Bhi08G001300 (gene) Wax gourd (B227) v1

Overview
NameBhi08G001300
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRING-type domain-containing protein
Locationchr8: 45602076 .. 45602771 (-)
RNA-Seq ExpressionBhi08G001300
SyntenyBhi08G001300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATGGAGATTGTTGTATCAGCTATTCTTTTGGTAGTGGGGATAGCTGTGTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTGAGAGGAGAAGGAGAAGGGATTAATAATGGTAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAATACAAAATGAGGGATTTAGAAATGGAATGTGTGGTGTGTTTGGAGAATTTCAAAACTGGGGAAAGATGTAGATTGTTGCCTAATTGTAACCATACTTTTCATGTCCAATGCATAGATTCTTGGCTTTTAAATACACCCATTTGCCCTATTTGTAGAACTTTTGCTGCTGCTCTTCCTAAAATTTCCTTCATTCAATTGAATTGATTCATATTCTGATTGAGGGTAGTATCTAGTATGTGTGTTTTGCCGCCGCCACTGGTGGCCGGAGGAACTTGATGTTCACAAGAAGCGCCGCCGTCTACTGAATTTGGGGAAAATGTTGAAGGCTTTATCAAAGAGGAGGGGCCGAGAAGAGGGTAAAGTTGGTGTTAATGGAGAATTCTTTTTTTGTGGACGGGGATTCTCGTCGAATATTTTTCTCGTCTGCAACTCTTTTCTTTTTCTTTTTTTTTTTTTCCTGTTTTTGTTTTCTTGTTATTATGTTTTGGTTTATGTTGTTCAGTTTTGTAA

mRNA sequence

ATGGTTATGGAGATTGTTGTATCAGCTATTCTTTTGGTAGTGGGGATAGCTGTGTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTGAGAGGAGAAGGAGAAGGGATTAATAATGGTAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAATACAAAATGAGGGATTTAGAAATGGAATGTGTGTATCTAGTATGTGTGTTTTGCCGCCGCCACTGGTGGCCGGAGGAACTTGATGTTCACAAGAAGCGCCGCCGTCTACTGAATTTGGGGAAAATGTTGAAGGCTTTATCAAAGAGGAGGGGCCGAGAAGAGGTTTTGTAA

Coding sequence (CDS)

ATGGTTATGGAGATTGTTGTATCAGCTATTCTTTTGGTAGTGGGGATAGCTGTGTTGGTAGTGATTCATGTGTGTATTGTTGGGAGAGCTTTGAGAGGAGAAGGAGAAGGGATTAATAATGGTAATAGTAATTATGGGATGAAGAGATTTTCAAAGGAGGATTTGGAGAAGCTTCCTTGTTATGAATACAAAATGAGGGATTTAGAAATGGAATGTGTGTATCTAGTATGTGTGTTTTGCCGCCGCCACTGGTGGCCGGAGGAACTTGATGTTCACAAGAAGCGCCGCCGTCTACTGAATTTGGGGAAAATGTTGAAGGCTTTATCAAAGAGGAGGGGCCGAGAAGAGGTTTTGTAA

Protein sequence

MVMEIVVSAILLVVGIAVLVVIHVCIVGRALRGEGEGINNGNSNYGMKRFSKEDLEKLPCYEYKMRDLEMECVYLVCVFCRRHWWPEELDVHKKRRRLLNLGKMLKALSKRRGREEVL
Homology
BLAST of Bhi08G001300 vs. ExPASy TrEMBL
Match: A0A6J1JUU5 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-12
Identity = 55/81 (67.90%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MVMEIVVSAILLVVGIAVLVVIHVCIVGRALRGEGEGINNGNSNYGMKRFSKEDLEKLPC 60
          MVMEIVVSA+LL+VGIAVLVVIHVCIVGRA RGE EGI    SN G K  S +DLEKLPC
Sbjct: 1  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGI--WRSNLG-KNLSNQDLEKLPC 60

