Bhi09G002894 (gene) Wax gourd (B227) v1

Overview


Name	Bhi09G002894
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr9: 89158811 .. 89159212 (-)
RNA-Seq Expression	Bhi09G002894
Synteny	Bhi09G002894

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATGAGGAGCAACATCACTCCCCAACCAAGCAGCAAGTGGAAGGACCAACTACCCGAGGAAGGGGTGAGCAACGCACCACATCCAAACGCTCCAAGTCTAAAGGCCCGACAGTGAGGGATCATGTCGACACTCGCCTGGCCACCCTTGAGAGTGAGTTAGAGGATGTGAAGCTCATGGTTAGCTTGTTGAGTGAAAATTTTGACGAGCTAGTCCAAGAGAACACCGAGATAAGCCTGGCAACCAATGAAATGATCGAGTTCCTCAGACAAGAATTCAAGTCGGAGGTAAGTTTACTCTCCACTGAAGTATCTAATCTATGTAAGTTTGTGGAAGAGAAAATACATAGACTTCGTAAAGAAATCAATGACGTTCGAGCTGAATCTCGAGCTTATTAA

mRNA sequence

ATGGCTTATGAGGAGCAACATCACTCCCCAACCAAGCAGCAAGTGGAAGGACCAACTACCCGAGGAAGGGGTGAGCAACGCACCACATCCAAACGCTCCAAGTCTAAAGGCCCGACAGTGAGGGATCATGTCGACACTCGCCTGGCCACCCTTGAGAGTGAGTTAGAGGATGTGAAGCTCATGGTTAGCTTGTTGAGTGAAAATTTTGACGAGCTAGTCCAAGAGAACACCGAGATAAGCCTGGCAACCAATGAAATGATCGAGTTCCTCAGACAAGAATTCAAGTCGGAGGTAAGTTTACTCTCCACTGAAGTATCTAATCTATGTAAGTTTGTGGAAGAGAAAATACATAGACTTCGTAAAGAAATCAATGACGTTCGAGCTGAATCTCGAGCTTATTAA

Coding sequence (CDS)

ATGGCTTATGAGGAGCAACATCACTCCCCAACCAAGCAGCAAGTGGAAGGACCAACTACCCGAGGAAGGGGTGAGCAACGCACCACATCCAAACGCTCCAAGTCTAAAGGCCCGACAGTGAGGGATCATGTCGACACTCGCCTGGCCACCCTTGAGAGTGAGTTAGAGGATGTGAAGCTCATGGTTAGCTTGTTGAGTGAAAATTTTGACGAGCTAGTCCAAGAGAACACCGAGATAAGCCTGGCAACCAATGAAATGATCGAGTTCCTCAGACAAGAATTCAAGTCGGAGGTAAGTTTACTCTCCACTGAAGTATCTAATCTATGTAAGTTTGTGGAAGAGAAAATACATAGACTTCGTAAAGAAATCAATGACGTTCGAGCTGAATCTCGAGCTTATTAA

Protein sequence

MAYEEQHHSPTKQQVEGPTTRGRGEQRTTSKRSKSKGPTVRDHVDTRLATLESELEDVKLMVSLLSENFDELVQENTEISLATNEMIEFLRQEFKSEVSLLSTEVSNLCKFVEEKIHRLRKEINDVRAESRAY

Homology

[Close]

BLAST of Bhi09G002894 vs. ExPASy TrEMBL
Match: A0A5A7VEX8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.7e-23
Identity = 65/119 (54.62%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MAYEEQHHSPTKQQVEGPTTRGRGEQRTTSKRSKSKGPTVRDHVDTRLATLESELEDVKL 60
           M+ EE H SP +Q +EGP TRGR EQ + ++RSKSKGP VR+HVDTRL  LE  +EDV+L
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  MVSLLSENFDELVQENTEISLATNEMIEFLRQEFKSEVSLLSTEVSNLCKFVEEKIHRL 120
            V  LSENF+ELVQEN EI+    EMIE + + F+ E+  L++ V+ L  FVE ++H L
Sbjct: 61  AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELTSTVTTLKAFVEGELHNL 119

[Close]

