Bhi09G002831 (gene) Wax gourd (B227) v1

Overview
NameBhi09G002831
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Description30S ribosomal protein S20, chloroplastic-like
Locationchr9: 87445126 .. 87449383 (-)
RNA-Seq ExpressionBhi09G002831
SyntenyBhi09G002831
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAACTCGAGTCCAAACAGCCGAAAACAGCAAAGGATAAACCGATACTCAAAACTCTGCTTCCAGTGGATAAAGCGCCAACAGACCATTCTTCTTTTTCTTCTTCAACCTCCGGAGCTTTTCTTTTCAAGAATCGCCCACTCTGAAATGGCGGCAACTGCAGTTAGTTGCTTCTCTCTCCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGCTTCCCCATCTTCTTTGACCCTCAGATCTCTCAGTTTCTCCTCCAACACTTCAGTTTCCGCCTTCTCCAATGGTGAGTTTTTATGGGTTTCCCTTTTTTCCCCTCTTATATTCTTTGTTTAGTAGAAGAACTGCGAAATTGTCTGATGAAGTATCGAATTGCTGGACTTAATTTTTTCCATTTTCGTAAAGGGTGCCTGACGATGAGTAAAGCTCAGAGGCCATCTCGTTACTCTGTGGTCTGCGAGGCTGCTCCTAAGAACAAGGCTGATTCTGCTGCAAAGAGGACTCGGCAGGCTGAGAAAAGGCGCATTTACAACAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTACCTAATTTTGGAATATATTGAAATCTATAAGAATGATGTACTCCAGAATTCGTTTTTATCTCAGAGTATTATATATTTCTTTTATAAGGAACCATTTTTCATTGATGGTATGAAATTACAACACAAAAAGAAAGGGGGGAAGGGGGGTGGTGTGGAACCCCCCTAAGGAGACATTACAAAAGATCTTTACAGTTTGAAAGGAGACTAGTATAGCTATAGTGATGAAATAAGGGAGAACATTTTACACCGAGTCACAACCAAACTACAATAAGAAAGTTCTCTGTCTTGGAAGACTCTTCTATTCCTTTCTTGCACAATGTTCCAGCTGAACAGTCTAATGAAATTTTCCCATAAAAGCTTTTGTCTCCTTTTGGAAAGGGTGCCCTCTAAGGACAAGGGACAGGAGAGATTCAGGATCTTCTGGGAGAGATGTGTGCCAATTAAGAGTAGAAAGGAGATAGTTCCAAAAGGTGTAAGCAAAGGTACATGATACCAAAAGGTAACTCTGTGATTCAGATTGTTGTTTACAAATCGAGCACCATGTGGAGTCAAAACCATGTCAGGCACTATTCTTTGGAGCTTGTCATGGGTTTTGTTGGCTTTCTTATAGCTCCCAAAGAAAAAACTTAATCTTCTTTGGATAATGACCCTTCCATATCAGATGATACAGAGGCAAGATTTCATCAATGGAGGGGGATAAATCATACAAAAGGGAGCTATTTGAAAAAATGCCAGTGGGTTCTAGCTTCCAAAGACCCATGTCAGGTCTGTTATGAAAGGAAACAGCAGGTAGAATGTGTAAAAGAGCGCTTCAATTTCAGCCTCTCTCTGATTCCTTCTGAATATTAGGTTCCAATACTCAAGGTTTGTGTTCCAAAAATCTGTTGCAGCCCCAATCTTGTTGTGAGAAAAGGCATAAATAAGGGGGAATTGTGATGTAAGGGGTTCATATGGACTTTATTTCTGGGCGATTTTCATTTTAGGCTGGTATGTGCCTAATTTGCAAGTACCTATAGACAAACTAAGCTTTATCAAGACTCAAGCGGCTACTTTATGTTCCTTACGATATGTTACAGGTCATTACATTAGATGTTGAAGATAAATGCTTGAAATGACTATCTTTGTCTGAATGTTCCTGAATGGGATGCTTACAATTTTGTAAAATTAAGAGATGGAAGGTAGATGCTTACAATTTTGTACTCAGTACTAGTAGACAATTGGTTATATGTATGTATATATACACAAGCATAATATGATTTCGATTGATAAGGTCAATGGTAACTCATTGGTTTGGATGCTTGACGTGAAAATTTGATAAGTAGAAATTCTTACTTTTCATAAATGATTATAAACACAACCATCATGGGTTGGCCTAGTGGTAAATAAAAGACTTGAGTTTGATAAAGGCCTAAGAGGTAATGGGTTCAATCCATGGTTGCCACCTACTTAGGATTTAATATTATACGAGTTTCTTGATACACAAATATTGTAGGGTCAGGTGAGTTTTTCCGTGAGATTAGTTCAAGTATGCATAAGCTGGTCCGGACACTCATTATATATATCTATATATGATTAAAATTGTAAAACTATATTTATATTATGAACACTGTTCACCACTGAAAAAAAATGACACGAATATTACAATGGCTACTACAGAAAAATTTATGAGTTTCATTTTAGACAGCTTGTAATCAAGACTTCAATGATTGGATCTTCAGTATTATTTGCCATTAAAGTAACCAAACTGATTTTTCATTTATAGGAGTTATTGTTTAAGTTAATAAACTATCAAGCATCCCAAGTTGATGGACAATTGTAAAAGGACTGGAAAGAAAAGTTTGGTAAATGGTAAAGTTGATAGAATATTATTGTCCAGTAGAAGATTGCTTCAGCATAATCCTTTCTAATTGGCTAGAGGTAGGTTCTCTAGGCGGTTTCATCTTGGTTATGTCTGAATTTTAAATAATTTCCTTCAGATTATTTTTTTCCAGCCTCTTTCTTGAAGTCTTGAACTTATTCAAGAACTAAGGTGTTTGAATGGGCCTTTGGCTTAGCTGTAAATTTATTCAAATCTTTGGAGTATCAGCTGTTCTTTGGGTGAGTTATGCAATATGATTAACATCTTTCCTTTGTGTTATCTTGGGGATCTTAGAGTTAATCCTAAGCTGTAAAATCTTGTGTGACCAATGATTAAGAGGACTTTGTTTCTCCTTTTTGGTGCCTCTTGGGAAGTGTCTAATTCTGTTGGCAAAGTTTTCTTTGGTCATCGTTCCAAGAATGCATAAACTTTATGGCTTAATGCTTCAGAGTTTTCTTCTGGGAAATTTGGTCAACAAGGAATGTGTATTTGAGTTATGAACGCAGCATTTGATCTAGAGAACTGATAAATATTCTGCTTGAAATTTCTCCAAATTATTATATTTCTTTTATCATCTTTTTAACAACTTTGTGTCAAGAGAGGCAGTAGGAAGAGGTGATGGATGGTGTCTCCCATTTCATTTATAATTATGATTTCATCTCTTTCTTGCTGAAGCAGAAGAAATGATTGGCTTCCCTAATTATACCTTCCAACTGGTAAAACTTTCCTTTTTTATTAAATCTCTAAAGAGATGCTACTGTCTGATGTAATGGGTTGGTTTCTTTTCCATGGCTTATATCTGCTATAGGACAGGATTAAAGCATAATCTTCATATGGTTGCACAACACATCCTCTACATACTTGCTTTTGCAAATTGTGAAGTAAAAGAGAAGATTTTCTGTTTCTTTCCAGAACTAATCAGCATAATAATGACCTCTCCCTCCTACACTTCCAGGTTTTGGAAGCCTTAGATGGTCTCAAGAAGAAACCTGAAGCACAATCTGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCCGAAGCATACTCAGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCACGACGAAAATCCCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGCCTGATGCTCTATTGAGGAATGAATGGAAAGATGTGATTTTTTGACGTAGATAAATGACGAACTTTTTTTCATCTATTTCTTTTATTTTTGTATTTAGTTTAAAACCTTCTTCCATGTCTACTGTTTAAGTTTCACTTAGGGGCGTTTGGCCCTCCAAGTTAGGTTGGGTTGGGTAGGTAAAATAAACCCACCCACTGTTTGGTTCACCAATTATTAAAGAGGTTTATTACCTCGTTATTTACGTTAACTCACATTTCTCGCCTCATTATTCGCATCAACTTTTTCAATTACTCTCCTCCTATAATAATTACTAACCCAACTCAACTCTGTGTGCTAAACGCTCCCTTATATTTTATCTCCCCTTGGTTGATGGTTCCAATTTTTTAATACCATTACACCTAAAAAAAATTATAAATCATTAACTTAAAATTTTATATTTTTAGGGCAAATTGAATTCATTCGTCTCCTTAAAGGTCTCCAAAAGCTTCAGAAATCCTCTTCTTGAAAAAAGAAGTGCATAAATGATGCAGTTGCATATCACAAAATCTAGTTTGTACATTCTGGCTCTAAACAAATTTAGAGATACTAGATTGGAAGTTTAATGATTTATTCAACACGATTCCTA