Query: 61 YEYKMRDLE-MECVYLVCVFC 81
          YEYK  + +    V L CV C
Sbjct: 61 YEYKSGEKQSTNGVDLECVVC 78

BLAST of Bhi08G001300 vs. ExPASy TrEMBL
Match: A0A6J1GQW8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-12
Identity = 55/81 (67.90%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 1  MVMEIVVSAILLVVGIAVLVVIHVCIVGRALRGEGEGINNGNSNYGMKRFSKEDLEKLPC 60
          MVMEIVVSA+LL+VGIAVLVVIHVCIVGRA RGE EGI    SN G K  S +DLEKLPC
Sbjct: 1  MVMEIVVSAVLLLVGIAVLVVIHVCIVGRAFRGEREGI--WRSNLG-KNLSNQDLEKLPC 60

Query: 61 YEYKMRDLE-MECVYLVCVFC 81
          YEYK  + +    V L CV C
Sbjct: 61 YEYKSGEKQSTNGVDLECVVC 78

BLAST of Bhi08G001300 vs. ExPASy TrEMBL
Match: W9RES1 (RING-H2 finger protein ATL80 OS=Morus notabilis OX=981085 GN=L484_014996 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.2e-09
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 0

Query: 3  MEIVVSAILLVVGIAVLVVIHVCIVGRALRGEGEGINNGNSNYGM----KRFSKEDLEKL 62
          MEIV+S ILL VGIAVLVVIH+CIVGRA     +G NN N+N  +    KR S EDL+ +
Sbjct: 1  MEIVISVILLFVGIAVLVVIHICIVGRAFGRGNQGANNNNNNNNILGSNKRMSSEDLKMI 60

Query: 63 PCYEYKMRDLEMECVYLVCVFC 81
          PC++Y M   E E  ++ C  C
Sbjct: 61 PCFDYNMSG-EKESSFVDCAVC 81

BLAST of Bhi08G001300 vs. ExPASy TrEMBL
Match: A0A059A647 (RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02856 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.1e-09
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 0

Query: 1  MVMEIVVSAILLVVGIAVLVVIHVCIVGRALRGEGEGINNG----NSNYGMKRFSKEDLE 60
          MVMEI++S +LL +GIAVLVVIHVCIVGRA R EG G + G    NSN    + S EDL+
Sbjct: 1  MVMEIIISVVLLFMGIAVLVVIHVCIVGRAFR-EGGGFSRGLVQRNSNSAASKLSSEDLK 60

Query: 61 KLPCYEY----KMRDLEMECVYLVCV 79
          KLPC+EY    K  D + +C   VC+
Sbjct: 61 KLPCFEYGSGDKASDRDEDCA--VCL 83

BLAST of Bhi08G001300 vs. ExPASy TrEMBL
Match: A0A5C7H0G4 (RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_022823 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.1e-08
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 0

Query: 1  MVMEIVVSAILLVVGIAVLVVIHVCIVGRALRGE------GEGINNGNSNYGMKRFSKED 60
          MVMEI++S  LL VGIA LVVIHVCIVGRA RG        +GI  G    G K  S ED
Sbjct: 1  MVMEILISLALLFVGIAALVVIHVCIVGRAFRGSYDNGRFVQGIRGGGFGGGNKTMSNED 60

Query: 61 LEKLPCYEYKMRDLE-------MECVYLVCVF 80
          L+KLPC+EYK+ + E       ++CV  + +F
Sbjct: 61 LKKLPCFEYKVGEAETSRSSSTVDCVICLEIF 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JUU52.3e-1267.90RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111489951 PE... [more]
A0A6J1GQW82.3e-1267.90RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111456690 ... [more]
W9RES13.2e-0952.44RING-H2 finger protein ATL80 OS=Morus notabilis OX=981085 GN=L484_014996 PE=4 SV... [more]
A0A059A6477.1e-0954.65RING-type domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K0... [more]
A0A5C7H0G42.1e-0850.00RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_02282... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR45768:SF13TRANSCRIPTION FACTOR C2H2 FAMILY-RELATEDcoord: 1..81
NoneNo IPR availablePANTHERPTHR45768E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKEcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi08M001300Bhi08M001300mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane