Bhi11G000108 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G000108
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	homeobox protein knotted-1-like 1 isoform X1
Location	chr11: 2763851 .. 2764619 (+)
RNA-Seq Expression	Bhi11G000108
Synteny	Bhi11G000108

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGTTTTACATGCTTAACAACTTTATTATAACCTCAAATTCTAATGGTGTTGTTGGAAGTGAAGCCATTGCAAGCACCAGTTGTGGAGGGATTCATGAAGCTTTAATGGTGGATGATGGTATGCTTCACCTTGAAGTCGAGGCCACTACTGATTTGAACTTGTCTGACATGATCAAAACTCAAACTGTCAACCATCCCCTTTATCCAAAACTGGTTTCTGCTTACATTGAATACCAAAAAGTTGATAAATTTTTTTTCCCTTTTACCTCTCTCTTTATGAATCATATGTTTTTCAATGTGTTTTAGATGCAAGGGATAATTGAAGGTGGAAAGTAAGTATTATATCACACAACATTCTCCTAAAATGGGATATTGCATATGAATCAGTAGGACCTTGAACTAAGCAAACCAAACCAATCAAGATTGATTCTTTCAGTTTGACCATTTAGATTAGCGAAAACTCAGACAGTTTTAAACATGTGAAAGTTTGATCTATATTTTTAGTTAGGTTTTTATTTGAGTTATAATTTATTTCAAAGTTTTCATGAGAGACTTCAACACTCGCAATCAGGAACACAATGAACATTCATTTTTAAGTGGCAGTGTTAATTGTTTATCTTTTTAAACATGAACAGTTGTCCCGACATGCTGATTTTAACTTTACTTCTGATATTACTGTAGGAAAGAGGTCATGATCCTTATATACTTCTTCTTGGTGCGTAAACCGCTTTTGAGTAGCGAAGAAAATAACATTGACGAGTAA

mRNA sequence

ATGGAAGAGTTTTACATGCTTAACAACTTTATTATAACCTCAAATTCTAATGGTGTTGTTGGAAGTGAAGCCATTGCAAGCACCAGTTGTGGAGGGATTCATGAAGCTTTAATGGTGGATGATGGTATGCTTCACCTTGAAGTCGAGGCCACTACTGATTTGAACTTGTCTGACATGATCAAAACTCAAACTGTCAACCATCCCCTTTATCCAAAACTGATGCAAGGGATAATTGAAGGTGGAAAGAAAGAGGTCATGATCCTTATATACTTCTTCTTGGTGCGTAAACCGCTTTTGAGTAGCGAAGAAAATAACATTGACGAGTAA

Coding sequence (CDS)

ATGGAAGAGTTTTACATGCTTAACAACTTTATTATAACCTCAAATTCTAATGGTGTTGTTGGAAGTGAAGCCATTGCAAGCACCAGTTGTGGAGGGATTCATGAAGCTTTAATGGTGGATGATGGTATGCTTCACCTTGAAGTCGAGGCCACTACTGATTTGAACTTGTCTGACATGATCAAAACTCAAACTGTCAACCATCCCCTTTATCCAAAACTGATGCAAGGGATAATTGAAGGTGGAAAGAAAGAGGTCATGATCCTTATATACTTCTTCTTGGTGCGTAAACCGCTTTTGAGTAGCGAAGAAAATAACATTGACGAGTAA

Protein sequence

MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMIKTQTVNHPLYPKLMQGIIEGGKKEVMILIYFFLVRKPLLSSEENNIDE

Homology

[Close]

BLAST of Bhi11G000108 vs. NCBI nr
Match: XP_008453434.2 (PREDICTED: homeobox protein knotted-1-like 1 isoform X3 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 7.8e-25
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMI 60
          MEEFY LNN +ITS SNGVVGSEAIASTSCG IHEALMVDD ML LE E TT LN+SDMI
Sbjct: 1  MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMI 60

Query: 61 KTQTVNHPLYPKLMQGIIE 80
          KTQ VNHPLYPKL+   IE
Sbjct: 61 KTQIVNHPLYPKLVSAYIE 79

[Close]

BLAST of Bhi11G000108 vs. NCBI nr
Match: XP_008453425.1 (PREDICTED: homeobox protein knotted-1-like 1 isoform X2 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 7.8e-25
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMI 60
          MEEFY LNN +ITS SNGVVGSEAIASTSCG IHEALMVDD ML LE E TT LN+SDMI
Sbjct: 1  MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMI 60

Query: 61 KTQTVNHPLYPKLMQGIIE 80
          KTQ VNHPLYPKL+   IE
Sbjct: 61 KTQIVNHPLYPKLVSAYIE 79

[Close]

BLAST of Bhi11G000108 vs. NCBI nr
Match: XP_008453416.1 (PREDICTED: homeobox protein knotted-1-like 1 isoform X1 [Cucumis melo] >KAA0048072.1 homeobox protein knotted-1-like 1 isoform X1 [Cucumis melo var. makuwa] >TYJ96464.1 homeobox protein knotted-1-like 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 7.8e-25
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMI 60
          MEEFY LNN +ITS SNGVVGSEAIASTSCG IHEALMVDD ML LE E TT LN+SDMI
Sbjct: 1  MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMI 60

Query: 61 KTQTVNHPLYPKLMQGIIE 80
          KTQ VNHPLYPKL+   IE
Sbjct: 61 KTQIVNHPLYPKLVSAYIE 79

[Close]

BLAST of Bhi11G000108 vs. NCBI nr
Match: XP_004144749.1 (homeobox protein knotted-1-like 1 [Cucumis sativus] >KGN61003.1 hypothetical protein Csa_021166 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 7.8e-25
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMI 60
          MEEFY LNN +ITS SNGVVGSEAIASTSCG IHEALMVDD ML LE E TT LN+SDMI
Sbjct: 1  MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMI 60

Query: 61 KTQTVNHPLYPKLMQGIIE 80
          KTQ VNHPLYPKL+   IE
Sbjct: 61 KTQIVNHPLYPKLVSAYIE 79

[Close]

BLAST of Bhi11G000108 vs. NCBI nr
Match: XP_038889741.1 (homeobox protein knotted-1-like 1 [Benincasa hispida])

HSP 1 Score: 122.1 bits (305), Expect = 3.0e-24
Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMI 60
          MEEFY LNN +I S SN VVG EAIASTSCGGIHEALMVDD MLHLE EATT  N+S+MI
Sbjct: 1  MEEFYRLNNSVIASYSNSVVGGEAIASTSCGGIHEALMVDDDMLHLEAEATTGSNMSNMI 60

Query: 61 KTQTVNHPLYPKLMQGIIE 80
          KTQ VNHPLYPKL+   +E
Sbjct: 61 KTQIVNHPLYPKLVSAYVE 79

[Close]

BLAST of Bhi11G000108 vs. ExPASy TrEMBL
Match: A0A5D3BBX6 (Homeobox protein knotted-1-like 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001080 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.8e-25
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMI 60
          MEEFY LNN +ITS SNGVVGSEAIASTSCG IHEALMVDD ML LE E TT LN+SDMI
Sbjct: 1  MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMI 60

Query: 61 KTQTVNHPLYPKLMQGIIE 80
          KTQ VNHPLYPKL+   IE
Sbjct: 61 KTQIVNHPLYPKLVSAYIE 79

[Close]

BLAST of Bhi11G000108 vs. ExPASy TrEMBL
Match: A0A0A0LGZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034560 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.8e-25
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMI 60
          MEEFY LNN +ITS SNGVVGSEAIASTSCG IHEALMVDD ML LE E TT LN+SDMI
Sbjct: 1  MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMI 60

Query: 61 KTQTVNHPLYPKLMQGIIE 80
          KTQ VNHPLYPKL+   IE
Sbjct: 61 KTQIVNHPLYPKLVSAYIE 79

[Close]

BLAST of Bhi11G000108 vs. ExPASy TrEMBL
Match: A0A1S3BVM4 (homeobox protein knotted-1-like 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494133 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.8e-25
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMI 60
          MEEFY LNN +ITS SNGVVGSEAIASTSCG IHEALMVDD ML LE E TT LN+SDMI
Sbjct: 1  MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMI 60

Query: 61 KTQTVNHPLYPKLMQGIIE 80
          KTQ VNHPLYPKL+   IE
Sbjct: 61 KTQIVNHPLYPKLVSAYIE 79

[Close]

BLAST of Bhi11G000108 vs. ExPASy TrEMBL
Match: A0A1S3BW74 (homeobox protein knotted-1-like 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494133 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.8e-25
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMI 60
          MEEFY LNN +ITS SNGVVGSEAIASTSCG IHEALMVDD ML LE E TT LN+SDMI
Sbjct: 1  MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMI 60

Query: 61 KTQTVNHPLYPKLMQGIIE 80
          KTQ VNHPLYPKL+   IE
Sbjct: 61 KTQIVNHPLYPKLVSAYIE 79

[Close]

BLAST of Bhi11G000108 vs. ExPASy TrEMBL
Match: A0A1S3BVN8 (homeobox protein knotted-1-like 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494133 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.8e-25
Identity = 63/79 (79.75%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 1  MEEFYMLNNFIITSNSNGVVGSEAIASTSCGGIHEALMVDDGMLHLEVEATTDLNLSDMI 60
          MEEFY LNN +ITS SNGVVGSEAIASTSCG IHEALMVDD ML LE E TT LN+SDMI
Sbjct: 1  MEEFYRLNNPVITSYSNGVVGSEAIASTSCGEIHEALMVDDDMLQLEAEVTTGLNMSDMI 60

Query: 61 KTQTVNHPLYPKLMQGIIE 80
          KTQ VNHPLYPKL+   IE
Sbjct: 61 KTQIVNHPLYPKLVSAYIE 79

The following BLAST results are available for this feature:

BLAST of Bhi11G000108 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G000108 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G000108 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453434.2	7.8e-25	79.75	PREDICTED: homeobox protein knotted-1-like 1 isoform X3 [Cucumis melo]	[more]
XP_008453425.1	7.8e-25	79.75	PREDICTED: homeobox protein knotted-1-like 1 isoform X2 [Cucumis melo]	[more]
XP_008453416.1	7.8e-25	79.75	PREDICTED: homeobox protein knotted-1-like 1 isoform X1 [Cucumis melo] >KAA00480...	[more]
XP_004144749.1	7.8e-25	79.75	homeobox protein knotted-1-like 1 [Cucumis sativus] >KGN61003.1 hypothetical pro...	[more]
XP_038889741.1	3.0e-24	75.95	homeobox protein knotted-1-like 1 [Benincasa hispida]	[more]

BLAST of Bhi11G000108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BBX6	3.8e-25	79.75	Homeobox protein knotted-1-like 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0LGZ6	3.8e-25	79.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034560 PE=3 SV=1	[more]
A0A1S3BVM4	3.8e-25	79.75	homeobox protein knotted-1-like 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S3BW74	3.8e-25	79.75	homeobox protein knotted-1-like 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S3BVN8	3.8e-25	79.75	homeobox protein knotted-1-like 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000108	Bhi11M000108	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding