CSPI02G24470 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGTGAAATATTTTCTTCAAGTTCAATTTTGTAGTATTCGATGATTTAGAAGTGCACACAATCCAATCAATTATTTATTCTTAAACTTGCCTCAATGTGCTAATACTACTTAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTACTGAGTTTATTGGTCAAAGCTCAGGTTTGCAATTTCATTTTTCTTCATTTTTGGTTATTATTTAGTTAATGATATAGTATCTTTTGGGATAATCTTGTTTTTTTTTTAAAAAAAACTGAGACAAACCTCTTTATTAATGATAATAAATGAGATTTAGGCTCAAAATACAAGAGTATTATACTAAGAGCAAGAGAACTAGGGGAGAATACAGTCAAAGACTAAAACAGAAGCTAAACTTGGGCAACAAAAAATGGCAATCCAAAGGAAATCAGTATTCTTTTGAGAACTTATGTACACCAGTTAATTACTAGTTTAGCCGTGAACTTTCAAAATTGTGTTTTTATAGTTTATGAAACTCGTTGATAAAAGTTACAAAACATTGAAAGTTTAGAGGCTTATGATCTCTTTTCAAATTCTGGGACCTCTCTTTAGACAACCCTAAAACTTGAACCGTCACTCTTGTAATTTGACCCTTCATTAAATTTATCATACCAACCAAATTAAACTTTTGGGTTGATTGGTTAGTTAACAATATTGGATACGTTTTTCTTTATGTACATAAGCACATATGAGATGATTATATTGTAGAGCTTCTTCTTTGGCCTATTTAATTTTATCTGGATAGTCCTATTGTTGAAAAGCTAATGAGAAAAGTTTGTCAATCCGAATTGGGCTTAAATATATCTAAATTGCTCCAGTTATGTATGGTTTGGTATTTATAGAGCTTGGACTTAATGCTTAAATTACACATTTTATTGATGAAATGAAAAGAGACTAATGTTTGAATTACAAAGAAGCTAGAAATCACAAGAACTAGGGATCAGCATGCTTAAATATATCTAGCTTGGACTTCTTCTATTTGTTTGGAAATATTTTTGACGTTGGACAAGCTACTTAGTCTGAGTATTGCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGGTAGGCAATCCGGGTTTGTGGTTACTATCCCTATTAACTACCTGCACTGAATTTATACTTTTCAACAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCACATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGGAAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTACTGAGTTTATTGGTCAAAGCTCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCACATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGGAAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTACTGAGTTTATTGGTCAAAGCTCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCACATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGGAAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILEHSIINQSH Homology
BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot
Match: I3XHK1 (DEAD-box ATP-dependent RNA helicase FANCM OS=Arabidopsis thaliana OX=3702 GN=FANCM PE=2 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 3.5e-51 Identity = 101/119 (84.87%), Postives = 113/119 (94.96%), Query Frame = 0
BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot
Match: A0A1D5PRR9 (Fanconi anemia group M protein OS=Gallus gallus OX=9031 GN=FANCM PE=1 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 4.3e-33 Identity = 70/126 (55.56%), Postives = 93/126 (73.81%), Query Frame = 0
BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot
Match: Q8IYD8 (Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2) HSP 1 Score: 142.1 bits (357), Expect = 4.3e-33 Identity = 71/130 (54.62%), Postives = 96/130 (73.85%), Query Frame = 0
BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot
Match: Q8BGE5 (Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3) HSP 1 Score: 136.7 bits (343), Expect = 1.8e-31 Identity = 69/130 (53.08%), Postives = 91/130 (70.00%), Query Frame = 0
BLAST of CSPI02G24470 vs. ExPASy Swiss-Prot
Match: A2Q8R2 (ATP-dependent DNA helicase mph1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=mph1 PE=3 SV=2) HSP 1 Score: 131.3 bits (329), Expect = 7.6e-30 Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 0
BLAST of CSPI02G24470 vs. ExPASy TrEMBL
Match: A0A0A0LQJ7 (Helicase C-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G393190 PE=3 SV=1) HSP 1 Score: 229.2 bits (583), Expect = 9.9e-57 Identity = 117/119 (98.32%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of CSPI02G24470 vs. ExPASy TrEMBL
Match: A0A1S3B3H7 (Fanconi anemia group M protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56 Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of CSPI02G24470 vs. ExPASy TrEMBL
Match: A0A1S4DTZ2 (Fanconi anemia group M protein isoform X5 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56 Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of CSPI02G24470 vs. ExPASy TrEMBL
Match: A0A1S4DUR1 (Fanconi anemia group M protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56 Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of CSPI02G24470 vs. ExPASy TrEMBL
Match: A0A1S3B2A7 (Fanconi anemia group M protein isoform X4 OS=Cucumis melo OX=3656 GN=LOC103485372 PE=3 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 2.9e-56 Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of CSPI02G24470 vs. NCBI nr
Match: XP_008441145.1 (PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo]) HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56 Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of CSPI02G24470 vs. NCBI nr
Match: XP_016899456.1 (PREDICTED: Fanconi anemia group M protein isoform X5 [Cucumis melo]) HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56 Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of CSPI02G24470 vs. NCBI nr
Match: XP_011649875.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Cucumis sativus]) HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56 Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of CSPI02G24470 vs. NCBI nr
Match: KAE8652234.1 (hypothetical protein Csa_022145 [Cucumis sativus]) HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56 Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of CSPI02G24470 vs. NCBI nr
Match: XP_031736812.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Cucumis sativus]) HSP 1 Score: 227.6 bits (579), Expect = 5.9e-56 Identity = 116/119 (97.48%), Postives = 118/119 (99.16%), Query Frame = 0
BLAST of CSPI02G24470 vs. TAIR 10
Match: AT1G35530.1 (DEAD/DEAH box RNA helicase family protein ) HSP 1 Score: 200.3 bits (508), Expect = 9.4e-52 Identity = 99/116 (85.34%), Postives = 111/116 (95.69%), Query Frame = 0
BLAST of CSPI02G24470 vs. TAIR 10
Match: AT1G35530.2 (DEAD/DEAH box RNA helicase family protein ) HSP 1 Score: 199.1 bits (505), Expect = 2.1e-51 Identity = 99/115 (86.09%), Postives = 110/115 (95.65%), Query Frame = 0
BLAST of CSPI02G24470 vs. TAIR 10
Match: AT3G03300.1 (dicer-like 2 ) HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07 Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0
BLAST of CSPI02G24470 vs. TAIR 10
Match: AT3G03300.2 (dicer-like 2 ) HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07 Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0
BLAST of CSPI02G24470 vs. TAIR 10
Match: AT3G03300.3 (dicer-like 2 ) HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07 Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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