BLAST of Bhi09G002894 vs. ExPASy TrEMBL
Match: A0A5A7TAA5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00340 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.7e-23
Identity = 65/119 (54.62%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 1   MAYEEQHHSPTKQQVEGPTTRGRGEQRTTSKRSKSKGPTVRDHVDTRLATLESELEDVKL 60
           M+ EE H SP +Q +EGP TRGR EQ + ++RSKSKGP VR+HVDTRL  LE  +EDV+L
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  MVSLLSENFDELVQENTEISLATNEMIEFLRQEFKSEVSLLSTEVSNLCKFVEEKIHRL 120
            V  LSENF+ELVQEN EI+    EMIE + + F+ E+  L++ V+ L  FVE ++H L
Sbjct: 61  AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQEELKELASTVTTLKAFVEGELHNL 119

[Close]

BLAST of Bhi09G002894 vs. ExPASy TrEMBL
Match: A0A5D3D3V4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004150 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.4e-23
Identity = 65/119 (54.62%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 1   MAYEEQHHSPTKQQVEGPTTRGRGEQRTTSKRSKSKGPTVRDHVDTRLATLESELEDVKL 60
           M+ EE H SP +Q +EGP TRGR +Q + ++RSKSKGPTVR+HVDTRL  LE  +EDV+L
Sbjct: 91  MSAEEGHTSPVEQVIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQL 150

Query: 61  MVSLLSENFDELVQENTEISLATNEMIEFLRQEFKSEVSLLSTEVSNLCKFVEEKIHRL 120
            V  LSENF+ELVQEN EI+    EMIE + + F+ E+  L++ V+ L  FVE ++H L
Sbjct: 151 AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHDL 209

[Close]

BLAST of Bhi09G002894 vs. ExPASy TrEMBL
Match: A0A5A7TFP3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006290 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.4e-23
Identity = 65/119 (54.62%), Postives = 86/119 (72.27%), Query Frame = 0


Query: 1   MAYEEQHHSPTKQQVEGPTTRGRGEQRTTSKRSKSKGPTVRDHVDTRLATLESELEDVKL 60
           M+ EE H SP +Q +EGP TRGR +Q + ++RSKSKGPTVR+HVDTRL  LE  +EDV+L
Sbjct: 154 MSAEEGHTSPVEQVIEGPVTRGRKKQHSPTRRSKSKGPTVREHVDTRLTNLEKGMEDVQL 213

Query: 61  MVSLLSENFDELVQENTEISLATNEMIEFLRQEFKSEVSLLSTEVSNLCKFVEEKIHRL 120
            V  LSENF+ELVQEN EI+    EMIE + + F+ E+  L++ V+ L  FVE ++H L
Sbjct: 214 AVGRLSENFEELVQENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHDL 272

[Close]

BLAST of Bhi09G002894 vs. ExPASy TrEMBL
Match: A0A1S3BG92 (uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 64/119 (53.78%), Postives = 84/119 (70.59%), Query Frame = 0


Query: 1   MAYEEQHHSPTKQQVEGPTTRGRGEQRTTSKRSKSKGPTVRDHVDTRLATLESELEDVKL 60
           M+ EE H SP +Q +EGP TRGR EQ + ++RSKSKGP VR+HVDTRL  LE  +EDV+L
Sbjct: 1   MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKSKGPAVREHVDTRLTNLEQGMEDVQL 60

Query: 61  MVSLLSENFDELVQENTEISLATNEMIEFLRQEFKSEVSLLSTEVSNLCKFVEEKIHRL 120
            V  LSENF+ELV EN EI+    EMIE + + F+ E+  L++ V+ L  FVE ++H L
Sbjct: 61  AVGRLSENFEELVLENAEITSVAKEMIEDMGRTFQKELKELASTVTTLKAFVEGELHNL 119

The following BLAST results are available for this feature:

BLAST of Bhi09G002894 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G002894 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi09G002894 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VEX8	5.7e-23	54.62	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00510 PE=...	[more]
A0A5A7TAA5	5.7e-23	54.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D3V4	7.4e-23	54.62	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TFP3	7.4e-23	54.62	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BG92	3.7e-22	53.78	uncharacterized protein LOC103489499 OS=Cucumis melo OX=3656 GN=LOC103489499 PE=...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..68
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi09M002894	Bhi09M002894	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process