CSPI01G23420 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G23420
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Pentatricopeptide repeat-containing protein
Location	Chr1: 18993725 .. 18997608 (+)
RNA-Seq Expression	CSPI01G23420
Synteny	CSPI01G23420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATTTAAAGAAATTGGATTTTAAAATGGGAAATCTGTAGGGATGATCTAAACCAAATGATTAGAATTTAAAAAAATAGAATAATGTTTTGTTGACCTAAGTTTGAGTGAAACTATCAAAATAAAGTTTCCTAGGAGGAAAGGTGTGTGTTGTTGGGAGTGAATATCCATGATTGAACACAAGATCACTAAAGAATGGAATGAGAGAGGGTTGTTGATTTTGGATCATATAAGAAGAGAAACTTTGATTTCAATCAAGTTGGAGTTGGAGAAGAAGAGAGAAAGAACGAACAAATTTATAACTTCACCTCAAACTAAGAACAATTGTCATTTCCGCCCCTGAAATAGATTTTTTAAAAAAATAGAAAGAAAAAGGAAAAGCCTTCCTCTCCTCCTTCTCACGCCTATCTTCCTTCTCCTCCTACAACTCATTGCCTCCGCCGCCGTCACATCCAACTCTCTCCACCGTTTTGTTTGCCCCTTTTCCTTTCTCTCCCTATATCTCTCTCCGCTGCAGGCGCACGCCGGAAACATCCCATTTCATCTCTCTCTGCTTCAACTGCTCCGGCACTCGCGACTGCCCAGTCTTTTTCTACTCGTCGCTCACTACCCTACGCATTCTTCCGCCAAAGACGAAAACCACACTCTATCTTCCGCTTCGGTCGCTCAGTTCGCAGGGATAAGTCGTTGCCCATCTTCATTTTCTTTCTGAGTCACCAATTTGTTAACAGGATACTATCTGGTTCTGATGCCTCTCATAAGTTACAAAACCCTCTCTGCTCTCTTCCTGAAGAATCGTCTTATTCCACTGTGATTTGGGGTGGCAATAATCAGATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTTCGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGACGATCACTGACTTTCAGCCGGATTCCAGCCGACCCATCTGGGGATTCCGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAGAAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGAAGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCTGTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCAAGGTTTATTTCCATTTCCTTTTCTTCAATATGTTCTGTCGTTTTTGTTGCTCTTTCTGGATCTTCACATTCATTTTAGATTTTACGTAATGGGTCGTCTCAGAAATTGATAATTGGCTTCTGTACATTACACATAATATCGCTCTTGTTTGTTGTCACTGCAACTTCTTTTTCTTGTTAGTTGATGCTGTGAGTTTTCTTCTTAACTGTGATGTTATTGATGGTTAGTTCCTTTATTGAATAACTTTACTAATGCTGCATTCAAGGTTCTATTCTGTTCTTGAATTTGGAAGATTATGTTTCTCAGCTTCTAGCTTCCTTAGTATCAATATGATGTTCTTGACTTTTTCCCTGCATCCTTTCATGGAGCTCTTGTGCAATTTTTATTAAGTTTCAATTATTTCCTTCTTTATTCATGGTAGTAATCGAAGAATGGTTAAGGGAGGTCAGAGAGGAAGTAAATTGTGTATTGGGGTTCCTTTAAATGATATTGTTATTTTCGCACTTCGTCTCAATAGTTTAGCTTGATTTATGTCGATGTTGCTCTTGCATTCAAAATTATTTCTTCCTTTTGAATACCGTCTTGCTTTTCTCCTGCTTAACTCTGATCTTCCCCTTTGAGTGCTTATCAGATCTACATCAAATGTTTCGAATGAGTTAAAGGTCTCAAATATGGAACATAGTTCATTTTAGTTGCGTGTGGAAACATTTTCTTTTACATTCTTTTTATCTTCAAGATTGAATTGATTTTACTTCATTAGTTTCTGGCAATCTTACATGCTTGTTGAAATTTCCAGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGATGAAAGGTCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTGAGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCCAGAAGAGATATTCAGCCTACGTTGATGTATGTTTTATGCAACTCTTTTTTCTCTTTAACTCTTTTCTTCCCAATTAATGTTGATTTTTTTTCTTGTATTCTGAAGGTTGGTAACTTGGTACCACTTAATAGGCAGTAATAGTAGCCCCTTTGCCATTCTATGCTTCCTTGTGACATTTAATATCTTGTGAATTTTTAAATACCAAATATTTTTCACTTTTCCAAAAATATGGGAAGCGACCAAAACGTGCCTGTGAGTAAAATTAGCTTGAGAAACCCAAAAAAGGTTGGATAAGAGTCAGTCAGATGTAAAACGAGTCATGTGGATAGTAGTTGAGTTGGAGCTGAGAACGCTCTTAGTCTTAGGAATTAGGATTCTCTTGGGAAGAGGATCAATCAAGTGAGTCGTGTTATCCTTGTGTTTAGAACTTGATACTATCCTCTTCCAGCCCTTTAAATGAAATGCAGCAAAACTAAAGGAAGGAAAATTCATAGATCAACACCATCGTCTCCGCTCTATGGAAACTACATACTGCAAGATCACCTGGTGTATGTCTTCAATATATAGGTTATGAACCAACCATAGAGTTCTATTCGACAGGTGAGGAGCTTATCCTTCACCCTCCCATTTTGTGTTAAAGGGCGTTTTTTTGTAACAGACTGGGGTATATGCTATTTTGTTGGGGCTTTGTGGAGTGGGACAATAGAATGTTCAAAGGTTAGGATAGTTTTTCAAACGATATTTAGTCCCTCATTAGATTCTCTTTTTCTAAACTCTTCGTAAGTTGTAACTATTTGCCTAATTGTATTGCTCTAGGCTGGAGTCCTTTGTAGCTTGGCGTGTATTCTGCTGTTTATTCATAATGAAAAGTGGAATGCATTGGTTGTCCGCACTTTTGTTGGTTTAGTAGATTCTTTTGGAAGAGTACACCGATGTAGAGTTTTATTAAACGTAAAAAGTGTTGTAACAATAACAAATCGACCTTTAGCACTTTATCTTGCATGGTCTTGTTTTCAAGTACTTCATTGGCCCTGAATTCATCCTAACATTCTATACATCTGATCTTTCTCTTTTTCTCTTTTTAAATTACGCTTCATTTCAGTGAACTAACACGACGGTTTGTCAACGAACATTATTCCGGTTTCTTGATCTTTTCCCTGCTGAAGCTGAAAACAACTAAGTGTGTGAAGCTTGACGATAAGAAACTGCAAGGAGATGGAACTGTTATTGATGACATTTCTCTGGACCCGCATCAACTTGGGATGCAAAGAAGAAGCGAAGGAGATGGTGAAAATACCAAAACTTGAATCAAATGTAGGTGTTCATTTCTGTTTTTAGAGAGTGCAGTTTGTTGAGGGATCATTGCCCAGAAAATTTCTATTCAACTGACGAATCTGAATGCTACAAAGAAACTTATCCTTCCAGCTTTTTAAAATCTTAATTTTACTCTTTTTCAAGTTTATTAAATTAAACCCTTGTGTTAATTTTAATGCAAGTCATAAAGTTCAAAGGC

mRNA sequence

TATATTTAAAGAAATTGGATTTTAAAATGGGAAATCTGTAGGGATGATCTAAACCAAATGATTAGAATTTAAAAAAATAGAATAATGTTTTGTTGACCTAAGTTTGAGTGAAACTATCAAAATAAAGTTTCCTAGGAGGAAAGGTGTGTGTTGTTGGGAGTGAATATCCATGATTGAACACAAGATCACTAAAGAATGGAATGAGAGAGGGTTGTTGATTTTGGATCATATAAGAAGAGAAACTTTGATTTCAATCAAGTTGGAGTTGGAGAAGAAGAGAGAAAGAACGAACAAATTTATAACTTCACCTCAAACTAAGAACAATTGTCATTTCCGCCCCTGAAATAGATTTTTTAAAAAAATAGAAAGAAAAAGGAAAAGCCTTCCTCTCCTCCTTCTCACGCCTATCTTCCTTCTCCTCCTACAACTCATTGCCTCCGCCGCCGTCACATCCAACTCTCTCCACCGTTTTGTTTGCCCCTTTTCCTTTCTCTCCCTATATCTCTCTCCGCTGCAGGCGCACGCCGGAAACATCCCATTTCATCTCTCTCTGCTTCAACTGCTCCGGCACTCGCGACTGCCCAGTCTTTTTCTACTCGTCGCTCACTACCCTACGCATTCTTCCGCCAAAGACGAAAACCACACTCTATCTTCCGCTTCGGTCGCTCAGTTCGCAGGGATAAGTCGTTGCCCATCTTCATTTTCTTTCTGAGTCACCAATTTGTTAACAGGATACTATCTGGTTCTGATGCCTCTCATAAGTTACAAAACCCTCTCTGCTCTCTTCCTGAAGAATCGTCTTATTCCACTGTGATTTGGGGTGGCAATAATCAGATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTTCGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGACGATCACTGACTTTCAGCCGGATTCCAGCCGACCCATCTGGGGATTCCGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAGAAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGAAGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCTGTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCAAGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGATGAAAGGTCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTGAGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCCAGAAGAGATATTCAGCCTACGTTGATTGAACTAACACGACGGTTTGTCAACGAACATTATTCCGGTTTCTTGATCTTTTCCCTGCTGAAGCTGAAAACAACTAAGTGTGTGAAGCTTGACGATAAGAAACTGCAAGGAGATGGAACTGTTATTGATGACATTTCTCTGGACCCGCATCAACTTGGGATGCAAAGAAGAAGCGAAGGAGATGGTGAAAATACCAAAACTTGAATCAAATGTAGGTGTTCATTTCTGTTTTTAGAGAGTGCAGTTTGTTGAGGGATCATTGCCCAGAAAATTTCTATTCAACTGACGAATCTGAATGCTACAAAGAAACTTATCCTTCCAGCTTTTTAAAATCTTAATTTTACTCTTTTTCAAGTTTATTAAATTAAACCCTTGTGTTAATTTTAATGCAAGTCATAAAGTTCAAAGGC

Coding sequence (CDS)

ATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTTCGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGACGATCACTGACTTTCAGCCGGATTCCAGCCGACCCATCTGGGGATTCCGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAGAAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGAAGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCTGTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCAAGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGATGAAAGGTCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTGAGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCCAGAAGAGATATTCAGCCTACGTTGA

Protein sequence

MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR*

Homology

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BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 4.2e-96
Identity = 172/253 (67.98%), Postives = 208/253 (82.21%), Query Frame = 0


Query: 2   AIRWFSRSKLPVFASVFLQGLTRRP-IRDVPLPVKSTITDFQPDSSRPIWGF-RLYHDGR 61
           AIR  SR K P FAS+F Q +TR P I  +        T   P   +P   F   +HDGR
Sbjct: 3   AIRVCSR-KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 62

Query: 62  PRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQE 121
           PRGPLWR +K IGKEALFVI GLKR KED+EK +KF+K+HV RLLKLDM+AV+GELERQE
Sbjct: 63  PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 122 EVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 181
           E ALA+K+F +I+KQ+WY+PDV++YKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTY
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 182

Query: 182 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELF 241
           TEVIRGFLR G P+DAMNVYEDM KSPDPP+ELPFR+L+KGLLPHPLLRN+VK+DFEELF
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 242

Query: 242 PDQHVFDPPEEIF 253
           P++H +DPPEEIF
Sbjct: 243 PEKHAYDPPEEIF 254

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BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.8e-46
Identity = 82/181 (45.30%), Postives = 132/181 (72.93%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRL 130
           + KE L   + LKR +    + ++F+ SHVSRLLK D+V+VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYG 190
           +R++ WY+PD++ Y+D+++ LAR+KK+D+  K+WE +++E +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEE 250
            P +AM +Y +M++SPD P  LPFR+++KGL+P+P LR +VK DF ELFP   V+DPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

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BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-09
Identity = 46/158 (29.11%), Postives = 78/158 (49.37%), Query Frame = 0


Query: 66  RSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAV 125
           ++ K   ++A+ +I   +  K   EK     K    +LL   ++  L E         A+
Sbjct: 80  KNTKIASRKAISIILRREATKSIIEK-----KKGSKKLLPRTVLESLHERITALRWESAI 139

Query: 126 KIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRG 185
           ++F L+R+Q WYKP+V IY  LI+ L + K+ + A +L++ M  E    + + YT ++  
Sbjct: 140 QVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSA 199

Query: 186 FLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILMKGLL 223
           + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 200 YSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

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BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot
Match: Q9FMQ1 (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-09
Identity = 40/130 (30.77%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 120 EVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 179
           +V   +++F  + K D   P V+IY  LI  L + K+M+DA +L++ M    L P   TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 180 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRN--RVKQDFEE 239
             +I G+ + G+P  +  V E MK     P  + F  L+KGL    ++ +   V ++ ++
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKD 313

Query: 240 L--FPDQHVF 246
           L   PD   F
Sbjct: 314 LGFVPDAFTF 322

[Close]

BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot
Match: Q9LUR2 (Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g16710 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-08
Identity = 31/98 (31.63%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 124 AVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVI 183
           A ++F L+ +   Y P+  IY  LI    +SK+++D MK++  M ++ +  ++ TYT +I
Sbjct: 312 ARQMFYLMERNGCY-PNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 371

Query: 184 RGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGL 222
           +G+   G P  A  V+  M     PPD   + +L+ GL
Sbjct: 372 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGL 408

[Close]

BLAST of CSPI01G23420 vs. ExPASy TrEMBL
Match: A0A0A0LVE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 6.2e-143
Identity = 253/255 (99.22%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRP 60
           MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDS RPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRIL+KGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDPPEEIFSLR 256
           DQHVFDPPEEIFSLR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of CSPI01G23420 vs. ExPASy TrEMBL
Match: A0A5A7SRJ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00030 PE=4 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.1e-138
Identity = 245/255 (96.08%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRP 60
           MAIRWFSRSKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDSSRPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSP+PPDELPFRIL+KGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDPPEEIFSLR 256
           DQHVFDPPEEIFSLR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of CSPI01G23420 vs. ExPASy TrEMBL
Match: A0A1S3C5H5 (pentatricopeptide repeat-containing protein At3g46870 OS=Cucumis melo OX=3656 GN=LOC103497124 PE=4 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.1e-138
Identity = 245/255 (96.08%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRP 60
           MAIRWFSRSKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDSSRPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSP+PPDELPFRIL+KGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDPPEEIFSLR 256
           DQHVFDPPEEIFSLR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of CSPI01G23420 vs. ExPASy TrEMBL
Match: A0A5D3BE11 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001780 PE=4 SV=1)

HSP 1 Score: 484.6 bits (1246), Expect = 2.6e-133
Identity = 237/247 (95.95%), Postives = 242/247 (97.98%), Query Frame = 0


Query: 9   SKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSR 68
           SKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDSSRPIWGFRLYHDGRPRGPLWRSR
Sbjct: 248 SKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRPRGPLWRSR 307

Query: 69  KAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIF 128
           KAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM+AVLGELERQEEVALAVKIF
Sbjct: 308 KAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEEVALAVKIF 367

Query: 129 RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR 188
           RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR
Sbjct: 368 RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR 427

Query: 189 YGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPP 248
           YGSPSDAMNVYEDMKKSP+PPDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHVFDPP
Sbjct: 428 YGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDPP 487

Query: 249 EEIFSLR 256
           EEIFSLR
Sbjct: 488 EEIFSLR 494

[Close]

BLAST of CSPI01G23420 vs. ExPASy TrEMBL
Match: A0A6J1E045 (pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=3673 GN=LOC111024687 PE=4 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 2.7e-130
Identity = 230/255 (90.20%), Postives = 247/255 (96.86%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRP 60
           MAIR FSRSKLP+FASVFL+GLTRRPIRD+PLPVKS IT FQPDSSRPI GFR YHDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK +KFMKSHVSRLLKLDM++VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLI+KQDWYKPDV++YKDLIIALA SKKMDDAM+LWESMR+E+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMN+YEDMKKSPDPPDELPFRIL+KGLLPHPLLRN+VKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEELFP 240

Query: 241 DQHVFDPPEEIFSLR 256
           DQ+V+DPPEEIF LR
Sbjct: 241 DQNVYDPPEEIFGLR 255

[Close]

BLAST of CSPI01G23420 vs. NCBI nr
Match: XP_008457435.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo] >KAA0031765.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 501.5 bits (1290), Expect = 4.3e-138
Identity = 245/255 (96.08%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRP 60
           MAIRWFSRSKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDSSRPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSP+PPDELPFRIL+KGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDPPEEIFSLR 256
           DQHVFDPPEEIFSLR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of CSPI01G23420 vs. NCBI nr
Match: KAE8653270.1 (hypothetical protein Csa_023162 [Cucumis sativus])

HSP 1 Score: 500.7 bits (1288), Expect = 7.3e-138
Identity = 245/247 (99.19%), Postives = 246/247 (99.60%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRP 60
           MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDS RPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRIL+KGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDP 248
           DQHVFDP
Sbjct: 241 DQHVFDP 247

[Close]

BLAST of CSPI01G23420 vs. NCBI nr
Match: XP_004145279.2 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >XP_031741152.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KAE8653263.1 hypothetical protein Csa_020110 [Cucumis sativus])

HSP 1 Score: 500.7 bits (1288), Expect = 7.3e-138
Identity = 245/247 (99.19%), Postives = 246/247 (99.60%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRP 60
           MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDS RPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRIL+KGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDP 248
           DQHVFDP
Sbjct: 241 DQHVFDP 247

[Close]

BLAST of CSPI01G23420 vs. NCBI nr
Match: XP_038895593.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895594.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895595.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida])

HSP 1 Score: 495.4 bits (1274), Expect = 3.0e-136
Identity = 239/255 (93.73%), Postives = 249/255 (97.65%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRP 60
           MAIRWFSRSKLP+FASVFL+GLTRRPIRD  LPVKSTIT FQPDSSRP+WGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFASVFLRGLTRRPIRDSSLPVKSTITGFQPDSSRPLWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV RLLKLDM++VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMISVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLI+KQDWYKPDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMN+YEDMKKSPDPPDELPFRIL+KGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDPPEEIFSLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of CSPI01G23420 vs. NCBI nr
Match: TYJ97367.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 484.6 bits (1246), Expect = 5.4e-133
Identity = 237/247 (95.95%), Postives = 242/247 (97.98%), Query Frame = 0


Query: 9   SKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSR 68
           SKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDSSRPIWGFRLYHDGRPRGPLWRSR
Sbjct: 248 SKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRPRGPLWRSR 307

Query: 69  KAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIF 128
           KAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM+AVLGELERQEEVALAVKIF
Sbjct: 308 KAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEEVALAVKIF 367

Query: 129 RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR 188
           RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR
Sbjct: 368 RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR 427

Query: 189 YGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPP 248
           YGSPSDAMNVYEDMKKSP+PPDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHVFDPP
Sbjct: 428 YGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDPP 487

Query: 249 EEIFSLR 256
           EEIFSLR
Sbjct: 488 EEIFSLR 494

[Close]

BLAST of CSPI01G23420 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 352.4 bits (903), Expect = 3.0e-97
Identity = 172/253 (67.98%), Postives = 208/253 (82.21%), Query Frame = 0


Query: 2   AIRWFSRSKLPVFASVFLQGLTRRP-IRDVPLPVKSTITDFQPDSSRPIWGF-RLYHDGR 61
           AIR  SR K P FAS+F Q +TR P I  +        T   P   +P   F   +HDGR
Sbjct: 3   AIRVCSR-KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 62

Query: 62  PRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQE 121
           PRGPLWR +K IGKEALFVI GLKR KED+EK +KF+K+HV RLLKLDM+AV+GELERQE
Sbjct: 63  PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 122 EVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 181
           E ALA+K+F +I+KQ+WY+PDV++YKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTY
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 182

Query: 182 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELF 241
           TEVIRGFLR G P+DAMNVYEDM KSPDPP+ELPFR+L+KGLLPHPLLRN+VK+DFEELF
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 242

Query: 242 PDQHVFDPPEEIF 253
           P++H +DPPEEIF
Sbjct: 243 PEKHAYDPPEEIF 254

[Close]

BLAST of CSPI01G23420 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-47
Identity = 82/181 (45.30%), Postives = 132/181 (72.93%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRL 130
           + KE L   + LKR +    + ++F+ SHVSRLLK D+V+VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYG 190
           +R++ WY+PD++ Y+D+++ LAR+KK+D+  K+WE +++E +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEE 250
            P +AM +Y +M++SPD P  LPFR+++KGL+P+P LR +VK DF ELFP   V+DPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]

BLAST of CSPI01G23420 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-17
Identity = 69/212 (32.55%), Postives = 104/212 (49.06%), Query Frame = 0


Query: 61  RGPLWRSRKAIGKEALFVIQGLKR---------------FKEDEEKFEKFMKSHVSRLLK 120
           R PL R R  +  EA+  +Q LKR                       ++ + S   RLLK
Sbjct: 496 RKPLQRGR-MLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 555

Query: 121 LDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWE 180
            DMVAVL EL RQ E +LA+K+F  IRK+ WYKP V +Y D+I  +A +  M++   L+ 
Sbjct: 556 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 615

Query: 181 SMR-EENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPH 240
           +M+ E+ L  + + +  ++   L +      M+ Y  M+     PD   FR+L+ GL  +
Sbjct: 616 AMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGLESN 675

Query: 241 PL--LRNRVKQDFEELFPDQHVF-DPPEEIFS 254
               L   V+QD  E + +   F +  EEI S
Sbjct: 676 GEMGLSAIVRQDAHEYYGESLEFIEEDEEISS 706

[Close]

BLAST of CSPI01G23420 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-10
Identity = 46/158 (29.11%), Postives = 78/158 (49.37%), Query Frame = 0


Query: 66  RSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAV 125
           ++ K   ++A+ +I   +  K   EK     K    +LL   ++  L E         A+
Sbjct: 80  KNTKIASRKAISIILRREATKSIIEK-----KKGSKKLLPRTVLESLHERITALRWESAI 139

Query: 126 KIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRG 185
           ++F L+R+Q WYKP+V IY  LI+ L + K+ + A +L++ M  E    + + YT ++  
Sbjct: 140 QVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSA 199

Query: 186 FLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILMKGLL 223
           + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 200 YSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

[Close]

BLAST of CSPI01G23420 vs. TAIR 10
Match: AT1G77340.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 33/103 (32.04%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 117 RQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDS 176
           R++EV  A K+F+ + +   ++ +V  Y  LI  L  +KK+D+A+ L   M+++N  P+ 
Sbjct: 202 RRKEVDAAFKVFKEMTQNGCHRNEV-SYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNV 261

Query: 177 QTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMK 220
           +TYT +I      G  S+AMN+++ M +S   PD+  + +L++
Sbjct: 262 RTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQ 303

The following BLAST results are available for this feature:

BLAST of CSPI01G23420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	4.2e-96	67.98	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	1.8e-46	45.30	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
Q9FKC3	3.9e-09	29.11	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
Q9FMQ1	5.1e-09	30.77	Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop...	[more]
Q9LUR2	4.3e-08	31.63	Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS...	[more]

BLAST of CSPI01G23420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVE9	6.2e-143	99.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1	[more]
A0A5A7SRJ7	2.1e-138	96.08	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C5H5	2.1e-138	96.08	pentatricopeptide repeat-containing protein At3g46870 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3BE11	2.6e-133	95.95	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1E045	2.7e-130	90.20	pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=...	[more]

BLAST of CSPI01G23420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457435.1	4.3e-138	96.08	PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo] ...	[more]
KAE8653270.1	7.3e-138	99.19	hypothetical protein Csa_023162 [Cucumis sativus]	[more]
XP_004145279.2	7.3e-138	99.19	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >XP_031741152...	[more]
XP_038895593.1	3.0e-136	93.73	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_0388955...	[more]
TYJ97367.1	5.4e-133	95.95	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G23420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46870.1	3.0e-97	67.98	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	1.3e-47	45.30	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09320.1	3.0e-17	32.55	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT5G48730.1	2.8e-10	29.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G77340.1	3.6e-10	32.04	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 143..175 e-value: 3.2E-6 score: 24.9 coord: 178..205 e-value: 9.2E-5 score: 20.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 139..187 e-value: 5.7E-10 score: 39.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 140..174 score: 11.125777
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 175..209 score: 10.599635
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 69..255 e-value: 3.1E-56 score: 191.7
None	No IPR available	PANTHER	PTHR46870:SF2	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 2..254
IPR044795	Pentatricopeptide repeat-containing protein THA8L-like	PANTHER	PTHR46870	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 2..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G23420.1	CSPI01G23420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding