Bhi09G000324 (gene) Wax gourd (B227) v1

Overview
NameBhi09G000324
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
Description60S ribosomal protein L28-2 isoform B
Locationchr9: 8298289 .. 8298702 (+)
RNA-Seq ExpressionBhi09G000324
SyntenyBhi09G000324
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAAAGTCAAAGGACGTGCCTATACAACACGTACTTGGACAACATCTGTTGCTTGTCCTAGTTGCCATCTCTGCCATATAAATATGACCCTAAACCAGATTGTCTCTACGGTTGTGCCAAATCATTGGCTGCTAGGCGAGCAGCCAAGAAAAAAGACCATGTCTGTGAAGAAGTCTCTCTCTCTCACAAAAGCCGAGGAGGCCAAGCACCTCAAAAGGCATGAAGCTGCCAGAAGGCGCAGGAGATCTTTTGATCTCTGTTTTTCGTACCCAGAGCTACCAATGGAACGTGGGAAGTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGGCTGGTATCAAGAAATGGGCTAAAGCTGTGGTGGCTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCGCTAA

mRNA sequence

ATGTTCAAAGTCAAAGGACGTGCCTATACAACACGTACTTGGACAACATCTGTTGCTTGTCCTAGTTGCCATCTCTGCCATATAAATATGACCCTAAACCAGATTGTCTCTACGGTTGTGCCAAATCATTGGCTGCTAGGCGAGCAGCCAAGAAAAAAGACCATGTCTGTGAAGAAGTCTCTCTCTCTCACAAAAGCCGAGGAGGCCAAGCACCTCAAAAGGCATGAAGCTGCCAGAAGGCGCAGGAGATCTTTTGATCTCTGTTTTTCGTACCCAGAGCTACCAATGGAACGTGGGAAGTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGGCTGGTATCAAGAAATGGGCTAAAGCTGTGGTGGCTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCGCTAA

Coding sequence (CDS)

ATGTTCAAAGTCAAAGGACGTGCCTATACAACACGTACTTGGACAACATCTGTTGCTTGTCCTAGTTGCCATCTCTGCCATATAAATATGACCCTAAACCAGATTGTCTCTACGGTTGTGCCAAATCATTGGCTGCTAGGCGAGCAGCCAAGAAAAAAGACCATGTCTGTGAAGAAGTCTCTCTCTCTCACAAAAGCCGAGGAGGCCAAGCACCTCAAAAGGCATGAAGCTGCCAGAAGGCGCAGGAGATCTTTTGATCTCTGTTTTTCGTACCCAGAGCTACCAATGGAACGTGGGAAGTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGGCTGGTATCAAGAAATGGGCTAAAGCTGTGGTGGCTTATGCCCGCACAGTAAGCAATCGCTTTGGAAGCTGGCGTCGCTAA

Protein sequence

MFKVKGRAYTTRTWTTSVACPSCHLCHINMTLNQIVSTVVPNHWLLGEQPRKKTMSVKKSLSLTKAEEAKHLKRHEAARRRRRSFDLCFSYPELPMERGKSLKEMDSEKLKAGIKKWAKAVVAYARTVSNRFGSWRR
Homology
BLAST of Bhi09G000324 vs. ExPASy TrEMBL
Match: A0A5A7UXU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00720 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.5e-31
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 0

Query: 55  MSVKKSLSLTKAEEAKHLKRHEAARRRRRSFDLCFSYPELPMERGKSLKEMDSEKLKAGI 114
           MSVKKSLSLTKAEEAK L RHEAAR+RRRSFDLCFSYPELPMERGKSLKEM+SEKLK GI
Sbjct: 1   MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPELPMERGKSLKEMNSEKLKTGI 60

Query: 115 KKWAKAVVAYARTVSNRFGSWRR 138
           KKWAKAVVAYARTVS+RFGS RR
Sbjct: 61  KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of Bhi09G000324 vs. ExPASy TrEMBL
Match: A0A0A0KB03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.6e-31
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0

Query: 55  MSVKKSLSLTKAEEAKHLKRHEAARRRRRSFDLCFSYPELPMERGKSLKEMDSEKLKAGI 114
           MSVKKSLSLTKAEEAK L RHEAAR+RRRSFDLCFSYPE+PMERGKSLKEM+SEKLK GI
Sbjct: 1   MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPEIPMERGKSLKEMNSEKLKTGI 60

Query: 115 KKWAKAVVAYARTVSNRFGSWRR 138
           KKWAKAVVAYARTVS+RFGS RR
Sbjct: 61  KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of Bhi09G000324 vs. ExPASy TrEMBL
Match: A0A2P5FE88 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080350 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 52/82 (63.41%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 55  MSVKKSLSLTKAEEAKHLKRHEAARRRRRSFDLCFSYPELPMERGKSLKEMDSEKLKAGI 114
           MSVKK+LSL + E A   K H+ + RR + +  CFS+ ELPMERGK+LKEMDS KLK  I
Sbjct: 1   MSVKKTLSLNRGEAA---KGHQISVRRGK-YGRCFSFVELPMERGKTLKEMDSNKLKFEI 60

Query: 115 KKWAKAVVAYARTVSNRFGSWR 137
           K+WAKAVVAYAR VS RFG  R
Sbjct: 61  KRWAKAVVAYARQVSGRFGGTR 78

BLAST of Bhi09G000324 vs. ExPASy TrEMBL
Match: A0A498IZM5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000327 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14
Identity = 51/83 (61.45%), Postives = 59/83 (71.08%), Query Frame = 0

Query: 54  TMSVKKSLSLTKAEEAKHLKRHEAARRRRRSFDLCFSYPELPMERGKSLKEMDSEKLKAG 113
           T   +K+LSL   E  K      AA+R R  FD CFS+ E+  E GKSLKEMDSEKLK+G
Sbjct: 21  TKKTRKTLSLNNGEAGKSSGDVVAAKRTR--FDRCFSFMEVSTEPGKSLKEMDSEKLKSG 80

Query: 114 IKKWAKAVVAYARTVSNRFGSWR 137
           IK+WAKAVVAYAR VS+RFGS R
Sbjct: 81  IKRWAKAVVAYARQVSDRFGSSR 101

BLAST of Bhi09G000324 vs. ExPASy TrEMBL
Match: B9GH52 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G194100 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.8e-14
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 0

Query: 28  INMTLNQIVSTVVPNHWLLGEQPRKKT---MSVKKSLSLTKAEEAKHLKRHEAARRRRRS 87
           ++M    I++     H    ++P K T   MS+KK+LSLT    +K +K  + + +RRRS
Sbjct: 1   MSMVFVYILAANYLQHCCCSQKPAKSTTLSMSIKKTLSLT----SKAVKDDQVSEKRRRS 60

Query: 88  FDLCFSYPELPMERGKSLKEMDSEKLKAGIKKWAKAVVAYARTVSNRFGSWRR 138
            D CFS+ E+ +E GKSLK++DS K K  IK+WA+AVVAYAR VS+RFGS R+
Sbjct: 61  -DRCFSFKEISIEPGKSLKDLDSNKFKIDIKRWARAVVAYARQVSSRFGSARK 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UXU01.5e-3191.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KB032.6e-3190.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1[more]
A0A2P5FE881.3e-1463.41Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080350 PE=4 SV... [more]
A0A498IZM53.8e-1461.45Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000327 PE=4 SV=1[more]
B9GH523.8e-1446.90Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G194100 PE=4 ... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36484:SF2OS01G0558700 PROTEINcoord: 55..137
NoneNo IPR availablePANTHERPTHR36484OS01G0558700 PROTEINcoord: 55..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi09M000324Bhi09M000324mRNA