CSPI01G23420 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATATTTAAAGAAATTGGATTTTAAAATGGGAAATCTGTAGGGATGATCTAAACCAAATGATTAGAATTTAAAAAAATAGAATAATGTTTTGTTGACCTAAGTTTGAGTGAAACTATCAAAATAAAGTTTCCTAGGAGGAAAGGTGTGTGTTGTTGGGAGTGAATATCCATGATTGAACACAAGATCACTAAAGAATGGAATGAGAGAGGGTTGTTGATTTTGGATCATATAAGAAGAGAAACTTTGATTTCAATCAAGTTGGAGTTGGAGAAGAAGAGAGAAAGAACGAACAAATTTATAACTTCACCTCAAACTAAGAACAATTGTCATTTCCGCCCCTGAAATAGATTTTTTAAAAAAATAGAAAGAAAAAGGAAAAGCCTTCCTCTCCTCCTTCTCACGCCTATCTTCCTTCTCCTCCTACAACTCATTGCCTCCGCCGCCGTCACATCCAACTCTCTCCACCGTTTTGTTTGCCCCTTTTCCTTTCTCTCCCTATATCTCTCTCCGCTGCAGGCGCACGCCGGAAACATCCCATTTCATCTCTCTCTGCTTCAACTGCTCCGGCACTCGCGACTGCCCAGTCTTTTTCTACTCGTCGCTCACTACCCTACGCATTCTTCCGCCAAAGACGAAAACCACACTCTATCTTCCGCTTCGGTCGCTCAGTTCGCAGGGATAAGTCGTTGCCCATCTTCATTTTCTTTCTGAGTCACCAATTTGTTAACAGGATACTATCTGGTTCTGATGCCTCTCATAAGTTACAAAACCCTCTCTGCTCTCTTCCTGAAGAATCGTCTTATTCCACTGTGATTTGGGGTGGCAATAATCAGATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTTCGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGACGATCACTGACTTTCAGCCGGATTCCAGCCGACCCATCTGGGGATTCCGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAGAAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGAAGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCTGTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCAAGGTTTATTTCCATTTCCTTTTCTTCAATATGTTCTGTCGTTTTTGTTGCTCTTTCTGGATCTTCACATTCATTTTAGATTTTACGTAATGGGTCGTCTCAGAAATTGATAATTGGCTTCTGTACATTACACATAATATCGCTCTTGTTTGTTGTCACTGCAACTTCTTTTTCTTGTTAGTTGATGCTGTGAGTTTTCTTCTTAACTGTGATGTTATTGATGGTTAGTTCCTTTATTGAATAACTTTACTAATGCTGCATTCAAGGTTCTATTCTGTTCTTGAATTTGGAAGATTATGTTTCTCAGCTTCTAGCTTCCTTAGTATCAATATGATGTTCTTGACTTTTTCCCTGCATCCTTTCATGGAGCTCTTGTGCAATTTTTATTAAGTTTCAATTATTTCCTTCTTTATTCATGGTAGTAATCGAAGAATGGTTAAGGGAGGTCAGAGAGGAAGTAAATTGTGTATTGGGGTTCCTTTAAATGATATTGTTATTTTCGCACTTCGTCTCAATAGTTTAGCTTGATTTATGTCGATGTTGCTCTTGCATTCAAAATTATTTCTTCCTTTTGAATACCGTCTTGCTTTTCTCCTGCTTAACTCTGATCTTCCCCTTTGAGTGCTTATCAGATCTACATCAAATGTTTCGAATGAGTTAAAGGTCTCAAATATGGAACATAGTTCATTTTAGTTGCGTGTGGAAACATTTTCTTTTACATTCTTTTTATCTTCAAGATTGAATTGATTTTACTTCATTAGTTTCTGGCAATCTTACATGCTTGTTGAAATTTCCAGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGATGAAAGGTCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTGAGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCCAGAAGAGATATTCAGCCTACGTTGATGTATGTTTTATGCAACTCTTTTTTCTCTTTAACTCTTTTCTTCCCAATTAATGTTGATTTTTTTTCTTGTATTCTGAAGGTTGGTAACTTGGTACCACTTAATAGGCAGTAATAGTAGCCCCTTTGCCATTCTATGCTTCCTTGTGACATTTAATATCTTGTGAATTTTTAAATACCAAATATTTTTCACTTTTCCAAAAATATGGGAAGCGACCAAAACGTGCCTGTGAGTAAAATTAGCTTGAGAAACCCAAAAAAGGTTGGATAAGAGTCAGTCAGATGTAAAACGAGTCATGTGGATAGTAGTTGAGTTGGAGCTGAGAACGCTCTTAGTCTTAGGAATTAGGATTCTCTTGGGAAGAGGATCAATCAAGTGAGTCGTGTTATCCTTGTGTTTAGAACTTGATACTATCCTCTTCCAGCCCTTTAAATGAAATGCAGCAAAACTAAAGGAAGGAAAATTCATAGATCAACACCATCGTCTCCGCTCTATGGAAACTACATACTGCAAGATCACCTGGTGTATGTCTTCAATATATAGGTTATGAACCAACCATAGAGTTCTATTCGACAGGTGAGGAGCTTATCCTTCACCCTCCCATTTTGTGTTAAAGGGCGTTTTTTTGTAACAGACTGGGGTATATGCTATTTTGTTGGGGCTTTGTGGAGTGGGACAATAGAATGTTCAAAGGTTAGGATAGTTTTTCAAACGATATTTAGTCCCTCATTAGATTCTCTTTTTCTAAACTCTTCGTAAGTTGTAACTATTTGCCTAATTGTATTGCTCTAGGCTGGAGTCCTTTGTAGCTTGGCGTGTATTCTGCTGTTTATTCATAATGAAAAGTGGAATGCATTGGTTGTCCGCACTTTTGTTGGTTTAGTAGATTCTTTTGGAAGAGTACACCGATGTAGAGTTTTATTAAACGTAAAAAGTGTTGTAACAATAACAAATCGACCTTTAGCACTTTATCTTGCATGGTCTTGTTTTCAAGTACTTCATTGGCCCTGAATTCATCCTAACATTCTATACATCTGATCTTTCTCTTTTTCTCTTTTTAAATTACGCTTCATTTCAGTGAACTAACACGACGGTTTGTCAACGAACATTATTCCGGTTTCTTGATCTTTTCCCTGCTGAAGCTGAAAACAACTAAGTGTGTGAAGCTTGACGATAAGAAACTGCAAGGAGATGGAACTGTTATTGATGACATTTCTCTGGACCCGCATCAACTTGGGATGCAAAGAAGAAGCGAAGGAGATGGTGAAAATACCAAAACTTGAATCAAATGTAGGTGTTCATTTCTGTTTTTAGAGAGTGCAGTTTGTTGAGGGATCATTGCCCAGAAAATTTCTATTCAACTGACGAATCTGAATGCTACAAAGAAACTTATCCTTCCAGCTTTTTAAAATCTTAATTTTACTCTTTTTCAAGTTTATTAAATTAAACCCTTGTGTTAATTTTAATGCAAGTCATAAAGTTCAAAGGC TATATTTAAAGAAATTGGATTTTAAAATGGGAAATCTGTAGGGATGATCTAAACCAAATGATTAGAATTTAAAAAAATAGAATAATGTTTTGTTGACCTAAGTTTGAGTGAAACTATCAAAATAAAGTTTCCTAGGAGGAAAGGTGTGTGTTGTTGGGAGTGAATATCCATGATTGAACACAAGATCACTAAAGAATGGAATGAGAGAGGGTTGTTGATTTTGGATCATATAAGAAGAGAAACTTTGATTTCAATCAAGTTGGAGTTGGAGAAGAAGAGAGAAAGAACGAACAAATTTATAACTTCACCTCAAACTAAGAACAATTGTCATTTCCGCCCCTGAAATAGATTTTTTAAAAAAATAGAAAGAAAAAGGAAAAGCCTTCCTCTCCTCCTTCTCACGCCTATCTTCCTTCTCCTCCTACAACTCATTGCCTCCGCCGCCGTCACATCCAACTCTCTCCACCGTTTTGTTTGCCCCTTTTCCTTTCTCTCCCTATATCTCTCTCCGCTGCAGGCGCACGCCGGAAACATCCCATTTCATCTCTCTCTGCTTCAACTGCTCCGGCACTCGCGACTGCCCAGTCTTTTTCTACTCGTCGCTCACTACCCTACGCATTCTTCCGCCAAAGACGAAAACCACACTCTATCTTCCGCTTCGGTCGCTCAGTTCGCAGGGATAAGTCGTTGCCCATCTTCATTTTCTTTCTGAGTCACCAATTTGTTAACAGGATACTATCTGGTTCTGATGCCTCTCATAAGTTACAAAACCCTCTCTGCTCTCTTCCTGAAGAATCGTCTTATTCCACTGTGATTTGGGGTGGCAATAATCAGATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTTCGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGACGATCACTGACTTTCAGCCGGATTCCAGCCGACCCATCTGGGGATTCCGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAGAAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGAAGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCTGTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCAAGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGATGAAAGGTCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTGAGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCCAGAAGAGATATTCAGCCTACGTTGATTGAACTAACACGACGGTTTGTCAACGAACATTATTCCGGTTTCTTGATCTTTTCCCTGCTGAAGCTGAAAACAACTAAGTGTGTGAAGCTTGACGATAAGAAACTGCAAGGAGATGGAACTGTTATTGATGACATTTCTCTGGACCCGCATCAACTTGGGATGCAAAGAAGAAGCGAAGGAGATGGTGAAAATACCAAAACTTGAATCAAATGTAGGTGTTCATTTCTGTTTTTAGAGAGTGCAGTTTGTTGAGGGATCATTGCCCAGAAAATTTCTATTCAACTGACGAATCTGAATGCTACAAAGAAACTTATCCTTCCAGCTTTTTAAAATCTTAATTTTACTCTTTTTCAAGTTTATTAAATTAAACCCTTGTGTTAATTTTAATGCAAGTCATAAAGTTCAAAGGC ATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTTCGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGACGATCACTGACTTTCAGCCGGATTCCAGCCGACCCATCTGGGGATTCCGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAGAAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGAAGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCTGTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCAAGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGATGAAAGGTCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTGAGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCCAGAAGAGATATTCAGCCTACGTTGA MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR* Homology
BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1) HSP 1 Score: 352.4 bits (903), Expect = 4.2e-96 Identity = 172/253 (67.98%), Postives = 208/253 (82.21%), Query Frame = 0
BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 1.8e-46 Identity = 82/181 (45.30%), Postives = 132/181 (72.93%), Query Frame = 0
BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2) HSP 1 Score: 63.5 bits (153), Expect = 3.9e-09 Identity = 46/158 (29.11%), Postives = 78/158 (49.37%), Query Frame = 0
BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot
Match: Q9FMQ1 (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 5.1e-09 Identity = 40/130 (30.77%), Postives = 66/130 (50.77%), Query Frame = 0
BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot
Match: Q9LUR2 (Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g16710 PE=3 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 4.3e-08 Identity = 31/98 (31.63%), Postives = 54/98 (55.10%), Query Frame = 0
BLAST of CSPI01G23420 vs. ExPASy TrEMBL
Match: A0A0A0LVE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1) HSP 1 Score: 516.5 bits (1329), Expect = 6.2e-143 Identity = 253/255 (99.22%), Postives = 254/255 (99.61%), Query Frame = 0
BLAST of CSPI01G23420 vs. ExPASy TrEMBL
Match: A0A5A7SRJ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00030 PE=4 SV=1) HSP 1 Score: 501.5 bits (1290), Expect = 2.1e-138 Identity = 245/255 (96.08%), Postives = 250/255 (98.04%), Query Frame = 0
BLAST of CSPI01G23420 vs. ExPASy TrEMBL
Match: A0A1S3C5H5 (pentatricopeptide repeat-containing protein At3g46870 OS=Cucumis melo OX=3656 GN=LOC103497124 PE=4 SV=1) HSP 1 Score: 501.5 bits (1290), Expect = 2.1e-138 Identity = 245/255 (96.08%), Postives = 250/255 (98.04%), Query Frame = 0
BLAST of CSPI01G23420 vs. ExPASy TrEMBL
Match: A0A5D3BE11 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001780 PE=4 SV=1) HSP 1 Score: 484.6 bits (1246), Expect = 2.6e-133 Identity = 237/247 (95.95%), Postives = 242/247 (97.98%), Query Frame = 0
BLAST of CSPI01G23420 vs. ExPASy TrEMBL
Match: A0A6J1E045 (pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=3673 GN=LOC111024687 PE=4 SV=1) HSP 1 Score: 474.6 bits (1220), Expect = 2.7e-130 Identity = 230/255 (90.20%), Postives = 247/255 (96.86%), Query Frame = 0
BLAST of CSPI01G23420 vs. NCBI nr
Match: XP_008457435.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo] >KAA0031765.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 501.5 bits (1290), Expect = 4.3e-138 Identity = 245/255 (96.08%), Postives = 250/255 (98.04%), Query Frame = 0
BLAST of CSPI01G23420 vs. NCBI nr
Match: KAE8653270.1 (hypothetical protein Csa_023162 [Cucumis sativus]) HSP 1 Score: 500.7 bits (1288), Expect = 7.3e-138 Identity = 245/247 (99.19%), Postives = 246/247 (99.60%), Query Frame = 0
BLAST of CSPI01G23420 vs. NCBI nr
Match: XP_004145279.2 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >XP_031741152.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KAE8653263.1 hypothetical protein Csa_020110 [Cucumis sativus]) HSP 1 Score: 500.7 bits (1288), Expect = 7.3e-138 Identity = 245/247 (99.19%), Postives = 246/247 (99.60%), Query Frame = 0
BLAST of CSPI01G23420 vs. NCBI nr
Match: XP_038895593.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895594.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895595.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida]) HSP 1 Score: 495.4 bits (1274), Expect = 3.0e-136 Identity = 239/255 (93.73%), Postives = 249/255 (97.65%), Query Frame = 0
BLAST of CSPI01G23420 vs. NCBI nr
Match: TYJ97367.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 484.6 bits (1246), Expect = 5.4e-133 Identity = 237/247 (95.95%), Postives = 242/247 (97.98%), Query Frame = 0
BLAST of CSPI01G23420 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 352.4 bits (903), Expect = 3.0e-97 Identity = 172/253 (67.98%), Postives = 208/253 (82.21%), Query Frame = 0
BLAST of CSPI01G23420 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 187.6 bits (475), Expect = 1.3e-47 Identity = 82/181 (45.30%), Postives = 132/181 (72.93%), Query Frame = 0
BLAST of CSPI01G23420 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain ) HSP 1 Score: 86.7 bits (213), Expect = 3.0e-17 Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 0
BLAST of CSPI01G23420 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 63.5 bits (153), Expect = 2.8e-10 Identity = 46/158 (29.11%), Postives = 78/158 (49.37%), Query Frame = 0
BLAST of CSPI01G23420 vs. TAIR 10
Match: AT1G77340.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10 Identity = 33/103 (32.04%), Postives = 62/103 (60.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|