NCBI nr
Match: XP_023551540.1 (uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 4.2e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAV+LFVLLTPGLLVQMPGK+RF+EFGNFQTSGVSILVHS LYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CSPI02G25550 vs. NCBI nr
Match: XP_022993368.1 (uncharacterized protein LOC111489412 [Cucurbita maxima])

HSP 1 Score: 131.0 bits (328), Expect = 4.2e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPVFVAV+LFVLLTPGLLVQMPGK+RF+EFGNFQTSGVSILVHS LYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61 AVRVHVYMGS 71
          AV VHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CSPI02G25550 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 110.5 bits (275), Expect = 5.5e-25
Identity = 46/69 (66.67%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M+DWGPV V V+LFV+LTPGLL Q+PG+ ++VEFGNFQTS VS++VHS+LYF+L+C+FLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AVRVHVYMG 70
          A+++H+Y+G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of CSPI02G25550 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-22
Identity = 45/66 (68.18%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          M DWGPVFVAV LFVLLTPGLL+Q+PG+ R VEFG FQTSG+S++VH+++YF L+CI LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AVRVHV 67
          A+++H+
Sbjct: 61 ALQIHI 66

[Close]

BLAST of CSPI02G25550 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 102.4 bits (254), Expect = 1.5e-22
Identity = 48/70 (68.57%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPV VAV+LFVLLTPGLL Q+P + R VEFGN QTSG SILVH+I++F LI IF +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AVRVHVYMGS 71
          A+R+H+Y G+
Sbjct: 61 AIRLHIYTGT 70

[Close]

BLAST of CSPI02G25550 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 96.7 bits (239), Expect = 8.2e-21
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60
          MADWGPV +AV+LFV+L+PGLL Q+P   R VEFGN QTSG SILVH+I++F LI IF +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AVRVHVYMG 70
          A+ VH+Y G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of CSPI02G25550 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-19
Identity = 38/66 (57.58%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 2  ADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLLA 61
          ADWGPV VAV LF+LL+PGLL Q+P ++R +EFGN  TSG+SILVH+I+YF ++ I ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 VRVHVY 68
          +++H++
Sbjct: 63 IQIHIH 68

The following BLAST results are available for this feature:

BLAST of CSPI02G25550 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G25550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BUE1	9.7e-30	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1BYE9	1.8e-28	97.14	uncharacterized protein LOC111006599 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1K207	2.0e-27	92.86	uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412...	[more]
A0A6J1FLS0	2.0e-27	92.86	uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A540KW79	7.7e-27	87.14	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_035956 PE=4 SV=1	[more]

BLAST of CSPI02G25550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056547.1	2.0e-29	100.00	uncharacterized protein E6C27_scaffold288G00490 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_022134304.1	3.8e-28	97.14	uncharacterized protein LOC111006599 [Momordica charantia]	[more]
XP_011649954.2	4.9e-28	98.55	uncharacterized protein LOC101211888 [Cucumis sativus]	[more]
XP_023551540.1	4.2e-27	92.86	uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo]	[more]
XP_022993368.1	4.2e-27	92.86	uncharacterized protein LOC111489412 [Cucurbita maxima]	[more]

BLAST of CSPI02G25550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08391.1	5.5e-25	66.67	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	1.1e-22	68.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G48660.1	1.5e-22	68.57	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	8.2e-21	65.22	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	7.6e-19	57.58	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 1.6E-35 score: 121.1
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF71	BNAC07G48990D PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G25550.1	CSPI02G25550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane