Bhi12G000914 (gene) Wax gourd (B227) v1

Overview


Name	Bhi12G000914
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr12: 31747429 .. 31747811 (+)
RNA-Seq Expression	Bhi12G000914
Synteny	Bhi12G000914

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGGACGGGAAGTGGTGTTTCCAGTGGCGCGACCGGTGAGTAACGCGGTAAGAACCTGCCCTTGTGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTACGCTTGAGGAGCAAAAAGGAGGAAATCCGCCGAGGAGGGGCTCGCGTCTGATTAGCTTAGTTGGTGAGGCAATAGCTTACCAAGCGATGATCAGTAGCTGGTCCGACGAGGATGATCAGCCACACTGGGACTGGAGACCCGGCCCAGACTCCTAAGGGAGGGCAGCAGTGGGGGAAATTTTCCGCAAATGGGCGAAAAGCTGAGGAGCATGCCCGCGTGAGAGGAGAGGCCTCGGGTCGTGAAACTTCTTTTCCGGAAGAAGAAACAATGACCG

mRNA sequence

ATGCTCGGACGGGAAGTGGTGTTTCCAGTGGCGCGACCGGTGAGTAACGCGGTAAGAACCTGCCCTTGTGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTACGCTTGAGGAGCAAAAAGGAGGAAATCCGCCGAGGAGGGGCTCGCGTCTGATTAGCTTAGTTGTAGCTGGTCCGACGAGGATGATCAGCCACACTGGGACTGGAGACCCGGCCCAGACTCCTAAGGGAGGGCAGCAGTGGGGGAAATTTTCCGCAAATGGGCGAAAAGCTGAGGAGCATGCCCGCGTGAGAGGAGAGGCCTCGGGTCGTGAAACTTCTTTTCCGGAAGAAGAAACAATGACCG

Coding sequence (CDS)

ATGCTCGGACGGGAAGTGGTGTTTCCAGTGGCGCGACCGGTGAGTAACGCGGTAAGAACCTGCCCTTGTGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTACGCTTGAGGAGCAAAAAGGAGGAAATCCGCCGAGGAGGGGCTCGCGTCTGATTAGCTTAGTTGTAGCTGGTCCGACGAGGATGATCAGCCACACTGGGACTGGAGACCCGGCCCAGACTCCTAAGGGAGGGCAGCAGTGGGGGAAATTTTCCGCAAATGGGCGAAAAGCTGAGGAGCATGCCCGCGTGAGAGGAGAGGCCTCGGGTCGTGAAACTTCTTTTCCGGAAGAAGAAACAATGACCG

Protein sequence

MLGREVVFPVARPVSNAVRTCPCEGNNSWKRLLIPRTLEEQKGGNPPRRGSRLISLVVAGPTRMISHTGTGDPAQTPKGGQQWGKFSANGRKAEEHARVRGEASGRETSFPEEETMT

Homology

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BLAST of Bhi12G000914 vs. NCBI nr
Match: XP_040944804.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC107907897 [Gossypium hirsutum])

HSP 1 Score: 57.0 bits (136), Expect = 1.3e-04
Identity = 44/101 (43.56%), Postives = 46/101 (45.54%), Query Frame = 0


Query: 2   LGREVVFPVARPVSNAVRTCPCEGNNSWKRLLIPRTLEEQKGGNPPRRGSRLISLVVAGP 61
           +GREVVFPV              GNNSWKRLLIPR L   K  NPP  G     LV    
Sbjct: 43  VGREVVFPV--------------GNNSWKRLLIPRRL-RSKRRNPPEEGLASDXLV---- 102

Query: 62  TRMISHTGTGDPAQTPKGGQQWGKFSANGRKAEEHARVRGE 103
                     D AQTP GG   G+FSA G    E  RV  E
Sbjct: 103 ----------DTAQTPTGGSS-GEFSAMGESLTEQCRVEVE 113

The following BLAST results are available for this feature:

BLAST of Bhi12G000914 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G000914 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi12G000914 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_040944804.1	1.3e-04	43.56	LOW QUALITY PROTEIN: uncharacterized protein LOC107907897 [Gossypium hirsutum]	[more]

BLAST of Bhi12G000914 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi12M000914	Bhi12M000914	mRNA