CSPI01G21100 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G21100
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein TIFY 5A-like
Location	Chr1: 16615714 .. 16616435 (+)
RNA-Seq Expression	CSPI01G21100
Synteny	CSPI01G21100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCATCCCAATATGGAGCCCCTCTCCAACTTCAACTTGGAACTTTGTCTCTCTCCTCCCTCTTCATCTCCTTCCACCACCACTTCCACCACCACTTCCACCCTTCCCCTCGCCTCCAATTCAACTTCCCAACCCAACCATATCACTCCTATCGGACTCTTCACACCTGATCTTACCGAGATCCAGGTACCATTTCAACTCATCTCTTTCTTTTTCTTTTTCCTCACTTAACCATGCAGGACCCTTTCTGTTCAAATTTCAAAACTCTCTCATCTGTCATTTCCTATCAACTTTTTTTTTTTGCTTAATCAAGACTGTGTGTGTCTATATATATGTAATTACTTATCCCATATTCTTGTATTGTTTGGATTAATGTAGGCAAAGGCAATAATAGTACAAGCCACGAGACAAATGGAGGCCGAGAGATCAAGATGGAGGACGTGTCGAATTAGTTCATCGGCAGAAAGAGTATTGATGACGAACGGGGAAGCTAGCCCCTCCTTGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCTTCGCATTCAAACACTTTCACCCTACGCTCACTAACTTTCCAAATTTTTGGAATAATCGGTGCCTTCTTCATTCTCTCTTCTCTCTTGTCATTTTTCTTCTTTTCCTAGCTAGGAGCTAAGTCTGTGTTTTTGGGTGGTACGTTTTGTATTTGTGCATACTTGGAGCTTATTAATTTTCCA

mRNA sequence

TCTCATCCCAATATGGAGCCCCTCTCCAACTTCAACTTGGAACTTTGTCTCTCTCCTCCCTCTTCATCTCCTTCCACCACCACTTCCACCACCACTTCCACCCTTCCCCTCGCCTCCAATTCAACTTCCCAACCCAACCATATCACTCCTATCGGACTCTTCACACCTGATCTTACCGAGATCCAGGCAAAGGCAATAATAGTACAAGCCACGAGACAAATGGAGGCCGAGAGATCAAGATGGAGGACGTGTCGAATTAGTTCATCGGCAGAAAGAGTATTGATGACGAACGGGGAAGCTAGCCCCTCCTTGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCTTCGCATTCAAACACTTTCACCCTACGCTCACTAACTTTCCAAATTTTTGGAATAATCGGTGCCTTCTTCATTCTCTCTTCTCTCTTGTCATTTTTCTTCTTTTCCTAGCTAGGAGCTAAGTCTGTGTTTTTGGGTGGTACGTTTTGTATTTGTGCATACTTGGAGCTTATTAATTTTCCA

Coding sequence (CDS)

ATGGAGCCCCTCTCCAACTTCAACTTGGAACTTTGTCTCTCTCCTCCCTCTTCATCTCCTTCCACCACCACTTCCACCACCACTTCCACCCTTCCCCTCGCCTCCAATTCAACTTCCCAACCCAACCATATCACTCCTATCGGACTCTTCACACCTGATCTTACCGAGATCCAGGCAAAGGCAATAATAGTACAAGCCACGAGACAAATGGAGGCCGAGAGATCAAGATGGAGGACGTGTCGAATTAGTTCATCGGCAGAAAGAGTATTGATGACGAACGGGGAAGCTAGCCCCTCCTTGAGGAGATCATTGCAGAGGTTTTTACAAAAGAGAAAGCTTCGCATTCAAACACTTTCACCCTACGCTCACTAA

Protein sequence

MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAKAIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSPYAH*

Homology

[Close]

BLAST of CSPI01G21100 vs. ExPASy Swiss-Prot
Match: Q8LBM2 (Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.1e-04
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPN----HITPI----GLFTP 60
           M+   N +LEL L P  +S  + +S TTS +   S+   QPN     IT        F+ 
Sbjct: 1   MKLQQNCDLELRLFP--TSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSS 60

Query: 61  DLTEIQAKAIIVQATRQMEAERSRWRT--CRISSSAERVLMTNGEASPSLRRSLQRFLQK 120
           D+T +QA++II  A+R+M+ + S   +     S+S     + N +A  S+++SLQ FLQK
Sbjct: 61  DVTHLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKA--SMKKSLQSFLQK 120

Query: 121 RKLRIQTLSPY 122
           RK+RIQ  SPY
Sbjct: 121 RKIRIQATSPY 127

[Close]

BLAST of CSPI01G21100 vs. ExPASy TrEMBL
Match: A0A0A0LX13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 119/123 (96.75%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60
           MEPLSNFNLELCLSPPSSSP    STTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK
Sbjct: 1   MEPLSNFNLELCLSPPSSSP----STTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60

Query: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 120
           AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP
Sbjct: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 119

Query: 121 YAH 124
           YAH
Sbjct: 121 YAH 119

[Close]

BLAST of CSPI01G21100 vs. ExPASy TrEMBL
Match: A0A1S3BA64 (protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.7e-42
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60
           ME   NFNLELCLSPPSSSPSTTT+TTT+    ASNS+SQ NHITPIG+ TPDLTEIQAK
Sbjct: 1   MEHFPNFNLELCLSPPSSSPSTTTTTTTAA--AASNSSSQHNHITPIGVPTPDLTEIQAK 60

Query: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 120
           AIIV+ATRQMEAER RW TCRISSSAERV M +GEASPS+RRSLQRFLQKRKLRIQTLSP
Sbjct: 61  AIIVEATRQMEAER-RWTTCRISSSAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLSP 120

Query: 121 YAH 124
           Y H
Sbjct: 121 YTH 120

[Close]

BLAST of CSPI01G21100 vs. ExPASy TrEMBL
Match: A0A6J1EN30 (protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 80/123 (65.04%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60
           ME + N NLELCLSPPSSSPST T+ +T        STS  NHI P  +  PD TE+QA+
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATANST--------STSCHNHIDPTRVPIPDHTELQAR 60

Query: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 120
           AIIV+AT QMEAER R  TC ISS  +RV M +G ASPS+RRSLQRFLQKRK RIQTLSP
Sbjct: 61  AIIVRATTQMEAER-RLTTCHISSPTQRVSMKSG-ASPSMRRSLQRFLQKRKHRIQTLSP 113

Query: 121 YAH 124
           Y+H
Sbjct: 121 YSH 113

[Close]

BLAST of CSPI01G21100 vs. ExPASy TrEMBL
Match: A0A6J1KQP6 (protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.8e-22
Identity = 77/123 (62.60%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60
           ME + N NLELCLSPPSSSPSTT +   +     S STS  NH T + L   DLTE+QA+
Sbjct: 1   MENILNCNLELCLSPPSSSPSTTATVAAAN----STSTSCHNHPTRVPLL--DLTELQAR 60

Query: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 120
           AIIV+A  QMEAER R  TC IS   E + M +G ASPS+RRSLQRFLQKRK RIQTLSP
Sbjct: 61  AIIVRAITQMEAER-RLTTCYISLPTEPMSMKSG-ASPSMRRSLQRFLQKRKHRIQTLSP 115

Query: 121 YAH 124
           Y+H
Sbjct: 121 YSH 115

[Close]

BLAST of CSPI01G21100 vs. ExPASy TrEMBL
Match: A0A6J1CG02 (protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.2e-12
Identity = 61/128 (47.66%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 1   MEPLSNF--NLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPI-----GLFTPD 60
           MEP      NLELCLSPP + PS+ T+  ++T       TS  +H  P+     G    D
Sbjct: 10  MEPQHTLHCNLELCLSPPPAPPSSATAAESTT-------TSTSDHHHPMVNYHHGFPVTD 69

Query: 61  LTEIQAKAIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKL 120
           LTE+QA+AII+ ATRQME  ++   TCR  S+ E+        S S++RSLQRFLQKRK 
Sbjct: 70  LTELQARAIIIGATRQMEERKT---TCRTRSAEEK--------SSSMKRSLQRFLQKRKH 119

Query: 121 RIQTLSPY 122
           RIQTL+PY
Sbjct: 130 RIQTLTPY 119

[Close]

BLAST of CSPI01G21100 vs. NCBI nr
Match: XP_004149668.1 (protein TIFY 5A [Cucumis sativus] >KGN65534.1 hypothetical protein Csa_020031 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 3.5e-53
Identity = 119/123 (96.75%), Postives = 119/123 (96.75%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60
           MEPLSNFNLELCLSPPSSSP    STTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK
Sbjct: 1   MEPLSNFNLELCLSPPSSSP----STTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60

Query: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 120
           AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP
Sbjct: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 119

Query: 121 YAH 124
           YAH
Sbjct: 121 YAH 119

[Close]

BLAST of CSPI01G21100 vs. NCBI nr
Match: XP_008444384.1 (PREDICTED: protein TIFY 5A-like [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-41
Identity = 102/123 (82.93%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60
           ME   NFNLELCLSPPSSSPSTTT+TTT+    ASNS+SQ NHITPIG+ TPDLTEIQAK
Sbjct: 1   MEHFPNFNLELCLSPPSSSPSTTTTTTTAA--AASNSSSQHNHITPIGVPTPDLTEIQAK 60

Query: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 120
           AIIV+ATRQMEAER RW TCRISSSAERV M +GEASPS+RRSLQRFLQKRKLRIQTLSP
Sbjct: 61  AIIVEATRQMEAER-RWTTCRISSSAERVWMRSGEASPSMRRSLQRFLQKRKLRIQTLSP 120

Query: 121 YAH 124
           Y H
Sbjct: 121 YTH 120

[Close]

BLAST of CSPI01G21100 vs. NCBI nr
Match: XP_023520316.1 (protein TIFY 5A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-26
Identity = 82/123 (66.67%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60
           ME + N NLELCLSPPSSSPST T+T  ST      STS  NHI P  +  PDLTE+QA+
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANST------STSCHNHIDPTRVPIPDLTELQAR 60

Query: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 120
           AIIV+AT QME ER R  TC ISS  +RV M +G ASPS+RRSLQRFLQKRK RIQTLSP
Sbjct: 61  AIIVRATTQMEVER-RLTTCHISSPKQRVSMKSG-ASPSMRRSLQRFLQKRKHRIQTLSP 115

Query: 121 YAH 124
           Y+H
Sbjct: 121 YSH 115

[Close]

BLAST of CSPI01G21100 vs. NCBI nr
Match: KAG7019513.1 (Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-26
Identity = 82/123 (66.67%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60
           ME + N NLELCLSPPSSSPST T+T  ST      STS  NHI P  +  PD TE+QA+
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATATANST------STSCHNHIDPTRVPIPDHTELQAR 60

Query: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 120
           AIIV+AT QMEAER R  TC ISS  +RV M +G ASPS+RRSLQRFLQKRK RIQTLSP
Sbjct: 61  AIIVRATTQMEAER-RLTTCHISSPTQRVSMKSG-ASPSMRRSLQRFLQKRKHRIQTLSP 115

Query: 121 YAH 124
           Y+H
Sbjct: 121 YSH 115

[Close]

BLAST of CSPI01G21100 vs. NCBI nr
Match: XP_022927150.1 (protein TIFY 5A-like [Cucurbita moschata])

HSP 1 Score: 125.9 bits (315), Expect = 2.4e-25
Identity = 80/123 (65.04%), Postives = 91/123 (73.98%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPNHITPIGLFTPDLTEIQAK 60
           ME + N NLELCLSPPSSSPST T+ +T        STS  NHI P  +  PD TE+QA+
Sbjct: 1   MENILNCNLELCLSPPSSSPSTATANST--------STSCHNHIDPTRVPIPDHTELQAR 60

Query: 61  AIIVQATRQMEAERSRWRTCRISSSAERVLMTNGEASPSLRRSLQRFLQKRKLRIQTLSP 120
           AIIV+AT QMEAER R  TC ISS  +RV M +G ASPS+RRSLQRFLQKRK RIQTLSP
Sbjct: 61  AIIVRATTQMEAER-RLTTCHISSPTQRVSMKSG-ASPSMRRSLQRFLQKRKHRIQTLSP 113

Query: 121 YAH 124
           Y+H
Sbjct: 121 YSH 113

[Close]

BLAST of CSPI01G21100 vs. TAIR 10
Match: AT1G30135.1 (jasmonate-zim-domain protein 8 )

HSP 1 Score: 45.8 bits (107), Expect = 2.9e-05
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 0


Query: 1   MEPLSNFNLELCLSPPSSSPSTTTSTTTSTLPLASNSTSQPN----HITPI----GLFTP 60
           M+   N +LEL L P  +S  + +S TTS +   S+   QPN     IT        F+ 
Sbjct: 1   MKLQQNCDLELRLFP--TSYDSDSSDTTSVVESTSSGNPQPNEESQRITIFYNGKMCFSS 60

Query: 61  DLTEIQAKAIIVQATRQMEAERSRWRT--CRISSSAERVLMTNGEASPSLRRSLQRFLQK 120
           D+T +QA++II  A+R+M+ + S   +     S+S     + N +A  S+++SLQ FLQK
Sbjct: 61  DVTHLQARSIISIASREMKTKSSSNGSDPPNKSTSFHHNQLPNPKA--SMKKSLQSFLQK 120

Query: 121 RKLRIQTLSPY 122
           RK+RIQ  SPY
Sbjct: 121 RKIRIQATSPY 127

The following BLAST results are available for this feature:

BLAST of CSPI01G21100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBM2	4.1e-04	37.40	Protein TIFY 5A OS=Arabidopsis thaliana OX=3702 GN=TIFY5A PE=1 SV=1	[more]

BLAST of CSPI01G21100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX13	1.7e-53	96.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G435790 PE=4 SV=1	[more]
A0A1S3BA64	8.7e-42	82.93	protein TIFY 5A-like OS=Cucumis melo OX=3656 GN=LOC103487726 PE=4 SV=1	[more]
A0A6J1EN30	1.1e-25	65.04	protein TIFY 5A-like OS=Cucurbita moschata OX=3662 GN=LOC111434085 PE=4 SV=1	[more]
A0A6J1KQP6	5.8e-22	62.60	protein TIFY 5A-like OS=Cucurbita maxima OX=3661 GN=LOC111495613 PE=4 SV=1	[more]
A0A6J1CG02	3.2e-12	47.66	protein TIFY 5A-like OS=Momordica charantia OX=3673 GN=LOC111010877 PE=4 SV=1	[more]

BLAST of CSPI01G21100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149668.1	3.5e-53	96.75	protein TIFY 5A [Cucumis sativus] >KGN65534.1 hypothetical protein Csa_020031 [C...	[more]
XP_008444384.1	1.8e-41	82.93	PREDICTED: protein TIFY 5A-like [Cucumis melo]	[more]
XP_023520316.1	1.6e-26	66.67	protein TIFY 5A-like [Cucurbita pepo subsp. pepo]	[more]
KAG7019513.1	2.8e-26	66.67	Protein TIFY 5A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022927150.1	2.4e-25	65.04	protein TIFY 5A-like [Cucurbita moschata]	[more]

BLAST of CSPI01G21100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30135.1	2.9e-05	37.40	jasmonate-zim-domain protein 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	Jas_motif	coord: 101..121 e-value: 1.1E-7 score: 31.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..46
None	No IPR available	PANTHER	PTHR33077:SF17	PROTEIN TIFY 5B	coord: 6..121
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	PROTEIN TIFY 4A-RELATED-RELATED	coord: 6..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G21100.1	CSPI01G21100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031347	regulation of defense response
biological_process	GO:2000022	regulation of jasmonic acid mediated signaling pathway
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005634	nucleus