Bhi12G001308 (gene) Wax gourd (B227) v1

Overview
NameBhi12G001308
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionCCHC-type domain-containing protein
Locationchr12: 48581928 .. 48582449 (+)
RNA-Seq ExpressionBhi12G001308
SyntenyBhi12G001308
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATACAATGTCTAATTTGAGACGCAGAAAGGGTGTTCGTCTTCAGAGATTTGAAGAAAGATGGGTTGGTAACGATAATTGCAAGAAAATTATTGAATCGGTTTGGCTCAATAGTGATCTGGATGTTGAAGTTGGCTTACAACAGAAATTACATATATGCATTAAAAAATTAAGGAGCTGGGATAAAGAGAGACTTAATGGCTCGCTTCGAGGAGCTATCACTAGAAAACAAAATGAGTTAAATTTTCTCAGAAATTCTCTTGTTAGGAGCACAGATTTGAATGAGAGTGCTAATTGGATTCGGGCGGAAAAGAAGCTCGAAATGCTTTTGGACGATGATGACAGATACTGGAAAATTTGTTCTTGGGAAGATTGGATTCATTGGTGCGATGGGAATACTAAATGGTTTCATCGTAAGGCCTTCGCTAGAAGGAAGACAAAGACTATTGTAGGCCTTTATGGTGAAAAATGTTCCTGGATTGAGGAAGACGCCGATTTGATGCTTTCCCAAAGATAA

mRNA sequence

ATGGCAAATACAATGTCTAATTTGAGACGCAGAAAGGGTGTTCGTCTTCAGAGATTTGAAGAAAGATGGGTTGGTAACGATAATTGCAAGAAAATTATTGAATCGGTTTGGCTCAATAGTGATCTGGATGTTGAAAGACTTAATGGCTCGCTTCGAGGAGCTATCACTAGAAAACAAAATGAGTTAAATTTTCTCAGAAATTCTCTTGTTAGGAGCACAGATTTGAATGAGAGTGCTAATTGGATTCGGGCGGAAAAGAAGCTCGAAATGCTTTTGGACGATGATGACAGATACTGGAAAATTTGTTCTTGGGAAGATTGGATTCATTGGTGCGATGGGAATACTAAATGGTTTCATCGTAAGGCCTTCGCTAGAAGGAAGACAAAGACTATTGTAGGCCTTTATGGTGAAAAATGTTCCTGGATTGAGGAAGACGCCGATTTGATGCTTTCCCAAAGATAA

Coding sequence (CDS)

ATGGCAAATACAATGTCTAATTTGAGACGCAGAAAGGGTGTTCGTCTTCAGAGATTTGAAGAAAGATGGGTTGGTAACGATAATTGCAAGAAAATTATTGAATCGGTTTGGCTCAATAGTGATCTGGATGTTGAAAGACTTAATGGCTCGCTTCGAGGAGCTATCACTAGAAAACAAAATGAGTTAAATTTTCTCAGAAATTCTCTTGTTAGGAGCACAGATTTGAATGAGAGTGCTAATTGGATTCGGGCGGAAAAGAAGCTCGAAATGCTTTTGGACGATGATGACAGATACTGGAAAATTTGTTCTTGGGAAGATTGGATTCATTGGTGCGATGGGAATACTAAATGGTTTCATCGTAAGGCCTTCGCTAGAAGGAAGACAAAGACTATTGTAGGCCTTTATGGTGAAAAATGTTCCTGGATTGAGGAAGACGCCGATTTGATGCTTTCCCAAAGATAA

Protein sequence

MANTMSNLRRRKGVRLQRFEERWVGNDNCKKIIESVWLNSDLDVERLNGSLRGAITRKQNELNFLRNSLVRSTDLNESANWIRAEKKLEMLLDDDDRYWKICSWEDWIHWCDGNTKWFHRKAFARRKTKTIVGLYGEKCSWIEEDADLMLSQR
Homology
BLAST of Bhi12G001308 vs. NCBI nr
Match: PON78325.1 (Endonuclease/exonuclease/phosphatase [Parasponia andersonii])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-10
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 0

Query: 19  FEERWVGNDNCKKIIESVW-----------LNSDLD--VERLNGSLRGAITRKQNELNFL 78
           FEE WVG + C  IIE VW           +N  L+   ++L    +     +Q +L+ L
Sbjct: 94  FEELWVGQNECASIIEKVWDRNTEANTITSVNKKLENCADQLRAWSKLKYGTQQKDLDKL 153

Query: 79  RNSL---VRSTDLNESANWIR-AEKKLEMLLDDDDRYWKICSWEDWIHWCDGNTKWFHRK 138
           R+ L    R+  L ++A  ++  E K+  +L D + YWK  SW  W+ W D NT++FH K
Sbjct: 154 RSELGLIQRNLSLPDAAERLKVTEDKINKILQDQEIYWKQRSWASWLKWRDRNTRFFHCK 213

Query: 139 AFARRKTKTIVGLYGEKCSWIEEDADL 149
           A  R+    I GL      W +E  ++
Sbjct: 214 ASQRQSRNKIWGLIDNNGIWRDEKHEI 240

BLAST of Bhi12G001308 vs. NCBI nr
Match: XP_023878301.1 (uncharacterized protein LOC111990748 [Quercus suber])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-10
Identity = 46/162 (28.40%), Postives = 84/162 (51.85%), Query Frame = 0

Query: 4   TMSNLRRRKGVRLQRFEERWVGNDNCKKIIESVW-----------LNSDL-----DVERL 63
           T +++R R  V+   FE +W   ++CK IIE+ W           ++ +L     ++ + 
Sbjct: 188 TDNSIRHRPRVKRFHFEAQWTKREDCKAIIEASWGFGVDLSTPEGISENLRICAVELSKW 247

Query: 64  NGSLRGAITRK-QNELNFLRNSLVRSTDLNESANWIRAEKKLEMLLDDDDRYWKICSWED 123
           + ++ G I +K Q++ + L    +R  D + S    R  +++  LLDD++ YW   +   
Sbjct: 248 SSTIYGQIPKKIQDKRSRLNTLAMRELDEDLSLEINRLREEINALLDDEETYWGQRAKAH 307

Query: 124 WIHWCDGNTKWFHRKAFARRKTKTIVGLYGEKCSWIEEDADL 149
           W+   D NTK+FH +A  RRK  TIVG++ E+  W + +  +
Sbjct: 308 WLKEGDRNTKFFHAQASERRKQNTIVGIWDEQGRWCDNEESI 349

BLAST of Bhi12G001308 vs. NCBI nr
Match: XP_030502373.1 (uncharacterized protein LOC115717527 [Cannabis sativa])

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-10
Identity = 55/164 (33.54%), Postives = 75/164 (45.73%), Query Frame = 0

Query: 6   SNLRRRKGVRLQRFEERWVGNDNCKKIIESVWLNSDL--DVERLNGSLRGAITR------ 65
           S  RR  G R   +E  W  ND C KII  VW +  +   ++ LN  L     R      
Sbjct: 142 SLFRRNWGSRF-HYEHAWADNDECLKIINEVWGDKVMGRPLDNLNHLLSKCGRRLYEWNI 201

Query: 66  KQNELNFLRNSLVRSTDLNESANWI-------------RAEKKLEMLLDDDDRYWKICSW 125
           KQ + NF      RS +L E  +W+             + EK L  + +  + YW+  S 
Sbjct: 202 KQKKANF-----ARSKELKEKIDWLSKSPNMMDWIARQKLEKDLNCVEEKREMYWRQRSR 261

Query: 126 EDWIHWCDGNTKWFHRKAFARRKTKTIVGLYGEKCSWIEEDADL 149
             W+   D NTK+FH KA ARRK  TI+GLY ++  W   + DL
Sbjct: 262 ALWLKHGDQNTKFFHFKASARRKKNTILGLYDDRGHWRTSEKDL 299

BLAST of Bhi12G001308 vs. NCBI nr
Match: XP_030502370.1 (uncharacterized protein LOC115717524 [Cannabis sativa])

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-10
Identity = 55/164 (33.54%), Postives = 75/164 (45.73%), Query Frame = 0

Query: 6   SNLRRRKGVRLQRFEERWVGNDNCKKIIESVWLNSDL--DVERLNGSLRGAITR------ 65
           S  RR  G R   +E  W  ND C KII  VW +  +   ++ LN  L     R      
Sbjct: 142 SLFRRNWGSRF-HYEHAWADNDECLKIINEVWGDKVMGRPLDNLNHLLSKCGRRLYEWNI 201

Query: 66  KQNELNFLRNSLVRSTDLNESANWI-------------RAEKKLEMLLDDDDRYWKICSW 125
           KQ + NF      RS +L E  +W+             + EK L  + +  + YW+  S 
Sbjct: 202 KQKKANF-----ARSKELKEKIDWLSKSPNMMDWIARQKLEKDLNCVEEKREMYWRQRSR 261

Query: 126 EDWIHWCDGNTKWFHRKAFARRKTKTIVGLYGEKCSWIEEDADL 149
             W+   D NTK+FH KA ARRK  TI+GLY ++  W   + DL
Sbjct: 262 ALWLKHGDQNTKFFHFKASARRKKNTILGLYDDRGHWRTSEKDL 299

BLAST of Bhi12G001308 vs. NCBI nr
Match: XP_040998143.1 (uncharacterized protein LOC121244182 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-09
Identity = 53/161 (32.92%), Postives = 76/161 (47.20%), Query Frame = 0

Query: 4   TMSNLR-RRKGVRLQRFEERWVGNDNCKKIIESVWLNSD----------------LDVER 63
           T SN R RRKG RL RFE  WVG   C  IIE VW   +                +D+ +
Sbjct: 181 TWSNRRERRKGRRLLRFEAIWVGEKECSSIIEKVWQQVEGSASLICVIEGISACAIDLGK 240

Query: 64  LN----GSLRGAITRKQNELNFLRNSLVRSTDLNESANWIRAEKKLEMLLDDDDRYWKIC 123
            N    G ++  +T     L FL+ S    T L+E +   +A ++++  L  D+  WK  
Sbjct: 241 WNQNSFGHVQKELTSANRRLKFLQESDPYLTILHEHS---KAREEVQKWLQRDELMWKQR 300

Query: 124 SWEDWIHWCDGNTKWFHRKAFARRKTKTIVGLYGEKCSWIE 144
           S   W+   D N+K+FH KA  RR+   IV L  +  +W +
Sbjct: 301 SRVLWLREGDSNSKFFHSKASTRRRRNNIVQLQDDSGNWFK 338

BLAST of Bhi12G001308 vs. ExPASy TrEMBL
Match: A0A803PYI0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.0e-13
Identity = 50/142 (35.21%), Postives = 73/142 (51.41%), Query Frame = 0

Query: 19  FEERWVGNDNCKKIIESVWLNSDL-----DVERLNGSLRGAI----TRKQNELN----FL 78
           FEE W   D CK+I+E  W   D+     D +R  G +  A+     +K+  LN     L
Sbjct: 664 FEEAWCEEDQCKEIVEKNWREWDVVISGGDYKRKTGQVGRALDSWNRKKKKVLNQKIKKL 723

Query: 79  RNSLVRSTDLNESANWI---RAEKKLEMLLDDDDRYWKICSWEDWIHWCDGNTKWFHRKA 138
           + +L   +  ++   W+   + EK+L  +L+ D++YW  CS   W+ W D NTK+FHRKA
Sbjct: 724 KTTLTELSSNSDPGAWVEVKKIEKQLNAVLEKDEKYWCQCSRALWLKWGDLNTKFFHRKA 783

Query: 139 FARRKTKTIVGLYGEKCSWIEE 145
            ARRK   I GL  +   W  E
Sbjct: 784 SARRKKNAIKGLMDDMGVWHSE 805

BLAST of Bhi12G001308 vs. ExPASy TrEMBL
Match: A0A803PI64 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-12
Identity = 49/142 (34.51%), Postives = 74/142 (52.11%), Query Frame = 0

Query: 19  FEERWVGNDNCKKIIESVWLNSDL-----DVERLNGSLRGAI----TRKQNELN----FL 78
           FEE W   D CK+I+E  W   D+     D +R  G +  A+     +K+  LN     L
Sbjct: 490 FEEAWCEEDQCKEIVEKNWREWDVVISGGDYKRKTGEVGRALDSWNRKKKKVLNQKIKKL 549

Query: 79  RNSLVRSTDLNESANWI---RAEKKLEMLLDDDDRYWKICSWEDWIHWCDGNTKWFHRKA 138
           + +L+  +  ++   W+   + EK+L  +L+ D++YW+  S   W+ W D NTK+FHRKA
Sbjct: 550 KTTLIELSSSSDPGAWVEVKKIEKQLNAVLEKDEKYWRQRSRALWLKWGDLNTKFFHRKA 609

Query: 139 FARRKTKTIVGLYGEKCSWIEE 145
            ARRK   I GL  +   W  E
Sbjct: 610 SARRKKNAIKGLMDDIGVWHSE 631

BLAST of Bhi12G001308 vs. ExPASy TrEMBL
Match: A0A803Q1K6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 8.8e-12
Identity = 50/136 (36.76%), Postives = 66/136 (48.53%), Query Frame = 0

Query: 11  RKGVRLQR--FEERWVGNDNCKKIIESVWLNSDLDVERLNGSLRGAITRKQNELNFLRNS 70
           RK  +L R  FEE W   + CK+I+E  W   D+ V        G   RK  +     N 
Sbjct: 703 RKKAKLSRFHFEEAWCEEEQCKEIVEKQWSEWDIVVS------GGDFKRKTGQATL--NV 762

Query: 71  LVRSTDLNESANWIRAEKKLEMLLDDDDRYWKICSWEDWIHWCDGNTKWFHRKAFARRKT 130
           L  S+D        + EK+L  +L+ D+ YW+  S   W+ W D NTK+FHRKA ARRK 
Sbjct: 763 LSASSDPGAWMEVKKIEKQLNAVLEKDEMYWRQRSRALWLKWGDSNTKYFHRKASARRKK 822

Query: 131 KTIVGLYGEKCSWIEE 145
             I GL      W +E
Sbjct: 823 NAIKGLMDSMGVWHQE 830

BLAST of Bhi12G001308 vs. ExPASy TrEMBL
Match: A0A2P5DYE7 (Endonuclease/exonuclease/phosphatase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_019630 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.7e-10
Identity = 47/147 (31.97%), Postives = 72/147 (48.98%), Query Frame = 0

Query: 19  FEERWVGNDNCKKIIESVW-----------LNSDLD--VERLNGSLRGAITRKQNELNFL 78
           FEE WVG + C  IIE VW           +N  L+   ++L    +     +Q +L+ L
Sbjct: 94  FEELWVGQNECASIIEKVWDRNTEANTITSVNKKLENCADQLRAWSKLKYGTQQKDLDKL 153

Query: 79  RNSL---VRSTDLNESANWIR-AEKKLEMLLDDDDRYWKICSWEDWIHWCDGNTKWFHRK 138
           R+ L    R+  L ++A  ++  E K+  +L D + YWK  SW  W+ W D NT++FH K
Sbjct: 154 RSELGLIQRNLSLPDAAERLKVTEDKINKILQDQEIYWKQRSWASWLKWRDRNTRFFHCK 213

Query: 139 AFARRKTKTIVGLYGEKCSWIEEDADL 149
           A  R+    I GL      W +E  ++
Sbjct: 214 ASQRQSRNKIWGLIDNNGIWRDEKHEI 240

BLAST of Bhi12G001308 vs. ExPASy TrEMBL
Match: A0A803PQ16 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.2e-10
Identity = 55/164 (33.54%), Postives = 75/164 (45.73%), Query Frame = 0

Query: 6   SNLRRRKGVRLQRFEERWVGNDNCKKIIESVWLNSDL--DVERLNGSLRGAITR------ 65
           S  RR  G R   +E  W  ND C KII  VW +  +   ++ LN  L     R      
Sbjct: 424 SLFRRNWGSRF-HYEHAWADNDECLKIINEVWGDKVMGRPLDNLNHLLSKCGRRLYEWNI 483

Query: 66  KQNELNFLRNSLVRSTDLNESANWI-------------RAEKKLEMLLDDDDRYWKICSW 125
           KQ + NF      RS +L E  +W+             + EK L  + +  + YW+  S 
Sbjct: 484 KQKKANF-----ARSKELKEKIDWLSKSPNMMDWIARQKLEKDLNCVEEKREMYWRQRSR 543

Query: 126 EDWIHWCDGNTKWFHRKAFARRKTKTIVGLYGEKCSWIEEDADL 149
             W+   D NTK+FH KA ARRK  TI+GLY ++  W   + DL
Sbjct: 544 ALWLKHGDQNTKFFHFKASARRKKNTILGLYDDRGHWRTSEKDL 581

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
PON78325.13.4e-1031.97Endonuclease/exonuclease/phosphatase [Parasponia andersonii][more]
XP_023878301.13.4e-1028.40uncharacterized protein LOC111990748 [Quercus suber][more]
XP_030502373.14.5e-1033.54uncharacterized protein LOC115717527 [Cannabis sativa][more]
XP_030502370.14.5e-1033.54uncharacterized protein LOC115717524 [Cannabis sativa][more]
XP_040998143.12.9e-0932.92uncharacterized protein LOC121244182 [Juglans microcarpa x Juglans regia][more]
Match NameE-valueIdentityDescription
A0A803PYI08.0e-1335.21Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PI643.0e-1234.51Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q1K68.8e-1236.76Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A2P5DYE71.7e-1031.97Endonuclease/exonuclease/phosphatase OS=Parasponia andersonii OX=3476 GN=PanWU01... [more]
A0A803PQ162.2e-1033.54Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M001308Bhi12M001308mRNA