Bhi11G000172 (gene) Wax gourd (B227) v1

Overview
NameBhi11G000172
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Locationchr11: 4448700 .. 4448852 (+)
RNA-Seq ExpressionBhi11G000172
SyntenyBhi11G000172
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAATGAAGAAGCATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGTGTTGAATTCTAAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAGCCTCCTATTCACAATGAAAAACCCTAG

mRNA sequence

GGAATGAAGAAGCATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGTGTTGAATTCTAAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAGCCTCCTATTCACAATGAAAAACCCTAG

Coding sequence (CDS)

GGAATGAAGAAGCATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGTGTTGAATTCTAAGGAAAATGAGGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGAAAGCCTCCTATTCACAATGAAAAACCCTAG

Protein sequence

GMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Homology
BLAST of Bhi11G000172 vs. TAIR 10
Match: AT4G16515.1 (Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9). )

HSP 1 Score: 48.5 bits (114), Expect = 1.8e-06
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 26 EVGEDMVVMDYAQPHRKPPIHNEK 50
          E GE++VVMDY QPHRKPPIHNEK
Sbjct: 62 ETGEEVVVMDYPQPHRKPPIHNEK 85

BLAST of Bhi11G000172 vs. ExPASy Swiss-Prot
Match: Q93VK8 (Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.5e-05
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 26 EVGEDMVVMDYAQPHRKPPIHNEK 50
          E GE++VVMDY QPHRKPPIHNEK
Sbjct: 62 ETGEEVVVMDYPQPHRKPPIHNEK 85

BLAST of Bhi11G000172 vs. NCBI nr
Match: XP_038905997.1 (uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1   GMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 51
           GMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Sbjct: 75  GMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 124

BLAST of Bhi11G000172 vs. NCBI nr
Match: XP_038905996.1 (uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 1   GMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 51
           GMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Sbjct: 76  GMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 125

BLAST of Bhi11G000172 vs. NCBI nr
Match: XP_011650407.1 (uncharacterized protein LOC105434783 [Cucumis sativus] >KGN55873.1 hypothetical protein Csa_010787 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-18
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0

Query: 1   GMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 51
           GMK+ GSRLVMEFPMKEKV+NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Sbjct: 81  GMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 130

BLAST of Bhi11G000172 vs. NCBI nr
Match: XP_022154042.1 (uncharacterized protein LOC111021396 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1   GMKKHGSRLVMEFPM--KEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 51
           GMKKH  RL MEF M  KEK+++ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Sbjct: 76  GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 126

BLAST of Bhi11G000172 vs. NCBI nr
Match: KAG7028383.1 (Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.9 bits (180), Expect = 4.3e-10
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 0

Query: 1   GMKKHGSRLVMEFPMK--------EKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 51
           GMKK   RL ME P++        +KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Sbjct: 73  GMKKL-RRLAMELPVRDIDRDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNQKP 129

BLAST of Bhi11G000172 vs. ExPASy TrEMBL
Match: A0A0A0L298 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.1e-18
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 0

Query: 1   GMKKHGSRLVMEFPMKEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 51
           GMK+ GSRLVMEFPMKEKV+NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Sbjct: 81  GMKRDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 130

BLAST of Bhi11G000172 vs. ExPASy TrEMBL
Match: A0A6J1DKL1 (uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021396 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.4e-12
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 1   GMKKHGSRLVMEFPM--KEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 51
           GMKKH  RL MEF M  KEK+++ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Sbjct: 76  GMKKH-KRLAMEFSMKEKEKLMSYEENEVGEDMVVMDYAQPHRKPPIHNKKP 126

BLAST of Bhi11G000172 vs. ExPASy TrEMBL
Match: A0A6J1KZM9 (uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-10
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 0

Query: 1   GMKKHGSRLVMEFPMK----------EKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 51
           GMKK   RL ME P++          +KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Sbjct: 73  GMKKL-RRLAMELPVRDRDRDKDKDIDKVVNSEENEVGEDMVVMDYAQPHRKPPIHNRKP 131

BLAST of Bhi11G000172 vs. ExPASy TrEMBL
Match: A0A6P6TWI6 (uncharacterized protein LOC113705039 OS=Coffea arabica OX=13443 GN=LOC113705039 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.1e-06
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 7   SRLVMEFP--MKEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 51
           +R +ME P    E+ ++S EN+ GED+VVMDYAQPHRKPPIHN +P
Sbjct: 148 ARSIMESPTAKAEETVDSMENDKGEDIVVMDYAQPHRKPPIHNRRP 193

BLAST of Bhi11G000172 vs. ExPASy TrEMBL
Match: A0A6S7NRQ9 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS30448 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.1e-06
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 4   KHGSRLVMEFPM---KEKVLNSKENEVGEDMVVMDYAQPHRKPPIHNEKP 51
           K+ +RL ME      KEK+ NSK+N V ED+ VMDYAQPHRKPPIHN +P
Sbjct: 96  KNRARLTMESKQKDSKEKINNSKDNSVTEDVGVMDYAQPHRKPPIHNLQP 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT4G16515.11.8e-0683.33Encodes a root meristem growth factor (RGF). Belongs to a family of functionall... [more]
Match NameE-valueIdentityDescription
Q93VK82.5e-0583.33Protein GOLVEN 1 OS=Arabidopsis thaliana OX=3702 GN=GLV1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_038905997.11.0e-19100.00uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida][more]
XP_038905996.11.0e-19100.00uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida][more]
XP_011650407.14.3e-1894.00uncharacterized protein LOC105434783 [Cucumis sativus] >KGN55873.1 hypothetical ... [more]
XP_022154042.11.7e-1176.92uncharacterized protein LOC111021396 [Momordica charantia][more]
KAG7028383.14.3e-1067.24Root meristem growth factor 6 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
A0A0A0L2982.1e-1894.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G020610 PE=4 SV=1[more]
A0A6J1DKL18.4e-1276.92uncharacterized protein LOC111021396 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1KZM96.0e-1065.00uncharacterized protein LOC111498521 OS=Cucurbita maxima OX=3661 GN=LOC111498521... [more]
A0A6P6TWI63.1e-0660.87uncharacterized protein LOC113705039 OS=Coffea arabica OX=13443 GN=LOC113705039 ... [more]
A0A6S7NRQ93.1e-0662.00Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS30448 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34961TRANSMEMBRANE PROTEINcoord: 2..50
NoneNo IPR availablePANTHERPTHR34961:SF7SUBFAMILY NOT NAMEDcoord: 2..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi11M000172Bhi11M000172mRNA