CSPI02G17720 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G17720
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein Iojap-related, mitochondrial
Location	Chr2: 16604527 .. 16607655 (-)
RNA-Seq Expression	CSPI02G17720
Synteny	CSPI02G17720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGTTTAAAAAAACCTAAAACTTAACTATTCTCATCCAATTCCCCAAATTAAAAACCAAAGCAATTGAAAATAGCCCAAAGCGTTGGGCTGATCCACAGACCAAGCAATCAGCTCGTCGCGCCAACCGGGAATTTCAAGCTCCAATCGGGAACTCTATTTTTCACGGCGGCCTATTGGGATACACCGCACCGGAGAGATCACATGTTGGCGGCGCAAAGAATTCGATCTTCATCTGCTTTCTCTTCCACGATTCGTTTTCTTCAACTATGGAATAGAGGCGTCTTTGTTCACGGCCATGCTCTATCTTCTTCCACCGCTGGCTCTCCCGATAAAAGCTTACTTGATCTTAAGGAGGTCGAGACGATTCTGAATAAGGTGAAGGCGGACGATGTCAAAGTGATACCAGTCCGTAAAGACTGTGATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCTACCTGGCATGTTAAGAACATCGCTCAAGCCCTAATTTACCAGGTAAGTTTCTTCTTCTGCATTTCTTTCTGATTTTATTGTTCCGACGTTTCAATTATATTTCCGAGAAAATGAATTTGAAGAAGAGATGTTGCTGATTAGTGTGGCTTAATTTTTTATCTCGTTTTATTTGAATCTACAGATAAAGCAAAAGCAGAAAGGTGCTAGACAGTTAGTACTTCCTAGTGTGGAAGGGCAAGAGGAAGGAAAATGGATTGTCATCGACTCTGGTCCGTGTTACTCTCTTTAACGAGTATTCTGCACGTTCTTGTTCTTGGACTCTGTAGGAATTTGTATTGCAGATAAACCAATCGTCTCTATTTTCTAGGATACCCATAAACGAAATATTACGAACTAATTCGATTCCACATGCTTTGAATTGTCAATTCTTCTGCACCGTAACACTCTGCACGCGACCTAGCAAGCTGCAACAGAGTTTATACTATGATTGATGCATTCTGCTACGTATAAAATTAGTTATTGTTCGTCAAATTAATCATCCCTCCTTAGGATTTTCTAGAAATGATGATGAAAATGAAAATTATTGTACTATTGGATTAACAAAGATTGTATCATAGTGTTGTTTTAAGATTTATTCATCTATATATTTGCTATGTCCTATGAAAGTTTATAATGTATACATTCTTATTGTTTCCGGCCAATGCTTTTACAGTTTATCTTTTAGCAGCCAACATGATTTACTCCTTCTCTTGAAGCCAGGGGTTATATTATACCCACAACCTGAATTTGTTGTACTAAAAGAACAATTTGTTTTTTTACGTTTTCTTACGTTTTCTTTTAGGTAAAGTAGTAGTTCACGCCCTCGACGAGAATGCCAGGAGTTATTACAATCTGGAGAGCCTTTGGTCCACTGAGACACCACCAGATGATTCAGCTCAGGTGAATTCTTGTTGCTTTTCTCTTTTGCCCTTTATTAATACAAAGGGGAAGAACATACTTGGGCATGACTTTTTTTGCACTTCTTTTCAACCTTCTTCTGTTTAAATGTTTAAACCAGAGGTACACGATTTACGCTTTCTCGTGGCACCTTCGCATTTTAAGGCTCAGATAGTTGGTTGAAACGGTAGGTAGGTAGGCGTAGGCTAACTTAGATGTGATAAATTTTCACTGCTAATTTCCCTCTAGAGGCACAGACAAGATTGTGGTCAGTAAAATCACACTTGAGATACGTTTGTGATGAAATGTTAAATCACGCTTGAATGTGAAAAGTTTCAAAATAGTTAATTTTTCATAAAAATATTTCGAAGTTTACAATATTAATATAGAAACCCAAATATTGATTTATAAGACCTTTTGTTGAAAAATGAATTTAAAAGTAGTCTTACCCGTTGAGGAATGGTTAGAATTGGTGAGCATTGATGCTCTTTTGCATATATTGTTATTATGGAGTGAAATGTTGACCTAATCCGTTATTCCTCTCTCCTCTCCAGTTGAAGAGGTCTTTTGTAATCACCACAATTTACACGGGTTTCCCTTTTGTAATTTCATTCCATCAATGAAGTTGTTTGTGATTGGAAAAGAAATGTTGACCTAGTCTAGAGCAACGAACTTGGTGAAGTAGACCATTTTCTTCTTTTTCCCAGCATTTTGGATGGTCTTGGCTGGATTTCCTTTTTTTAGTTTCTGAACCCCTGCTATGGCTTGGGGTTTAATCAAAGGTTGGAATTGTGAAAGGGGGCTCAAGGTATCAGTTATACATACAGACAGTCAGACTTATAGGGATCTACAAACACTCACGATATTTAGCACTGTGTTAAGTAAAGACTACAGCCATACTCTCACGAATGAATTCTGTGTTGTTCCTTTAAACATGTGAAATTTCTCCAACATTCATAGGGATAAAGAGGTTAATGTTGGGGGATCCTTCATTCCATCCATTTCTAGAAGTTTTGCCAGGCATGTTTGGGGATGGAGAGTGATGTGGTATTGAAATCACTTTGAAACAGACCTTAATTATCCAAAATCAATTTTAATAATATGAAAATCATGTCTCAAAGATTGGTTATGAATGACTAGAGGCTTGTTAGAGAGTGTTTTTGAATGTGACAAATGATTGTAATCATACGCGGTACTCCTACCCAAGCTGGTTATGAATGACTAGAGGCTTGTTAGAGAGTGTTCTTGAATGTGACAAATGATTGTAATCATACGCGGTACTCCTACCCAAGCTATCACTCTACAATTAGTTTCTGGGAGACCATGATCAGAGATATTGTACCCATTTCTATCATCATATTGCAATAAACTGCTGCTATGCTTTTATATTGAAAAAATTCTTTACTGAATCGGAATGAACTGAACCAAATAAGAGTATGACCTAACTCCCTTGGTCTTAACCAATGTCTTATTCTGTTCTTTGTGCAGGATCTGGACAGAGCTTTAGTGAAGATACGGCCGAAGAACAACTCCAAGAAGAAACCAACACAAAAAACTCCTTAACAACTGAAAATTCTCTCTTCAATGATCATCTCATTGTCCCGTTTTTTCATAATGTAGACTTGAGAGTGTAAGAAAGAAAGAAGGAACGATGCAGATGCTTCACTGTTTTCTGGGAATTATCCATTTTCATCTTCATCCATGAAATTATGTGAGCTTATTTACTCTCTCT

mRNA sequence

TTTGTTTAAAAAAACCTAAAACTTAACTATTCTCATCCAATTCCCCAAATTAAAAACCAAAGCAATTGAAAATAGCCCAAAGCGTTGGGCTGATCCACAGACCAAGCAATCAGCTCGTCGCGCCAACCGGGAATTTCAAGCTCCAATCGGGAACTCTATTTTTCACGGCGGCCTATTGGGATACACCGCACCGGAGAGATCACATGTTGGCGGCGCAAAGAATTCGATCTTCATCTGCTTTCTCTTCCACGATTCGTTTTCTTCAACTATGGAATAGAGGCGTCTTTGTTCACGGCCATGCTCTATCTTCTTCCACCGCTGGCTCTCCCGATAAAAGCTTACTTGATCTTAAGGAGGTCGAGACGATTCTGAATAAGGTGAAGGCGGACGATGTCAAAGTGATACCAGTCCGTAAAGACTGTGATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCTACCTGGCATGTTAAGAACATCGCTCAAGCCCTAATTTACCAGATAAAGCAAAAGCAGAAAGGTGCTAGACAGTTAGTACTTCCTAGTGTGGAAGGGCAAGAGGAAGGAAAATGGATTGTCATCGACTCTGGTAAAGTAGTAGTTCACGCCCTCGACGAGAATGCCAGGAGTTATTACAATCTGGAGAGCCTTTGGTCCACTGAGACACCACCAGATGATTCAGCTCAGGATCTGGACAGAGCTTTAGTGAAGATACGGCCGAAGAACAACTCCAAGAAGAAACCAACACAAAAAACTCCTTAACAACTGAAAATTCTCTCTTCAATGATCATCTCATTGTCCCGTTTTTTCATAATGTAGACTTGAGAGTGTAAGAAAGAAAGAAGGAACGATGCAGATGCTTCACTGTTTTCTGGGAATTATCCATTTTCATCTTCATCCATGAAATTATGTGAGCTTATTTACTCTCTCT

Coding sequence (CDS)

ATGTTGGCGGCGCAAAGAATTCGATCTTCATCTGCTTTCTCTTCCACGATTCGTTTTCTTCAACTATGGAATAGAGGCGTCTTTGTTCACGGCCATGCTCTATCTTCTTCCACCGCTGGCTCTCCCGATAAAAGCTTACTTGATCTTAAGGAGGTCGAGACGATTCTGAATAAGGTGAAGGCGGACGATGTCAAAGTGATACCAGTCCGTAAAGACTGTGATTGGGCTGATTACATGGTGTTCGCCACTGGTAGGTCTACCTGGCATGTTAAGAACATCGCTCAAGCCCTAATTTACCAGATAAAGCAAAAGCAGAAAGGTGCTAGACAGTTAGTACTTCCTAGTGTGGAAGGGCAAGAGGAAGGAAAATGGATTGTCATCGACTCTGGTAAAGTAGTAGTTCACGCCCTCGACGAGAATGCCAGGAGTTATTACAATCTGGAGAGCCTTTGGTCCACTGAGACACCACCAGATGATTCAGCTCAGGATCTGGACAGAGCTTTAGTGAAGATACGGCCGAAGAACAACTCCAAGAAGAAACCAACACAAAAAACTCCTTAA

Protein sequence

MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKKPTQKTP*

Homology

[Close]

BLAST of CSPI02G17720 vs. ExPASy Swiss-Prot
Match: Q9CAF9 (Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g67620 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.7e-44
Identity = 100/184 (54.35%), Postives = 121/184 (65.76%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           ML   R R SS   +  +  +L    +F    + SSS   S    +L L EVE IL  VK
Sbjct: 1   MLTTLRSRCSSLLLN--QSWKLAPNRIFASSPSFSSSAGISNVSEILTLPEVEKILADVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           AD+V VIP    C WAD+ V ATGRS WH++NIAQAL+Y+ KQKQKGA+ ++LPSV+G  
Sbjct: 61  ADNVTVIPTHNHCFWADFTVIATGRSDWHLRNIAQALVYRAKQKQKGAKHVMLPSVQGY- 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETP-PDDSAQDLDRALVKIRPKNNSKK 180
             KWIVID GK VVHALDE AR Y+NLESLWS E+   D S QDL    VK+RPKNNSK+
Sbjct: 121 NSKWIVIDYGKFVVHALDEKARGYFNLESLWSAESSGTDTSDQDLQNVFVKVRPKNNSKR 180

Query: 181 KPTQ 184
           KP +
Sbjct: 181 KPAK 181

[Close]

BLAST of CSPI02G17720 vs. ExPASy Swiss-Prot
Match: Q02SH2 (Ribosomal silencing factor RsfS OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=rsfS PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 56  LNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPS 115
           L  +KA D+  + VR      DYMV A G S+  VK++A  ++   K K+ G + L    
Sbjct: 14  LEDLKAQDIVTLDVRDKTSVTDYMVIACGSSSRQVKSLADNVL--TKAKENGVKPL---G 73

Query: 116 VEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLW 152
            EG E G+W ++D G VVVH +    R +Y+LE LW
Sbjct: 74  SEGLESGEWALLDLGDVVVHVMLPATRQFYDLERLW 104

[Close]

BLAST of CSPI02G17720 vs. ExPASy Swiss-Prot
Match: Q5NLX3 (Ribosomal silencing factor RsfS OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) OX=264203 GN=rsfS PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-10
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 49  LKEVETILNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGA 108
           LK V   L+  +A ++  IP+      ADYMV A+GRS+  V  +AQ L  +IK     A
Sbjct: 20  LKLVTDSLDDDQALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLADRIK-----A 79

Query: 109 RQLVLPSVEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRAL 168
               +  +EG     W+++D+G +++H      RS+YNLE +W      D+S Q + +++
Sbjct: 80  ATGYVSKIEGLPAADWVLLDAGDIIIHLFRPEVRSFYNLERMWGF---GDESDQPVSQSV 132

Query: 169 V 170
           +
Sbjct: 140 L 132

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BLAST of CSPI02G17720 vs. ExPASy Swiss-Prot
Match: P0AAT7 (Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rsfS PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-10
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 56  LNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPS 115
           ++ +K  D+  + V+      D M+  TG S+ HV +IA  ++    Q+ + A  L L  
Sbjct: 14  IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAGLLPL-G 73

Query: 116 VEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWS 153
           VEG+    WIV+D G V+VH + E +R  Y LE LWS
Sbjct: 74  VEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

[Close]

BLAST of CSPI02G17720 vs. ExPASy Swiss-Prot
Match: P0AAT6 (Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12) OX=83333 GN=rsfS PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-10
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 0


Query: 56  LNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPS 115
           ++ +K  D+  + V+      D M+  TG S+ HV +IA  ++    Q+ + A  L L  
Sbjct: 14  IDDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAGLLPL-G 73

Query: 116 VEGQEEGKWIVIDSGKVVVHALDENARSYYNLESLWS 153
           VEG+    WIV+D G V+VH + E +R  Y LE LWS
Sbjct: 74  VEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105

[Close]

BLAST of CSPI02G17720 vs. ExPASy TrEMBL
Match: A0A0A0LNG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350450 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.0e-99
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK
Sbjct: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK
Sbjct: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180

Query: 181 PTQKTP 187
           PTQKTP
Sbjct: 181 PTQKTP 186

[Close]

BLAST of CSPI02G17720 vs. ExPASy TrEMBL
Match: A0A1S3BB26 (protein Iojap-related, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103487755 PE=3 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.7e-94
Identity = 177/186 (95.16%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           MLAAQRIRSSSAFSSTIRFLQLWNRGV VH HALSSST+ SPDKSLLDL+EVETILNKVK
Sbjct: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIY++KQKQKGA+QLVLPSVEGQE
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK
Sbjct: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180

Query: 181 PTQKTP 187
           P QKTP
Sbjct: 181 PAQKTP 186

[Close]

BLAST of CSPI02G17720 vs. ExPASy TrEMBL
Match: A0A5A7UYH0 (Protein Iojap-related OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001580 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.6e-94
Identity = 176/186 (94.62%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           MLAAQRIR SSAFSSTIRFLQLWNRGV VH HALSSST+ SPDKSLLDL+EVETILNKVK
Sbjct: 1   MLAAQRIRYSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIY++KQKQKGA+QLVLPSVEGQE
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK
Sbjct: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180

Query: 181 PTQKTP 187
           P QKTP
Sbjct: 181 PAQKTP 186

[Close]

BLAST of CSPI02G17720 vs. ExPASy TrEMBL
Match: A0A6J1BP74 (protein Iojap-related, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111004570 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 4.0e-83
Identity = 158/184 (85.87%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           ML AQRIRSSSAFSSTIR LQ WN+G+FVH H +SSSTA S +  LLDL+EVET+LN VK
Sbjct: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           ADDVKVIP+RKDCDWADYMVFATGRSTWHVKNIAQALIY+IKQKQKGARQL+LPSVEGQE
Sbjct: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKIKQKQKGARQLILPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           +GKWIVIDSGKVVVHALDENAR+YYNLESLWSTET PDDS+QDLDRALVKIR KNNS KK
Sbjct: 121 DGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQDLDRALVKIRRKNNS-KK 180

Query: 181 PTQK 185
           P QK
Sbjct: 181 PAQK 183

[Close]

BLAST of CSPI02G17720 vs. ExPASy TrEMBL
Match: A0A6J1KB66 (protein Iojap-related, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492299 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 8.4e-81
Identity = 158/184 (85.87%), Postives = 169/184 (91.85%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           MLAAQRIRSSSA SSTIR LQLWNRGV V  H LSSSTA S ++ LLDL+EVETILN VK
Sbjct: 1   MLAAQRIRSSSAISSTIRCLQLWNRGVSVRNHTLSSSTASSINEGLLDLQEVETILNNVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           ADDV+VIPVRKDCDWADYMVFATGRSTWHVKNIAQALIY++KQKQKGARQLVLPSVEGQE
Sbjct: 61  ADDVRVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGARQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           +GKWIVIDSGKVVVHALDE AR+YYNLESLWST+TP DDS+Q+LDRALVKIR KNNS KK
Sbjct: 121 DGKWIVIDSGKVVVHALDEKARTYYNLESLWSTDTPQDDSSQELDRALVKIRRKNNS-KK 180

Query: 181 PTQK 185
           P QK
Sbjct: 181 PAQK 183

[Close]

BLAST of CSPI02G17720 vs. NCBI nr
Match: XP_011649516.1 (protein Iojap-related, mitochondrial [Cucumis sativus] >KGN62362.1 hypothetical protein Csa_018559 [Cucumis sativus])

HSP 1 Score: 370.5 bits (950), Expect = 8.3e-99
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK
Sbjct: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK
Sbjct: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180

Query: 181 PTQKTP 187
           PTQKTP
Sbjct: 181 PTQKTP 186

[Close]

BLAST of CSPI02G17720 vs. NCBI nr
Match: XP_008444425.1 (PREDICTED: protein Iojap-related, mitochondrial [Cucumis melo])

HSP 1 Score: 355.1 bits (910), Expect = 3.6e-94
Identity = 177/186 (95.16%), Postives = 182/186 (97.85%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           MLAAQRIRSSSAFSSTIRFLQLWNRGV VH HALSSST+ SPDKSLLDL+EVETILNKVK
Sbjct: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIY++KQKQKGA+QLVLPSVEGQE
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK
Sbjct: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180

Query: 181 PTQKTP 187
           P QKTP
Sbjct: 181 PAQKTP 186

[Close]

BLAST of CSPI02G17720 vs. NCBI nr
Match: KAA0061023.1 (protein Iojap-related [Cucumis melo var. makuwa])

HSP 1 Score: 352.8 bits (904), Expect = 1.8e-93
Identity = 176/186 (94.62%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           MLAAQRIR SSAFSSTIRFLQLWNRGV VH HALSSST+ SPDKSLLDL+EVETILNKVK
Sbjct: 1   MLAAQRIRYSSAFSSTIRFLQLWNRGVSVHSHALSSSTSSSPDKSLLDLQEVETILNKVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIY++KQKQKGA+QLVLPSVEGQE
Sbjct: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGAKQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK
Sbjct: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180

Query: 181 PTQKTP 187
           P QKTP
Sbjct: 181 PAQKTP 186

[Close]

BLAST of CSPI02G17720 vs. NCBI nr
Match: XP_038884261.1 (protein Iojap-related, mitochondrial [Benincasa hispida])

HSP 1 Score: 321.2 bits (822), Expect = 5.8e-84
Identity = 164/184 (89.13%), Postives = 172/184 (93.48%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           MLAAQRI+SSSAFSSTIR LQLWNRGV VH HALSSSTA S +K LLDL+EVETILN VK
Sbjct: 1   MLAAQRIQSSSAFSSTIRSLQLWNRGVSVHNHALSSSTASSTNKGLLDLQEVETILNNVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           ADDVKVI VRK+CDWADYMVFATGRSTWHVKNIAQALIY++KQKQKGARQLVLPSVEGQE
Sbjct: 61  ADDVKVILVRKECDWADYMVFATGRSTWHVKNIAQALIYKVKQKQKGARQLVLPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           +GKWIVIDSGKVVVHALDENARSYYNLESLWSTETP DDS+QDLDRA VKIRPKNNS KK
Sbjct: 121 DGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPQDDSSQDLDRAFVKIRPKNNS-KK 180

Query: 181 PTQK 185
           P QK
Sbjct: 181 PAQK 183

[Close]

BLAST of CSPI02G17720 vs. NCBI nr
Match: XP_022131306.1 (protein Iojap-related, mitochondrial [Momordica charantia])

HSP 1 Score: 317.4 bits (812), Expect = 8.3e-83
Identity = 158/184 (85.87%), Postives = 170/184 (92.39%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           ML AQRIRSSSAFSSTIR LQ WN+G+FVH H +SSSTA S +  LLDL+EVET+LN VK
Sbjct: 1   MLVAQRIRSSSAFSSTIRSLQQWNKGIFVHNHTVSSSTASSSNNGLLDLQEVETVLNNVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           ADDVKVIP+RKDCDWADYMVFATGRSTWHVKNIAQALIY+IKQKQKGARQL+LPSVEGQE
Sbjct: 61  ADDVKVIPIRKDCDWADYMVFATGRSTWHVKNIAQALIYKIKQKQKGARQLILPSVEGQE 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETPPDDSAQDLDRALVKIRPKNNSKKK 180
           +GKWIVIDSGKVVVHALDENAR+YYNLESLWSTET PDDS+QDLDRALVKIR KNNS KK
Sbjct: 121 DGKWIVIDSGKVVVHALDENARTYYNLESLWSTETAPDDSSQDLDRALVKIRRKNNS-KK 180

Query: 181 PTQK 185
           P QK
Sbjct: 181 PAQK 183

[Close]

BLAST of CSPI02G17720 vs. TAIR 10
Match: AT1G67620.1 (Lojap-related protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-45
Identity = 100/184 (54.35%), Postives = 121/184 (65.76%), Query Frame = 0


Query: 1   MLAAQRIRSSSAFSSTIRFLQLWNRGVFVHGHALSSSTAGSPDKSLLDLKEVETILNKVK 60
           ML   R R SS   +  +  +L    +F    + SSS   S    +L L EVE IL  VK
Sbjct: 1   MLTTLRSRCSSLLLN--QSWKLAPNRIFASSPSFSSSAGISNVSEILTLPEVEKILADVK 60

Query: 61  ADDVKVIPVRKDCDWADYMVFATGRSTWHVKNIAQALIYQIKQKQKGARQLVLPSVEGQE 120
           AD+V VIP    C WAD+ V ATGRS WH++NIAQAL+Y+ KQKQKGA+ ++LPSV+G  
Sbjct: 61  ADNVTVIPTHNHCFWADFTVIATGRSDWHLRNIAQALVYRAKQKQKGAKHVMLPSVQGY- 120

Query: 121 EGKWIVIDSGKVVVHALDENARSYYNLESLWSTETP-PDDSAQDLDRALVKIRPKNNSKK 180
             KWIVID GK VVHALDE AR Y+NLESLWS E+   D S QDL    VK+RPKNNSK+
Sbjct: 121 NSKWIVIDYGKFVVHALDEKARGYFNLESLWSAESSGTDTSDQDLQNVFVKVRPKNNSKR 180

Query: 181 KPTQ 184
           KP +
Sbjct: 181 KPAK 181

[Close]

BLAST of CSPI02G17720 vs. TAIR 10
Match: AT3G12930.1 (Lojap-related protein )

HSP 1 Score: 46.2 bits (108), Expect = 3.3e-05
Identity = 39/136 (28.68%), Postives = 62/136 (45.59%), Query Frame = 0


Query: 34  LSSSTAGSPD--KSLLDLKEVETILNKVKADDVKVIPVRKDCDWADYMVFATGRSTWHVK 93
           + S TA   D  +SL    E+  + + VKA D+KV+ V+    W  + + AT  S   + 
Sbjct: 107 VKSPTAEVDDDAESLAFAVELAKVASDVKAGDIKVLFVKPLVYWTRFFIIATAFSRPQID 166

Query: 94  NIAQALIYQIKQKQ-KGARQLVLPSVEGQEEGKWIVIDSGKVVVHALDENARSYYNLESL 153
            I   +    ++K  K A   V P+        W ++D G VV+H      R++YNLE  
Sbjct: 167 AIGSRMRDLAEKKYGKVANGDVKPN-------SWTLLDFGDVVIHLFLPPQRTFYNLEDF 226

Query: 154 WST----ETPPDDSAQ 163
           +      E P +D +Q
Sbjct: 227 YGNAMQIELPFEDQSQ 235

The following BLAST results are available for this feature:

BLAST of CSPI02G17720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAF9	2.7e-44	54.35	Protein Iojap-related, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g6762...	[more]
Q02SH2	1.5e-10	38.54	Ribosomal silencing factor RsfS OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX...	[more]
Q5NLX3	3.3e-10	32.23	Ribosomal silencing factor RsfS OS=Zymomonas mobilis subsp. mobilis (strain ATCC...	[more]
P0AAT7	4.4e-10	36.08	Ribosomal silencing factor RsfS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC ...	[more]
P0AAT6	4.4e-10	36.08	Ribosomal silencing factor RsfS OS=Escherichia coli (strain K12) OX=83333 GN=rsf...	[more]

BLAST of CSPI02G17720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNG9	4.0e-99	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350450 PE=3 SV=1	[more]
A0A1S3BB26	1.7e-94	95.16	protein Iojap-related, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103487755 PE=...	[more]
A0A5A7UYH0	8.6e-94	94.62	Protein Iojap-related OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50...	[more]
A0A6J1BP74	4.0e-83	85.87	protein Iojap-related, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J1KB66	8.4e-81	85.87	protein Iojap-related, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492299...	[more]

BLAST of CSPI02G17720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649516.1	8.3e-99	100.00	protein Iojap-related, mitochondrial [Cucumis sativus] >KGN62362.1 hypothetical ...	[more]
XP_008444425.1	3.6e-94	95.16	PREDICTED: protein Iojap-related, mitochondrial [Cucumis melo]	[more]
KAA0061023.1	1.8e-93	94.62	protein Iojap-related [Cucumis melo var. makuwa]	[more]
XP_038884261.1	5.8e-84	89.13	protein Iojap-related, mitochondrial [Benincasa hispida]	[more]
XP_022131306.1	8.3e-83	85.87	protein Iojap-related, mitochondrial [Momordica charantia]	[more]

BLAST of CSPI02G17720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67620.1	1.9e-45	54.35	Lojap-related protein	[more]
AT3G12930.1	3.3e-05	28.68	Lojap-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF02410	RsfS	coord: 51..151 e-value: 2.7E-26 score: 91.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..186
None	No IPR available	PANTHER	PTHR21043:SF0	MITOCHONDRIAL ASSEMBLY OF RIBOSOMAL LARGE SUBUNIT PROTEIN 1	coord: 35..176
IPR043519	Nucleotidyltransferase superfamily	GENE3D	3.30.460.10	Beta Polymerase, domain 2	coord: 47..165 e-value: 2.4E-34 score: 119.5
IPR043519	Nucleotidyltransferase superfamily	SUPERFAMILY	81301	Nucleotidyltransferase	coord: 50..155
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	TIGRFAM	TIGR00090	TIGR00090	coord: 50..151 e-value: 6.9E-26 score: 88.3
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	PANTHER	PTHR21043	IOJAP SUPERFAMILY ORTHOLOG	coord: 35..176
IPR004394	Protein Iojap/ribosomal silencing factor RsfS	HAMAP	MF_01477	Iojap_RsfS	coord: 41..152 score: 19.978792

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G17720.1	CSPI02G17720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0090071	negative regulation of ribosome biogenesis
biological_process	GO:0017148	negative regulation of translation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004316	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0043023	ribosomal large subunit binding