mRNA sequence

TAAAACTCGAGTCCAAACAGCCGAAAACAGCAAAGGATAAACCGATACTCAAAACTCTGCTTCCAGTGGATAAAGCGCCAACAGACCATTCTTCTTTTTCTTCTTCAACCTCCGGAGCTTTTCTTTTCAAGAATCGCCCACTCTGAAATGGCGGCAACTGCAGTTAGTTGCTTCTCTCTCCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGCTTCCCCATCTTCTTTGACCCTCAGATCTCTCAGTTTCTCCTCCAACACTTCAGTTTCCGCCTTCTCCAATGGGTGCCTGACGATGAGTAAAGCTCAGAGGCCATCTCGTTACTCTGTGGTCTGCGAGGCTGCTCCTAAGAACAAGGCTGATTCTGCTGCAAAGAGGACTCGGCAGGCTGAGAAAAGGCGCATTTACAACAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTTTTGGAAGCCTTAGATGGTCTCAAGAAGAAACCTGAAGCACAATCTGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCCGAAGCATACTCAGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCACGACGAAAATCCCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGCCTGATGCTCTATTGAGGAATGAATGGAAAGATGTGATTTTTTGACGTAGATAAATGACGAACTTTTTTTCATCTATTTCTTTTATTTTTGTATTTAGTTTAAAACCTTCTTCCATGTCTACTGTTTAAGTTTCACTTAGGGGCGTTTGGCCCTCCAAGTTAGGTTGGGTTGGGTAGGTAAAATAAACCCACCCACTGTTTGGTTCACCAATTATTAAAGAGGTTTATTACCTCGTTATTTACGTTAACTCACATTTCTCGCCTCATTATTCGCATCAACTTTTTCAATTACTCTCCTCCTATAATAATTACTAACCCAACTCAACTCTGTGTGCTAAACGCTCCCTTATATTTTATCTCCCCTTGGTTGATGGTTCCAATTTTTTAATACCATTACACCTAAAAAAAATTATAAATCATTAACTTAAAATTTTATATTTTTAGGGCAAATTGAATTCATTCGTCTCCTTAAAGGTCTCCAAAAGCTTCAGAAATCCTCTTCTTGAAAAAAGAAGTGCATAAATGATGCAGTTGCATATCACAAAATCTAGTTTGTACATTCTGGCTCTAAACAAATTTAGAGATACTAGATTGGAAGTTTAATGATTTATTCAACACGATTCCTA

Coding sequence (CDS)

ATGGCGGCAACTGCAGTTAGTTGCTTCTCTCTCCCTTCTAAGTTCAGAAATCTTTCCCTTAATGCTTCTTCCTCCTGTATTCCCGCTTCCCCATCTTCTTTGACCCTCAGATCTCTCAGTTTCTCCTCCAACACTTCAGTTTCCGCCTTCTCCAATGGGTGCCTGACGATGAGTAAAGCTCAGAGGCCATCTCGTTACTCTGTGGTCTGCGAGGCTGCTCCTAAGAACAAGGCTGATTCTGCTGCAAAGAGGACTCGGCAGGCTGAGAAAAGGCGCATTTACAACAAAGCCCGGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTTTTGGAAGCCTTAGATGGTCTCAAGAAGAAACCTGAAGCACAATCTGAGGAAGTCCTTCCAATTGAGAAGCTCATTGCCGAAGCATACTCAGTGATCGACAAAGCTGTGAGAGTGGGAACATTGCACCGAAACACCGCAGCACGACGAAAATCCCGGCTCGCCAGAAGAAAGAAAGCTGTAGAAATCCACCATGGCTGGTACACCCCAGATTCACCAGCAGCTGCCTGA

Protein sequence

MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKAQRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAAA
Homology
[Close]
BLAST of Bhi09G002831 vs. TAIR 10
Match: AT3G15190.1 (chloroplast 30S ribosomal protein S20, putative )

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-46
Identity = 116/187 (62.03%), Postives = 140/187 (74.87%), Query Frame = 0 

Query: 7   SCFSLPSKFRNLSLNASSSCIPASP------SSLTL-RSLSFSSNTS-VSAFSNGCLTMS 66
           SC +L S+F+ LSL   S   P+S       +S TL  SLSFS + S   AFS G L + 
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWV- 69

Query: 67  KAQRPSRYSVVCE-AAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLK 126
             Q+P R  +VCE AAP  KADSAAKR RQAEKRR+YNK++KSE +TR+KKVLEAL+GLK
Sbjct: 70  --QKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKLI EAYS IDKAV+V  LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]
BLAST of Bhi09G002831 vs. ExPASy Swiss-Prot
Match: P82130 (30S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 PE=1 SV=2)

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-45
Identity = 112/178 (62.92%), Postives = 130/178 (73.03%), Query Frame = 0 

Query: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60
           MA  +  C S+ SK  NLS   SS+  P S    +L+ L+FS+N S   FS GC ++   
Sbjct: 6   MACVSSQCLSISSKLHNLSF--SSTQFPNS----SLKPLTFSANLSQPLFSQGCSSLGSF 65

Query: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QR   +SVVCE A   KADSAAKRTRQAE RR+ NKARKSE+KTR++KV EALD LKKK 
Sbjct: 66  QRRG-FSVVCEVATLKKADSAAKRTRQAETRRLRNKARKSEVKTRMRKVFEALDALKKKS 125

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 179
            A +EE++PI+ LIAEAYS IDKAV  GTLHRNTAARRKSRLAR KK VEIHHGWYTP
Sbjct: 126 GASTEELVPIDNLIAEAYSAIDKAVVKGTLHRNTAARRKSRLARNKKVVEIHHGWYTP 176

[Close]
BLAST of Bhi09G002831 vs. ExPASy Swiss-Prot
Match: Q9ASV6 (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS20 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-45
Identity = 116/187 (62.03%), Postives = 140/187 (74.87%), Query Frame = 0 

Query: 7   SCFSLPSKFRNLSLNASSSCIPASP------SSLTL-RSLSFSSNTS-VSAFSNGCLTMS 66
           SC +L S+F+ LSL   S   P+S       +S TL  SLSFS + S   AFS G L + 
Sbjct: 10  SCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTGNLWV- 69

Query: 67  KAQRPSRYSVVCE-AAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLK 126
             Q+P R  +VCE AAP  KADSAAKR RQAEKRR+YNK++KSE +TR+KKVLEAL+GLK
Sbjct: 70  --QKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLK 129

Query: 127 KKPEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYT 185
           KK +AQ++E++ +EKLI EAYS IDKAV+V  LH+NT ARRKSRLARRKKAVEIHHGWY 
Sbjct: 130 KKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYV 189

[Close]
BLAST of Bhi09G002831 vs. ExPASy Swiss-Prot
Match: A7HJB0 (30S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 80  SAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR R +EKRR+ NKA K+ +K +IK VL A+        AQ +    I +L  +A S
Sbjct: 6   SAEKRVRVSEKRRVLNKAYKTSMKNKIKAVLAAI--------AQKKSAEEIMELFRKAQS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKA 169
            IDKA + G +H+N A+RRKSRLA + KA
Sbjct: 66  AIDKAAKSGAIHKNQASRRKSRLAVKVKA 86

[Close]
BLAST of Bhi09G002831 vs. ExPASy Swiss-Prot
Match: B1XHW6 (30S ribosomal protein S20 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rpsT PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.1e-09
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 0 

Query: 80  SAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR + AE+ R+ NK+ KS +KT  KK L+A++     P A ++     +K ++  YS
Sbjct: 6   SAIKRIQTAERNRLRNKSYKSAVKTLTKKCLQAIEQYAAAPSADAQ--AEAQKYLSATYS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKK 168
            IDKAV+ G  H NTAAR+K+RLA+  K
Sbjct: 66  KIDKAVKRGVYHHNTAARKKARLAKEFK 91

[Close]
BLAST of Bhi09G002831 vs. ExPASy Swiss-Prot
Match: B0C2C8 (30S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rpsT PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08
Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 0 

Query: 80  SAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKPEAQSEEVLPIEKLIAEAYS 139
           SA KR   AE+ R+ NKA KS IKT  K+   A+D  K  P    +++  I+  ++  YS
Sbjct: 6   SAKKRILIAERNRLQNKAYKSAIKTFTKRFQAAVDDYKSNP--SDDQLAAIQNEMSVTYS 65

Query: 140 VIDKAVRVGTLHRNTAARRKSRLARRKKA 169
            IDKAV+VG  HRNT AR+K+ LAR  KA
Sbjct: 66  KIDKAVKVGVFHRNTGARKKAGLARILKA 92

[Close]
BLAST of Bhi09G002831 vs. ExPASy TrEMBL
Match: A0A6J1IG57 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111476939 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.4e-75
Identity = 165/185 (89.19%), Postives = 175/185 (94.59%), Query Frame = 0 

Query: 1   MAATA-VSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSK 60
           MAATA +SCF+LPSKFRNLSLNASSS +P SPSS TLRSLSFSSN SVSAFSNGCL++SK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMPLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKR RQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAAA 185
           SPAAA
Sbjct: 181 SPAAA 184

[Close]
BLAST of Bhi09G002831 vs. ExPASy TrEMBL
Match: A0A6J1F6F1 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442556 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.0e-74
Identity = 164/185 (88.65%), Postives = 174/185 (94.05%), Query Frame = 0 

Query: 1   MAATA-VSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSK 60
           MAATA +SCF+LPSKFRNLSLNASSS +  SPSS TLRSLSFSSN SVSAFSNGCL++SK
Sbjct: 1   MAATAIISCFALPSKFRNLSLNASSSSMLLSPSSSTLRSLSFSSNVSVSAFSNGCLSISK 60

Query: 61  AQRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKK 120
           AQRP RYSVVCEAAPK KADSAAKR RQAEKRR+YNKARKSEIKTR+KKV+EALD LKKK
Sbjct: 61  AQRPFRYSVVCEAAPK-KADSAAKRARQAEKRRVYNKARKSEIKTRMKKVMEALDDLKKK 120

Query: 121 PEAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPD 180
           PEAQSEEVLPIEKLIAEA+SVIDKAV+VGTLHRNTAARRKSRLARRKKAVEIHHGWYTP 
Sbjct: 121 PEAQSEEVLPIEKLIAEAFSVIDKAVKVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPA 180

Query: 181 SPAAA 185
           SPAAA
Sbjct: 181 SPAAA 184

[Close]
BLAST of Bhi09G002831 vs. ExPASy TrEMBL
Match: A0A5A7VMD2 (30S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001620 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.4e-74
Identity = 160/184 (86.96%), Postives = 168/184 (91.30%), Query Frame = 0 

Query: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60
           MAA AV+CF+L SKF NLSLN  SS IPA+PSS TLRSLSFSSN S+SAFSNGCL+M K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R  RYSVVCEAAPK KADSAAKR RQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Bhi09G002831 vs. ExPASy TrEMBL
Match: A0A1S3CJU9 (30S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.4e-74
Identity = 160/184 (86.96%), Postives = 168/184 (91.30%), Query Frame = 0 

Query: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60
           MAA AV+CF+L SKF NLSLN  SS IPA+PSS TLRSLSFSSN S+SAFSNGCL+M K 
Sbjct: 1   MAAAAVTCFALSSKFGNLSLNGFSSSIPAAPSSSTLRSLSFSSNISLSAFSNGCLSMRKT 60

Query: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           +R  RYSVVCEAAPK KADSAAKR RQAEKRRIYNKARKSEIKTR+KKVLEALDGLKKK 
Sbjct: 61  ERMHRYSVVCEAAPKTKADSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKA 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLPIEKL+AEAYSVIDKAVR GTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS
Sbjct: 121 EAQSEEVLPIEKLMAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

[Close]
BLAST of Bhi09G002831 vs. ExPASy TrEMBL
Match: A0A6J1IVC5 (30S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480940 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 7.5e-74
Identity = 157/184 (85.33%), Postives = 168/184 (91.30%), Query Frame = 0 

Query: 1   MAATAVSCFSLPSKFRNLSLNASSSCIPASPSSLTLRSLSFSSNTSVSAFSNGCLTMSKA 60
           MAA + SCF+LPSKF NLSLNASSSC+P S SSL LRSLSFSSN SVSAFS+GCL+MS A
Sbjct: 1   MAAASFSCFALPSKFGNLSLNASSSCLPVSSSSLALRSLSFSSNVSVSAFSDGCLSMSGA 60

Query: 61  QRPSRYSVVCEAAPKNKADSAAKRTRQAEKRRIYNKARKSEIKTRIKKVLEALDGLKKKP 120
           QRP RYSVVCEAAP+ KADSAAKR RQAEKRR YNKARKSEI+TR+KK +EALD LKKKP
Sbjct: 61  QRPLRYSVVCEAAPQKKADSAAKRARQAEKRRTYNKARKSEIRTRMKKAMEALDDLKKKP 120

Query: 121 EAQSEEVLPIEKLIAEAYSVIDKAVRVGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDS 180
           EAQSEEVLP+EKLIAEAYSVIDKAV+VGTLHRNTAA RKSRLARRKKAVEIHHGWYTP S
Sbjct: 121 EAQSEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTAAHRKSRLARRKKAVEIHHGWYTPAS 180

Query: 181 PAAA 185
           PAAA
Sbjct: 181 PAAA 184

The following BLAST results are available for this feature:
BLAST of Bhi09G002831 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15190.11.7e-4662.03chloroplast 30S ribosomal protein S20, putative [more]
BLAST of Bhi09G002831 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821301.4e-4562.9230S ribosomal protein S20, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS20 P... [more]
Q9ASV62.4e-4562.0330S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS2... [more]
A7HJB04.8e-0947.1930S ribosomal protein S20 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5... [more]
B1XHW68.1e-0944.3230S ribosomal protein S20 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P... [more]
B0C2C81.1e-0847.1930S ribosomal protein S20 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ... [more]
BLAST of Bhi09G002831 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IG571.4e-7589.1930S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1F6F12.0e-7488.6530S ribosomal protein S20, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A5A7VMD24.4e-7486.9630S ribosomal protein S20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CJU94.4e-7486.9630S ribosomal protein S20, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501779... [more]
A0A6J1IVC57.5e-7485.3330S ribosomal protein S20, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 99..119
NoneNo IPR availablePANTHERPTHR33398:SF530S RIBOSOMAL PROTEIN S20, CHLOROPLASTICcoord: 1..183
IPR002583Ribosomal protein S20PFAMPF01649Ribosomal_S20pcoord: 79..165
e-value: 4.6E-23
score: 81.6
IPR002583Ribosomal protein S20TIGRFAMTIGR00029TIGR00029coord: 78..164
e-value: 4.5E-18
score: 63.6
IPR002583Ribosomal protein S20PANTHERPTHR3339830S RIBOSOMAL PROTEIN S20coord: 1..183
IPR002583Ribosomal protein S20HAMAPMF_00500Ribosomal_S20coord: 57..168
score: 16.132696
IPR036510Ribosomal protein S20 superfamilyGENE3D1.20.58.110Ribosomal protein S20coord: 78..184
e-value: 7.9E-39
score: 134.2
IPR036510Ribosomal protein S20 superfamilySUPERFAMILY46992Ribosomal protein S20coord: 79..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M002831Bhi09M002831mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070181 small ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding