CSPI01G07950 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G07950
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein PXR1
Location	Chr1: 5028278 .. 5028746 (+)
RNA-Seq Expression	CSPI01G07950
Synteny	CSPI01G07950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATAAACCTAGTATCAAAGTGGTAATTCTTTTAACGGATTTCTAGTTTTAGAGTAGTTTTGAAATGTTAATGTAAAGTTAAATGGAAAAGGATAAAGTTTAATTATAATTTAGCTAATATGAAAGTGAGTCATCTATAGGTAAAACATCAGTAACACGTTTTAGAACGGTTGGAATGTTTGACAGATTAAATAATGGGAGAAACGTCAGAAGAGAAGCACGAGGGTGAGGTCGAGAAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGGAGAAGATGAAGAGAAGAAGAAGAAGAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGATCCTACAAAACTAAGACAAAAGCTTGAGAAGCTTGAAGTCAAAATGCAGGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAATTGCTCCATGAAGCTGAACAGAATCCACCACCTTCCTCTTGA

mRNA sequence

CATAAACCTAGTATCAAAGTGGTAATTCTTTTAACGGATTTCTAGTTTTAGAGTAGTTTTGAAATGTTAATGTAAAGTTAAATGGAAAAGGATAAAGTTTAATTATAATTTAGCTAATATGAAAGTGAGTCATCTATAGGTAAAACATCAGTAACACGTTTTAGAACGGTTGGAATGTTTGACAGATTAAATAATGGGAGAAACGTCAGAAGAGAAGCACGAGGGTGAGGTCGAGAAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGGAGAAGATGAAGAGAAGAAGAAGAAGAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGATCCTACAAAACTAAGACAAAAGCTTGAGAAGCTTGAAGTCAAAATGCAGGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAATTGCTCCATGAAGCTGAACAGAATCCACCACCTTCCTCTTGA

Coding sequence (CDS)

ATGGGAGAAACGTCAGAAGAGAAGCACGAGGGTGAGGTCGAGAAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGGAGAAGATGAAGAGAAGAAGAAGAAGAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGATCCTACAAAACTAAGACAAAAGCTTGAGAAGCTTGAAGTCAAAATGCAGGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAATTGCTCCATGAAGCTGAACAGAATCCACCACCTTCCTCTTGA

Protein sequence

MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPPSS*

Homology

[Close]

BLAST of CSPI01G07950 vs. ExPASy TrEMBL
Match: A0A0A0LQQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.0e-32
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60
          MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE
Sbjct: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60

Query: 61 KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
          KLEVKMQALAVKKEEILKLLHEAEQNPPPSS
Sbjct: 61 KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 91

[Close]

BLAST of CSPI01G07950 vs. ExPASy TrEMBL
Match: A0A1S3AV24 (protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.9e-24
Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60
          MGETSEEKHEG+V   EKKEKKDKEKHG EGEDEE KKKKKKEK+PADKKDPTKLRQKLE
Sbjct: 1  MGETSEEKHEGKV---EKKEKKDKEKHG-EGEDEE-KKKKKKEKNPADKKDPTKLRQKLE 60

Query: 61 KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
          KLE KMQALAVKKEEILKLLHEAEQNPPP S
Sbjct: 61 KLEAKMQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of CSPI01G07950 vs. ExPASy TrEMBL
Match: A0A6J1C8D9 (nucleolar protein 58 OS=Momordica charantia OX=3673 GN=LOC111008918 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.5e-18
Identity = 77/100 (77.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 1   MGETSEEKHEG-EVEKKEKKEKKDKEKH--GEEGEDEEKK-KKKKKEKDPADKKDPTKLR 60
           MGE SEEKHEG EVEKKEKKEKKDKEKH  GE GE E+KK KK+KK+K+P DKKDPTKLR
Sbjct: 10  MGEPSEEKHEGEEVEKKEKKEKKDKEKHEEGEGGEGEKKKEKKEKKKKNPEDKKDPTKLR 69

Query: 61  QKLEKLEVKMQALAVKKEEILKLLHEAEQN-----PPPSS 92
           QKLEKLE KM+ LA+KKEE+LKLL EAEQN     PPPSS
Sbjct: 70  QKLEKLETKMKDLALKKEEVLKLLQEAEQNAAADPPPPSS 109

[Close]

BLAST of CSPI01G07950 vs. ExPASy TrEMBL
Match: A0A6J1K499 (protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 1   MGETSEEKHEGEVEKKEKK-----EKKDKEKHGEEGEDE--EKKKKKKKEKDPADKKDPT 60
           MG  SEEKHE +VEKKEKK     ++K KEK G++ + E  E +KK+KK KDPADKKDPT
Sbjct: 1   MGGNSEEKHEDKVEKKEKKHEEEGDEKRKEKKGKDKDKEGKEGEKKEKKPKDPADKKDPT 60

Query: 61  KLRQKLEKLEVKMQALAVKKEEILKLLHEAEQN----PPPSS 92
           KLRQKLEKLEVKMQALAVKKEE+LKLLHEAEQN    PPPSS
Sbjct: 61  KLRQKLEKLEVKMQALAVKKEEVLKLLHEAEQNAAAAPPPSS 102

[Close]

BLAST of CSPI01G07950 vs. ExPASy TrEMBL
Match: A0A6J1E7S6 (protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 72/102 (70.59%), Postives = 77/102 (75.49%), Query Frame = 0


Query: 1   MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKK-------------KKKKKEKDPA 60
           MG TSEEKHEG+VEKKEK  KKDKEKH EE +D  KK             KK+KK+KDPA
Sbjct: 27  MGGTSEEKHEGKVEKKEK--KKDKEKHEEEEDDHGKKKGKDKDKDKEGGEKKEKKKKDPA 86

Query: 61  DKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPP 90
           D KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAEQN  P
Sbjct: 87  DMKDPLKLRQKLEKLEDKMQALAVKKEEILKLIHEAEQNAAP 126

[Close]

BLAST of CSPI01G07950 vs. NCBI nr
Match: XP_008437610.1 (PREDICTED: protein PXR1 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60
          MGETSEEKHEG+V   EKKEKKDKEKHG EGEDEE KKKKKKEK+PADKKDPTKLRQKLE
Sbjct: 1  MGETSEEKHEGKV---EKKEKKDKEKHG-EGEDEE-KKKKKKEKNPADKKDPTKLRQKLE 60

Query: 61 KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
          KLE KMQALAVKKEEILKLLHEAEQNPPP S
Sbjct: 61 KLEAKMQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of CSPI01G07950 vs. NCBI nr
Match: XP_022137487.1 (nucleolar protein 58 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 77/100 (77.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 1   MGETSEEKHEG-EVEKKEKKEKKDKEKH--GEEGEDEEKK-KKKKKEKDPADKKDPTKLR 60
           MGE SEEKHEG EVEKKEKKEKKDKEKH  GE GE E+KK KK+KK+K+P DKKDPTKLR
Sbjct: 10  MGEPSEEKHEGEEVEKKEKKEKKDKEKHEEGEGGEGEKKKEKKEKKKKNPEDKKDPTKLR 69

Query: 61  QKLEKLEVKMQALAVKKEEILKLLHEAEQN-----PPPSS 92
           QKLEKLE KM+ LA+KKEE+LKLL EAEQN     PPPSS
Sbjct: 70  QKLEKLETKMKDLALKKEEVLKLLQEAEQNAAADPPPPSS 109

[Close]

BLAST of CSPI01G07950 vs. NCBI nr
Match: KAG6584261.1 (hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 73/102 (71.57%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1   MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGED-------------EEKKKKKKKEKDPA 60
           MG TSEEKHEG+VEKKEK  KKDKEKH EE ED             EE +KK+KK+KDPA
Sbjct: 1   MGGTSEEKHEGKVEKKEK--KKDKEKHEEEEEDDDHSKKKGKDKDKEEGEKKEKKKKDPA 60

Query: 61  DKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPP 90
           D KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAEQN  P
Sbjct: 61  DMKDPLKLRQKLEKLEAKMQALAVKKEEILKLIHEAEQNAAP 100

[Close]

BLAST of CSPI01G07950 vs. NCBI nr
Match: KAG7012203.1 (Protein QUIRKY, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-16
Identity = 72/98 (73.47%), Postives = 78/98 (79.59%), Query Frame = 0


Query: 1    MGETSEEKHEGEVEKKEKK-----EKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKL 60
            MG  SEEKHE +VEKKEKK     ++K KEK G++GE     KK+KK KDPADKKDPTKL
Sbjct: 1118 MGGNSEEKHEDKVEKKEKKHEEEGDEKKKEKKGKDGE-----KKEKKPKDPADKKDPTKL 1177

Query: 61   RQKLEKLEVKMQALAVKKEEILKLLHEAEQN----PPP 90
            RQKLEKLEVKMQALAVKKEEILKLLHEAEQN    PPP
Sbjct: 1178 RQKLEKLEVKMQALAVKKEEILKLLHEAEQNAAAAPPP 1210

[Close]

BLAST of CSPI01G07950 vs. NCBI nr
Match: KAG7019857.1 (hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 7.3e-16
Identity = 72/104 (69.23%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 1   MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGED---------------EEKKKKKKKEKD 60
           MG TSEEKHEG+VEKKEK  KKDKEKH EE E+               EE +KK+KK+KD
Sbjct: 1   MGGTSEEKHEGKVEKKEK--KKDKEKHEEEEEEEDDDHGKKKGKDKDKEEAEKKEKKKKD 60

Query: 61  PADKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPP 90
           PAD KDP KLRQKLEKLE KMQALAVKKEEILKL+HEAEQN  P
Sbjct: 61  PADMKDPLKLRQKLEKLEAKMQALAVKKEEILKLIHEAEQNAAP 102

[Close]

BLAST of CSPI01G07950 vs. TAIR 10
Match: AT5G62750.1 (unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae - 48; Bacteria - 2086; Metazoa - 8361; Fungi - 2243; Plants - 1040; Viruses - 210; Other Eukaryotes - 10954 (source: NCBI BLink). )

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-10
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 1   MGETSE--------EKHEGEVEKKEKKEKK-----------DKEKHGEEGEDEEKKKKK- 60
           MGET E        E+   + EK EKKEKK           DK   GEEGED+EKK KK 
Sbjct: 1   MGETEEKVKNHDNKEEEHNKAEKAEKKEKKKDKDKKDKNEDDKNGGGEEGEDQEKKSKKK 60

Query: 61  ----KKEKDPADKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
               KKEK+P DKKDP KL+ KL+K+E K+QA+ +KK+EI+KL+H+AEQ  P ++
Sbjct: 61  DKKAKKEKNPEDKKDPEKLKMKLQKIEEKIQAMVLKKDEIVKLIHDAEQAKPSTA 115

The following BLAST results are available for this feature:

BLAST of CSPI01G07950 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G07950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQQ8	6.0e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G045530 PE=4 SV=1	[more]
A0A1S3AV24	7.9e-24	90.11	protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1	[more]
A0A6J1C8D9	6.5e-18	77.00	nucleolar protein 58 OS=Momordica charantia OX=3673 GN=LOC111008918 PE=4 SV=1	[more]
A0A6J1K499	6.1e-16	71.57	protein PXR1 OS=Cucurbita maxima OX=3661 GN=LOC111489952 PE=4 SV=1	[more]
A0A6J1E7S6	6.1e-16	70.59	protein PXR1 OS=Cucurbita moschata OX=3662 GN=LOC111431428 PE=4 SV=1	[more]

BLAST of CSPI01G07950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437610.1	1.6e-23	90.11	PREDICTED: protein PXR1 [Cucumis melo]	[more]
XP_022137487.1	1.3e-17	77.00	nucleolar protein 58 [Momordica charantia]	[more]
KAG6584261.1	1.9e-16	71.57	hypothetical protein SDJN03_20193, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7012203.1	3.3e-16	73.47	Protein QUIRKY, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7019857.1	7.3e-16	69.23	hypothetical protein SDJN02_18822, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CSPI01G07950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62750.1	1.7e-10	49.57	unknown protein; Has 24942 Blast hits to 11726 proteins in 897 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR36812	NEUROFILAMENT TRIPLET M PROTEIN-LIKE PROTEIN	coord: 6..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G07950.1	CSPI01G07950.1	mRNA