Bhi10G001835 (gene) Wax gourd (B227) v1

Overview


Name	Bhi10G001835
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrotransposable element Tf2
Location	chr10: 57943984 .. 57944803 (+)
RNA-Seq Expression	Bhi10G001835
Synteny	Bhi10G001835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCCGGAGACCATTCCGTGTTTCGTCGTTTTTCACAAGAAGCGGTTCTTGCCGGCGATTCGCCGGTTTCGGGAATTGGCGGCCGACGGGAACCATTGCGGAGAATTTTAAATCTCTTAGGGGATTGCACCAGATGTATCCTGACTCGATTGCCCTTCGTCCTGCTTGCTTGCGAACTTGGTTCGGTCCGGATAGGTCCGATGTTAAAGGATGGTTTGAAGTGAGGACGCGAGGAAGTTGNNNNNNNNNNNNNNNNNNNNNNNNNCATGGTGGAACTACTTTGGATTATCTGAAGAAATCTTTCCTGTGGAAGTCCAAAGGTCTTACCACCTCTTTCAAACCAGCATCTATGCGTCTCCACTCTCAAAGACGTTTAGATTCGCGCTATACTTTCAAATTCTGTGGATCTTTTGTTGGAATTTCCAACTAGGTCCATACGGAAACTTCAAAGCCTTAAGCAAGGTATTAAGAATCAAATGGTGGGAAAAATATGATTACTCCCACCTAGAAGCGTCAAAGTTGAAGGATTGGTTCAAAGCCAATGTTCATCTACAAGTCTTATCTCGCCAAAAAGATGAACAATTCACTTTGACAAAGAATTCAATTATGAGTTCTCTAGCTGGAGCAGGATCACATGCTGATTTTACTTCAGTACTCAATACAGTTGTCAGGCAATTATTAGACCCTGACGAAACTCAAGAAGATGCAAATTCTTCTGCATCTGTGAACAATGAAGCTGAAGACGACGAAGATGACTACGACCCCTTCGTCGATTACGACATCAATGACCCGTTTTTAGACTCAAAACCAAATTAG

mRNA sequence

ATGATCCCCGGAGACCATTCCGTGTTTCGTCGTTTTTCACAAGAAGCGGTTCTTGCCGGCGATTCGCCGGTTTCGGGAATTGGCGGCCGACGGGAACCATTGCGGAGAATTTTAAATCTCTTAGGGGATTGCACCAGATGTATCCTGACTCGATTGCCCTTCGTCCTGCTTGCTTGCGAACTTGGTTCGGTCCGGATAGGTCCATACGGAAACTTCAAAGCCTTAAGCAAGGTATTAAGAATCAAATGGTGGGAAAAATATGATTACTCCCACCTAGAAGCGTCAAAGTTGAAGGATTGGTTCAAAGCCAATGTTCATCTACAAGTCTTATCTCGCCAAAAAGATGAACAATTCACTTTGACAAAGAATTCAATTATGAGTTCTCTAGCTGGAGCAGGATCACATGCTGATTTTACTTCAGTACTCAATACAGTTGTCAGGCAATTATTAGACCCTGACGAAACTCAAGAAGATGCAAATTCTTCTGCATCTGTGAACAATGAAGCTGAAGACGACGAAGATGACTACGACCCCTTCGTCGATTACGACATCAATGACCCGTTTTTAGACTCAAAACCAAATTAG

Coding sequence (CDS)

ATGATCCCCGGAGACCATTCCGTGTTTCGTCGTTTTTCACAAGAAGCGGTTCTTGCCGGCGATTCGCCGGTTTCGGGAATTGGCGGCCGACGGGAACCATTGCGGAGAATTTTAAATCTCTTAGGGGATTGCACCAGATGTATCCTGACTCGATTGCCCTTCGTCCTGCTTGCTTGCGAACTTGGTTCGGTCCGGATAGGTCCATACGGAAACTTCAAAGCCTTAAGCAAGGTATTAAGAATCAAATGGTGGGAAAAATATGATTACTCCCACCTAGAAGCGTCAAAGTTGAAGGATTGGTTCAAAGCCAATGTTCATCTACAAGTCTTATCTCGCCAAAAAGATGAACAATTCACTTTGACAAAGAATTCAATTATGAGTTCTCTAGCTGGAGCAGGATCACATGCTGATTTTACTTCAGTACTCAATACAGTTGTCAGGCAATTATTAGACCCTGACGAAACTCAAGAAGATGCAAATTCTTCTGCATCTGTGAACAATGAAGCTGAAGACGACGAAGATGACTACGACCCCTTCGTCGATTACGACATCAATGACCCGTTTTTAGACTCAAAACCAAATTAG

Protein sequence

MIPGDHSVFRRFSQEAVLAGDSPVSGIGGRREPLRRILNLLGDCTRCILTRLPFVLLACELGSVRIGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNSIMSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDINDPFLDSKPN

Homology

[Close]

BLAST of Bhi10G001835 vs. NCBI nr
Match: KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 2.2e-33
Identity = 77/129 (59.69%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 65  RIGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNS 124
           ++GP GNFKALSK LRIKWWEK++YSHLE +K+KDWFKAN+HLQ ++RQ+DE F LTKN+
Sbjct: 293 QLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA 352

Query: 125 IMSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDI 184
           +MS+LAGA +  +F SV+N VV  L D ++   +  S ASVNN    D+ DYDP+   DI
Sbjct: 353 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNA---DDFDYDPYEGLDI 412

Query: 185 NDPFLDSKP 194
           NDPFLD++P
Sbjct: 413 NDPFLDTQP 418

[Close]

BLAST of Bhi10G001835 vs. NCBI nr
Match: KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-33
Identity = 77/129 (59.69%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 65  RIGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNS 124
           ++GP GNFKALSK LRIKWWEK++YSHLE +K+KDWFKAN+HLQ ++RQ+DE F LTKN+
Sbjct: 293 QLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA 352

Query: 125 IMSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDI 184
           +MS+LAGA +  +F SV+N VV  L D ++   +  S ASVNN    D+ DYDP+   DI
Sbjct: 353 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNV---DDFDYDPYEGLDI 412

Query: 185 NDPFLDSKP 194
           NDPFLD++P
Sbjct: 413 NDPFLDTQP 418

[Close]

BLAST of Bhi10G001835 vs. NCBI nr
Match: KAA0068172.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-33
Identity = 77/129 (59.69%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 65  RIGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNS 124
           ++GP GNFKALSK LRIKWWEK++YSHLE +K+KDWFKAN+HLQ ++RQ+DE F LTKN+
Sbjct: 293 QLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA 352

Query: 125 IMSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDI 184
           +MS+LAGA +  +F SV+N VV  L D ++   +  S ASVNN    D+ DYDP+   DI
Sbjct: 353 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNV---DDLDYDPYEGLDI 412

Query: 185 NDPFLDSKP 194
           NDPFLD++P
Sbjct: 413 NDPFLDTQP 418

[Close]

BLAST of Bhi10G001835 vs. NCBI nr
Match: KAA0038028.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-32
Identity = 75/128 (58.59%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 66  IGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNSI 125
           +GP GNFKALSK LRIKWWEK++YSHLE +K+KDWFKAN+HLQ ++RQ+DE F LTKN++
Sbjct: 211 LGPLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAV 270

Query: 126 MSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDIN 185
           MS+L GA +  +F SV+N VV  L D ++   +  S AS+NN    D+ DYDP+   DIN
Sbjct: 271 MSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISPASINNV---DDLDYDPYEGLDIN 330

Query: 186 DPFLDSKP 194
           DPFLD++P
Sbjct: 331 DPFLDTQP 335

[Close]

BLAST of Bhi10G001835 vs. NCBI nr
Match: KAA0038025.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-32
Identity = 76/128 (59.38%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 66  IGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNSI 125
           +GP GNFKALSK LRIKWWEK++YSHLE +K+KDWFKAN+HLQ ++RQ+DE F LTKN++
Sbjct: 186 LGPLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAV 245

Query: 126 MSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDIN 185
           MS+L GA +  +F SV+N VV  L D ++   +  S ASVNN    D+ DYDP+   DIN
Sbjct: 246 MSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNV---DDLDYDPYEGLDIN 305

Query: 186 DPFLDSKP 194
           DPFLD++P
Sbjct: 306 DPFLDTQP 310

[Close]

BLAST of Bhi10G001835 vs. ExPASy TrEMBL
Match: A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.0e-33
Identity = 77/129 (59.69%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 65  RIGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNS 124
           ++GP GNFKALSK LRIKWWEK++YSHLE +K+KDWFKAN+HLQ ++RQ+DE F LTKN+
Sbjct: 293 QLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA 352

Query: 125 IMSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDI 184
           +MS+LAGA +  +F SV+N VV  L D ++   +  S ASVNN    D+ DYDP+   DI
Sbjct: 353 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNA---DDFDYDPYEGLDI 412

Query: 185 NDPFLDSKP 194
           NDPFLD++P
Sbjct: 413 NDPFLDTQP 418

[Close]

BLAST of Bhi10G001835 vs. ExPASy TrEMBL
Match: A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 77/129 (59.69%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 65  RIGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNS 124
           ++GP GNFKALSK LRIKWWEK++YSHLE +K+KDWFKAN+HLQ ++RQ+DE F LTKN+
Sbjct: 293 QLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA 352

Query: 125 IMSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDI 184
           +MS+LAGA +  +F SV+N VV  L D ++   +  S ASVNN    D+ DYDP+   DI
Sbjct: 353 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNV---DDFDYDPYEGLDI 412

Query: 185 NDPFLDSKP 194
           NDPFLD++P
Sbjct: 413 NDPFLDTQP 418

[Close]

BLAST of Bhi10G001835 vs. ExPASy TrEMBL
Match: A0A5A7VIK9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G001410 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 77/129 (59.69%), Postives = 100/129 (77.52%), Query Frame = 0


Query: 65  RIGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNS 124
           ++GP GNFKALSK LRIKWWEK++YSHLE +K+KDWFKAN+HLQ ++RQ+DE F LTKN+
Sbjct: 293 QLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA 352

Query: 125 IMSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDI 184
           +MS+LAGA +  +F SV+N VV  L D ++   +  S ASVNN    D+ DYDP+   DI
Sbjct: 353 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNV---DDLDYDPYEGLDI 412

Query: 185 NDPFLDSKP 194
           NDPFLD++P
Sbjct: 413 NDPFLDTQP 418

[Close]

BLAST of Bhi10G001835 vs. ExPASy TrEMBL
Match: A0A5A7T975 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002220 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.2e-33
Identity = 76/128 (59.38%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 66  IGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNSI 125
           +GP GNFKALSK LRIKWWEK++YSHLE +K+KDWFKAN+HLQ ++RQ+DE F LTKN++
Sbjct: 186 LGPLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAV 245

Query: 126 MSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDIN 185
           MS+L GA +  +F SV+N VV  L D ++   +  S ASVNN    D+ DYDP+   DIN
Sbjct: 246 MSTLVGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNV---DDLDYDPYEGLDIN 305

Query: 186 DPFLDSKP 194
           DPFLD++P
Sbjct: 306 DPFLDTQP 310

[Close]

BLAST of Bhi10G001835 vs. ExPASy TrEMBL
Match: A0A5A7T5B0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.2e-33
Identity = 75/128 (58.59%), Postives = 98/128 (76.56%), Query Frame = 0


Query: 66  IGPYGNFKALSKVLRIKWWEKYDYSHLEASKLKDWFKANVHLQVLSRQKDEQFTLTKNSI 125
           +GP GNFKALSK LRIKWWEK++YSHLE +K+KDWFKAN+HLQ ++RQ+DE F LTKN++
Sbjct: 211 LGPLGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAV 270

Query: 126 MSSLAGAGSHADFTSVLNTVVRQLLDPDETQEDANSSASVNNEAEDDEDDYDPFVDYDIN 185
           MS+L GA +  +F SV+N VV  L D ++   +  S AS+NN    D+ DYDP+   DIN
Sbjct: 271 MSTLVGASTQQEFNSVVNNVVVNLSDDNDDLSEDISPASINNV---DDLDYDPYEGLDIN 330

Query: 186 DPFLDSKP 194
           DPFLD++P
Sbjct: 331 DPFLDTQP 335

The following BLAST results are available for this feature:

BLAST of Bhi10G001835 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G001835 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi10G001835 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063832.1	2.2e-33	59.69	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0056777.1	2.8e-33	59.69	Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran...	[more]
KAA0068172.1	3.7e-33	59.69	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0038028.1	1.1e-32	58.59	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0038025.1	1.1e-32	59.38	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Bhi10G001835 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6D1	1.0e-33	59.69	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7UVN1	1.4e-33	59.69	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7VIK9	1.8e-33	59.69	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7T975	5.2e-33	59.38	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]
A0A5A7T5B0	5.2e-33	58.59	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G002250 PE...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi10M001835	Bhi10M001835	mRNA