CSPI02G00590 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G00590
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S30
LocationChr2: 352045 .. 352798 (+)
RNA-Seq ExpressionCSPI02G00590
SyntenyCSPI02G00590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGCCCACGTTAACTAACCCACTACTATATATATATGTTGGTCCTAAACCCTAACCCTAATCTTTGCCAATTTGCGTTCTTAGTTTCTAGGGGACGAAGCCGACAAGTCAGTCCACCGCCATCCAGAAAGGAAGAAGTCGCTTATCAGATTCGCCATGGGTGACTCTCCCACTCTCTCAACTTCATTTACGATTCCTTTCTTTTCATCTGTTTCATGTTCCTGATATATCTGTTTCTTCATCTCTGTAATCTACATTCAGGTAAGGTTCACGGATCTTTGGCTCGTGCTGGTAAGGTGAGAGGCCAAACACCTAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCTCACAAACGGATGCAATACAACCGCAGATTCGTAACTGCCGGTATGTGTCTATTCTCGCAATTTTCTCTCCCTCTCTCATTTTGTAATTATGTTTCTAGTTTTTTATGAATTTTAATTTCCGCTTGTAGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAAGAGACTCGAGAATTCGGCTGAACAGCCAATTTTTTTTTCATGTTATTTGGAGATATTTTATACTTTCTTTAGTTCTTTTTTGATGTGGTTAAGCTGACAATTTATCTTGACGATGATAGTATTATTTCTTTAAGAAGTTATCTGTTTCATCATTTGATAATTGGCTTATGTTTTAGCAATCTGAGTTTTGTTCTGTTGTTTCGGTAGAAATTATTACTGGG

mRNA sequence

CCGCCCACGTTAACTAACCCACTACTATATATATATGTTGGTCCTAAACCCTAACCCTAATCTTTGCCAATTTGCGTTCTTAGTTTCTAGGGGACGAAGCCGACAAGTCAGTCCACCGCCATCCAGAAAGGAAGAAGTCGCTTATCAGATTCGCCATGGGTAAGGTTCACGGATCTTTGGCTCGTGCTGGTAAGGTGAGAGGCCAAACACCTAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCTCACAAACGGATGCAATACAACCGCAGATTCGTAACTGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAAGAGACTCGAGAATTCGGCTGAACAGCCAATTTTTTTTTCATGTTATTTGGAGATATTTTATACTTTCTTTAGTTCTTTTTTGATGTGGTTAAGCTGACAATTTATCTTGACGATGATAGTATTATTTCTTTAAGAAGTTATCTGTTTCATCATTTGATAATTGGCTTATGTTTTAGCAATCTGAGTTTTGTTCTGTTGTTTCGGTAGAAATTATTACTGGG

Coding sequence (CDS)

ATGGGTAAGGTTCACGGATCTTTGGCTCGTGCTGGTAAGGTGAGAGGCCAAACACCTAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCTCACAAACGGATGCAATACAACCGCAGATTCGTAACTGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAA

Protein sequence

MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK*
Homology
BLAST of CSPI02G00590 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 120.6 bits (301), Expect = 6.6e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of CSPI02G00590 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of CSPI02G00590 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of CSPI02G00590 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of CSPI02G00590 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0

Query: 3  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 61
          KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1  KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

BLAST of CSPI02G00590 vs. ExPASy TrEMBL
Match: A0A368PSS0 (40S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of CSPI02G00590 vs. ExPASy TrEMBL
Match: M5WRX6 (40S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of CSPI02G00590 vs. ExPASy TrEMBL
Match: A0A6J1KXK5 (40S ribosomal protein S30 OS=Cucurbita maxima OX=3661 GN=LOC111498467 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of CSPI02G00590 vs. ExPASy TrEMBL
Match: A0A7I8KYK5 (40S ribosomal protein S30 OS=Spirodela intermedia OX=51605 GN=SI7747_09012508 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of CSPI02G00590 vs. ExPASy TrEMBL
Match: C5XV41 (40S ribosomal protein S30 OS=Sorghum bicolor OX=4558 GN=SORBI_3004G335600 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of CSPI02G00590 vs. NCBI nr
Match: CAA2953813.1 (40s ribosomal s30 [Olea europaea subsp. europaea])

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 48  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 107

Query: 61  EK 63
           EK
Sbjct: 108 EK 109

BLAST of CSPI02G00590 vs. NCBI nr
Match: KAG6599498.1 (40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 50  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 109

Query: 61  EK 63
           EK
Sbjct: 110 EK 111

BLAST of CSPI02G00590 vs. NCBI nr
Match: ESR64610.1 (hypothetical protein CICLE_v10009868mg [Citrus clementina] >GAY50417.1 hypothetical protein CUMW_126480 [Citrus unshiu])

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 72  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 131

Query: 61  EK 63
           EK
Sbjct: 132 EK 133

BLAST of CSPI02G00590 vs. NCBI nr
Match: PIA64528.1 (hypothetical protein AQUCO_00100184v1, partial [Aquilegia coerulea])

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 42  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 101

Query: 61  EK 63
           EK
Sbjct: 102 EK 103

BLAST of CSPI02G00590 vs. NCBI nr
Match: KAG7021908.1 (40S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 5.9e-25
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of CSPI02G00590 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of CSPI02G00590 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

BLAST of CSPI02G00590 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-28
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
          MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 61 EK 63
          EK
Sbjct: 61 EK 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P496896.6e-2796.7740S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3[more]
P628663.3e-1879.3140S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1[more]
P628603.3e-1879.3140S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1[more]
P628613.3e-1879.3140S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1[more]
P628623.3e-1879.3140S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A368PSS02.9e-25100.0040S ribosomal protein S30 OS=Setaria italica OX=4555 GN=SETIT_1G356000v2 PE=3 SV... [more]
M5WRX62.9e-25100.0040S ribosomal protein S30 OS=Prunus persica OX=3760 GN=PRUPE_3G053900 PE=3 SV=1[more]
A0A6J1KXK52.9e-25100.0040S ribosomal protein S30 OS=Cucurbita maxima OX=3661 GN=LOC111498467 PE=3 SV=1[more]
A0A7I8KYK52.9e-25100.0040S ribosomal protein S30 OS=Spirodela intermedia OX=51605 GN=SI7747_09012508 PE... [more]
C5XV412.9e-25100.0040S ribosomal protein S30 OS=Sorghum bicolor OX=4558 GN=SORBI_3004G335600 PE=3 S... [more]
Match NameE-valueIdentityDescription
CAA2953813.15.9e-25100.0040s ribosomal s30 [Olea europaea subsp. europaea][more]
KAG6599498.15.9e-25100.0040S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. sororia][more]
ESR64610.15.9e-25100.00hypothetical protein CICLE_v10009868mg [Citrus clementina] >GAY50417.1 hypotheti... [more]
PIA64528.15.9e-25100.00hypothetical protein AQUCO_00100184v1, partial [Aquilegia coerulea][more]
KAG7021908.15.9e-25100.0040S ribosomal protein S30, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
AT2G19750.14.7e-2896.77Ribosomal protein S30 family protein [more]
AT4G29390.14.7e-2896.77Ribosomal protein S30 family protein [more]
AT5G56670.14.7e-2896.77Ribosomal protein S30 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006846Ribosomal protein S30PFAMPF04758Ribosomal_S30coord: 17..73
e-value: 3.0E-30
score: 104.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..50
NoneNo IPR availablePANTHERPTHR1265040S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBIcoord: 16..76
NoneNo IPR availablePANTHERPTHR12650:SF2840S RIBOSOMAL PROTEIN S30coord: 16..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G00590.1CSPI02G00590.1mRNA
CSPI02G00590.2CSPI02G00590.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006914 autophagy
biological_process GO:0048208 COPII vesicle coating
biological_process GO:0015031 protein transport
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0070971 endoplasmic reticulum exit site
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0003735 structural constituent of ribosome