Bhi11G000030 (gene) Wax gourd (B227) v1

Overview


Name	Bhi11G000030
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	K-box region and MADS-box transcription factor family protein
Location	chr11: 901785 .. 902018 (+)
RNA-Seq Expression	Bhi11G000030
Synteny	Bhi11G000030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTAGAACCTAAGGGTTCGGTTGCTCCAAGAAATCTCCTTTCTTTCTCGTCCACTCAGGGGGGTGCGGACACACCTGCGCGGATTACAGGTGACGGTTACAAGAATGGCGGGGAAGTGAACAGTACCCGACGACATTCAGGGATGGATCTAAACCCATCGGGTAGGGATAATCATTCTGGTCCTAGGAGAGGTGGCGACCATTCTCAAGAACCAAAAAGACTGAGATGA

mRNA sequence

ATGAGTCTAGAACCTAAGGGTTCGGTTGCTCCAAGAAATCTCCTTTCTTTCTCGTCCACTCAGGGGGGTGCGGACACACCTGCGCGGATTACAGGTGACGGTTACAAGAATGGCGGGGAAGTGAACAGTACCCGACGACATTCAGGGATGGATCTAAACCCATCGGGTAGGGATAATCATTCTGGTCCTAGGAGAGGTGGCGACCATTCTCAAGAACCAAAAAGACTGAGATGA

Coding sequence (CDS)

ATGAGTCTAGAACCTAAGGGTTCGGTTGCTCCAAGAAATCTCCTTTCTTTCTCGTCCACTCAGGGGGGTGCGGACACACCTGCGCGGATTACAGGTGACGGTTACAAGAATGGCGGGGAAGTGAACAGTACCCGACGACATTCAGGGATGGATCTAAACCCATCGGGTAGGGATAATCATTCTGGTCCTAGGAGAGGTGGCGACCATTCTCAAGAACCAAAAAGACTGAGATGA

Protein sequence

MSLEPKGSVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNHSGPRRGGDHSQEPKRLR

Homology

[Close]

BLAST of Bhi11G000030 vs. NCBI nr
Match: KAA0046436.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK26900.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 7   GSVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNHSGPRRG 66
           G VAP NLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMD++PSGRDNHSGP RG
Sbjct: 49  GWVAPINLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRG 108

Query: 67  GDHSQEPKRL 77
           GDHSQEPKRL
Sbjct: 109 GDHSQEPKRL 118

[Close]

BLAST of Bhi11G000030 vs. NCBI nr
Match: PKI33358.1 (hypothetical protein CRG98_046255 [Punica granatum])

HSP 1 Score: 107.8 bits (268), Expect = 4.1e-20
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 22 GGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNHSGPRRGGDHSQEPKRL 77
          GGADTPARITGDGYKNGGEVNSTRRHSGMD++PSGRDNHSGP RGGDHSQEPKRL
Sbjct: 44 GGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRL 98

[Close]

BLAST of Bhi11G000030 vs. NCBI nr
Match: PKU60431.1 (hypothetical protein MA16_Dca027617 [Dendrobium catenatum] >PKU62315.1 hypothetical protein MA16_Dca028219 [Dendrobium catenatum])

HSP 1 Score: 106.7 bits (265), Expect = 9.2e-20
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MSLEPKGSVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNH 60
          + LEP G +  R +LSFSST GGADTPARITGDGYKNGGEVNSTRRHSGM+++PSGRDNH
Sbjct: 12 LGLEPGGLL--REILSFSSTPGGADTPARITGDGYKNGGEVNSTRRHSGMNVDPSGRDNH 71

Query: 61 SGPRRGGDHS 71
          SGP RGGD S
Sbjct: 72 SGPGRGGDTS 79

[Close]

BLAST of Bhi11G000030 vs. NCBI nr
Match: GEW95828.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 106.7 bits (265), Expect = 9.2e-20
Identity = 55/68 (80.88%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 9   VAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNHSGPRRGGD 68
           VAPRN   F    GG +TPARITGD YKNGGEVNSTRRHSGMD++PSGRDNHSGP RGGD
Sbjct: 585 VAPRNPF-FLVHSGGVNTPARITGDSYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGD 644

Query: 69  HSQEPKRL 77
           HSQEPKRL
Sbjct: 645 HSQEPKRL 651

[Close]

BLAST of Bhi11G000030 vs. NCBI nr
Match: YP_009974724.1 (hypothetical protein I9989_mgp20 [Helianthus strumosus] >QNJ33685.1 hypothetical protein [Helianthus strumosus])

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 7   GSVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNHSGPRRG 66
           G  + ++ LS    +GGADTPARITGD YKNGGEVNSTRRHSGMD++PSGRDNHSGP RG
Sbjct: 48  GGCSEKSFLS-RPLRGGADTPARITGDSYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRG 107

Query: 67  GDHSQEPKRL 77
           GDHSQEPKRL
Sbjct: 108 GDHSQEPKRL 116

[Close]

BLAST of Bhi11G000030 vs. ExPASy TrEMBL
Match: A0A5A7TWJ9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83073G00020 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.9e-27
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 7   GSVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNHSGPRRG 66
           G VAP NLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMD++PSGRDNHSGP RG
Sbjct: 49  GWVAPINLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRG 108

Query: 67  GDHSQEPKRL 77
           GDHSQEPKRL
Sbjct: 109 GDHSQEPKRL 118

[Close]

BLAST of Bhi11G000030 vs. ExPASy TrEMBL
Match: A0A7N0RCK1 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.9e-21
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 6   KGSVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNHSGPRR 65
           +G  + ++ LS    +GGADTPARITGDGYKNGGEVNSTRRHSGMD++PSGRDNHSGP R
Sbjct: 47  RGGCSDKSFLS-CPLRGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGR 106

Query: 66  GGDHSQEPKRL 77
           GGDHSQEPKRL
Sbjct: 107 GGDHSQEPKRL 116

[Close]

BLAST of Bhi11G000030 vs. ExPASy TrEMBL
Match: A0A2I0HNS7 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_046255 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.0e-20
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 22 GGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNHSGPRRGGDHSQEPKRL 77
          GGADTPARITGDGYKNGGEVNSTRRHSGMD++PSGRDNHSGP RGGDHSQEPKRL
Sbjct: 44 GGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRL 98

[Close]

BLAST of Bhi11G000030 vs. ExPASy TrEMBL
Match: A0A2I0VFY9 (Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca027617 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MSLEPKGSVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNH 60
          + LEP G +  R +LSFSST GGADTPARITGDGYKNGGEVNSTRRHSGM+++PSGRDNH
Sbjct: 12 LGLEPGGLL--REILSFSSTPGGADTPARITGDGYKNGGEVNSTRRHSGMNVDPSGRDNH 71

Query: 61 SGPRRGGDHS 71
          SGP RGGD S
Sbjct: 72 SGPGRGGDTS 79

[Close]

BLAST of Bhi11G000030 vs. ExPASy TrEMBL
Match: A0A7G8JSU7 (Uncharacterized protein OS=Helianthus grosseserratus OX=73291 GN=orf117 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.8e-20
Identity = 54/70 (77.14%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 7   GSVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDLNPSGRDNHSGPRRG 66
           G  + ++ LS    +GGADTPARITGD YKNGGEVNSTRRHSGMD++PSGRDNHSGP RG
Sbjct: 48  GGCSEKSFLS-RPLRGGADTPARITGDSYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRG 107

Query: 67  GDHSQEPKRL 77
           GDHSQEPKRL
Sbjct: 108 GDHSQEPKRL 116

The following BLAST results are available for this feature:

BLAST of Bhi11G000030 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G000030 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi11G000030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046436.1	1.0e-26	92.86	reverse transcriptase [Cucumis melo var. makuwa] >TYK26900.1 reverse transcripta...	[more]
PKI33358.1	4.1e-20	94.55	hypothetical protein CRG98_046255 [Punica granatum]	[more]
PKU60431.1	9.2e-20	78.57	hypothetical protein MA16_Dca027617 [Dendrobium catenatum] >PKU62315.1 hypotheti...	[more]
GEW95828.1	9.2e-20	80.88	hypothetical protein [Tanacetum cinerariifolium]	[more]
YP_009974724.1	1.2e-19	77.14	hypothetical protein I9989_mgp20 [Helianthus strumosus] >QNJ33685.1 hypothetical...	[more]

BLAST of Bhi11G000030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWJ9	4.9e-27	92.86	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83...	[more]
A0A7N0RCK1	6.9e-21	77.46	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
A0A2I0HNS7	2.0e-20	94.55	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_046255 PE=4 SV=1	[more]
A0A2I0VFY9	4.4e-20	78.57	Uncharacterized protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca027617 PE=4...	[more]
A0A7G8JSU7	5.8e-20	77.14	Uncharacterized protein OS=Helianthus grosseserratus OX=73291 GN=orf117 PE=4 SV=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000030	Bhi11M000030	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003964	RNA-directed DNA polymerase activity