Bhi12G000381 (gene) Wax gourd (B227) v1

Overview
NameBhi12G000381
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr12: 13665029 .. 13665295 (-)
RNA-Seq ExpressionBhi12G000381
SyntenyBhi12G000381
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCCCATCCAGAGATCACTCTTTCGATGAAACAATTTATTCTTCAACTCCACTCAAAGTAATCAATCCAAGAAGTAAAATCACTACTATGGAGCTTGATGAAAGCAATTTCCTCTCCTGGAAACTTCAAATTACCATAACTTTGAGAGGTTATGGACTCGAAAAGTTTATCAATAGCGAAAGTTCTGCTCCATCAAAGTGCATTACGACTGAATTGGCATCTTCCTCCACAAGAACACCAAATCCTGAGTATGTTTTCTGG

mRNA sequence

ATGGATTCCCCATCCAGAGATCACTCTTTCGATGAAACAATTTATTCTTCAACTCCACTCAAAGTAATCAATCCAAGAAGTAAAATCACTACTATGGAGCTTGATGAAAGCAATTTCCTCTCCTGGAAACTTCAAATTACCATAACTTTGAGAGGTTATGGACTCGAAAAGTTTATCAATAGCGAAAGTTCTGCTCCATCAAAGTGCATTACGACTGAATTGGCATCTTCCTCCACAAGAACACCAAATCCTGAGTATGTTTTCTGG

Coding sequence (CDS)

ATGGATTCCCCATCCAGAGATCACTCTTTCGATGAAACAATTTATTCTTCAACTCCACTCAAAGTAATCAATCCAAGAAGTAAAATCACTACTATGGAGCTTGATGAAAGCAATTTCCTCTCCTGGAAACTTCAAATTACCATAACTTTGAGAGGTTATGGACTCGAAAAGTTTATCAATAGCGAAAGTTCTGCTCCATCAAAGTGCATTACGACTGAATTGGCATCTTCCTCCACAAGAACACCAAATCCTGAGTATGTTTTCTGG

Protein sequence

MDSPSRDHSFDETIYSSTPLKVINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFINSESSAPSKCITTELASSSTRTPNPEYVFW
Homology
BLAST of Bhi12G000381 vs. NCBI nr
Match: XP_022159146.1 (uncharacterized protein LOC111025572 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 32/68 (47.06%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 22 VINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFINSESSAPSKCITTELASSSTRT 81
          ++NP +KI+T++L++ NFL W+LQIT  L+G+GL KFI+ E+  PS+ + +   SSS  +
Sbjct: 19 IVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSEFVQSADESSSVPS 78

Query: 82 PNPEYVFW 90
          PNPE++ W
Sbjct: 79 PNPEFINW 86

BLAST of Bhi12G000381 vs. NCBI nr
Match: KAA0035482.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK31043.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 7.1e-08
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 12 ETIYSSTPL-KVINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFINSESSAPSKCI 71
          E   +S+P+ ++    +KI+ ++L ++NFL WK QI   L  Y LE  + SES APSK +
Sbjct: 11 ENTKASSPINQIFGSGNKISLVKLSDNNFLLWKFQILTALEAYDLENILESESEAPSKYL 70

Query: 72 TT--ELASSSTRTPNPEYVFW 90
          T+    ++S+TRTPNPEY  W
Sbjct: 71 TSIGISSTSATRTPNPEYKVW 91

BLAST of Bhi12G000381 vs. NCBI nr
Match: KAA0053143.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 17 STPLKVINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFINSESSAPSKCITT--EL 76
          +T + +    +KI+ ++L + NFL WK QI   L  Y LE F  SE   PSK +T+    
Sbjct: 12 NTEVSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEPPSKYLTSTGSS 71

Query: 77 ASSSTRTPNPEYVFW 90
          ++S+TRTPNPEY  W
Sbjct: 72 STSATRTPNPEYKVW 86

BLAST of Bhi12G000381 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-07
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0

Query: 1  MDSPSRDHSFDETIYSSTPLKVINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFIN 60
          M S S     + T  SS   ++    +KI+ ++L + NFL WK QI   L  Y LE F+ 
Sbjct: 1  MSSTSSLLGVENTEASSPINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLE 60

Query: 61 SESSAPSKCI--TTELASSSTRTPNPEYVFW 90
          SES  PSK +  T   ++S+TRTPNP Y  W
Sbjct: 61 SESEPPSKYLISTGSSSASATRTPNPTYKVW 91

BLAST of Bhi12G000381 vs. NCBI nr
Match: TYK18917.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 2.7e-07
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0

Query: 1  MDSPSRDHSFDETIYSSTPLKVINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFIN 60
          M S S     + T  SS   ++    +KI+ ++L + NFL WK QI   L  Y LE F+ 
Sbjct: 1  MSSTSSLLGVENTEASSPINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLE 60

Query: 61 SESSAPSKCI--TTELASSSTRTPNPEYVFW 90
          SES  PSK +  T   ++S+TRTPNP Y  W
Sbjct: 61 SESEPPSKYLISTGSSSASATRTPNPTYKVW 91

BLAST of Bhi12G000381 vs. ExPASy TrEMBL
Match: A0A6J1E314 (uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025572 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 32/68 (47.06%), Postives = 51/68 (75.00%), Query Frame = 0

Query: 22 VINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFINSESSAPSKCITTELASSSTRT 81
          ++NP +KI+T++L++ NFL W+LQIT  L+G+GL KFI+ E+  PS+ + +   SSS  +
Sbjct: 19 IVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSEFVQSADESSSVPS 78

Query: 82 PNPEYVFW 90
          PNPE++ W
Sbjct: 79 PNPEFINW 86

BLAST of Bhi12G000381 vs. ExPASy TrEMBL
Match: A0A5D3E4L1 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002990 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.5e-08
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 12 ETIYSSTPL-KVINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFINSESSAPSKCI 71
          E   +S+P+ ++    +KI+ ++L ++NFL WK QI   L  Y LE  + SES APSK +
Sbjct: 11 ENTKASSPINQIFGSGNKISLVKLSDNNFLLWKFQILTALEAYDLENILESESEAPSKYL 70

Query: 72 TT--ELASSSTRTPNPEYVFW 90
          T+    ++S+TRTPNPEY  W
Sbjct: 71 TSIGISSTSATRTPNPEYKVW 91

BLAST of Bhi12G000381 vs. ExPASy TrEMBL
Match: A0A5A7UB21 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1486G00150 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-07
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 17 STPLKVINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFINSESSAPSKCITT--EL 76
          +T + +    +KI+ ++L + NFL WK QI   L  Y LE F  SE   PSK +T+    
Sbjct: 12 NTEVSIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFFESELEPPSKYLTSTGSS 71

Query: 77 ASSSTRTPNPEYVFW 90
          ++S+TRTPNPEY  W
Sbjct: 72 STSATRTPNPEYKVW 86

BLAST of Bhi12G000381 vs. ExPASy TrEMBL
Match: A0A5D3D5T2 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001330 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0

Query: 1  MDSPSRDHSFDETIYSSTPLKVINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFIN 60
          M S S     + T  SS   ++    +KI+ ++L + NFL WK QI   L  Y LE F+ 
Sbjct: 1  MSSTSSLLGVENTEASSPINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLE 60

Query: 61 SESSAPSKCI--TTELASSSTRTPNPEYVFW 90
          SES  PSK +  T   ++S+TRTPNP Y  W
Sbjct: 61 SESEPPSKYLISTGSSSASATRTPNPTYKVW 91

BLAST of Bhi12G000381 vs. ExPASy TrEMBL
Match: A0A5A7VGJ8 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00160 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 0

Query: 1  MDSPSRDHSFDETIYSSTPLKVINPRSKITTMELDESNFLSWKLQITITLRGYGLEKFIN 60
          M S S     + T  SS   ++    +KI+ ++L + NFL WK QI   L  Y LE F+ 
Sbjct: 1  MSSTSSLLGVENTEASSPINQIFGSSNKISLVKLSDDNFLLWKFQILTALEAYDLENFLE 60

Query: 61 SESSAPSKCI--TTELASSSTRTPNPEYVFW 90
          SES  PSK +  T   ++S+TRTPNP Y  W
Sbjct: 61 SESEPPSKYLISTGSSSASATRTPNPTYKVW 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022159146.14.5e-1047.06uncharacterized protein LOC111025572 [Momordica charantia][more]
KAA0035482.17.1e-0843.21UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK31043.1 UBN2_3 d... [more]
KAA0053143.12.1e-0742.67keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa][more]
KAA0067213.12.7e-0740.66keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa][more]
TYK18917.12.7e-0740.66keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A6J1E3142.2e-1047.06uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5D3E4L13.5e-0843.21UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7UB211.0e-0742.67Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3D5T21.3e-0740.66Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7VGJ81.3e-0740.66Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi12M000381Bhi12M000381mRNA