Bhi08G001243 (gene) Wax gourd (B227) v1

Overview


Name	Bhi08G001243
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Protoheme IX farnesyltransferase
Location	chr8: 43617949 .. 43618527 (+)
RNA-Seq Expression	Bhi08G001243
Synteny	Bhi08G001243

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCTTACAAAGATCGTAACAAAATCTTCAATAAAATCAAACTATTCCCCTGTAAATAATATTATCATCAACAGCCTCCTCCTCTGTTTTCTTACAGCTCTGTTTTGTAGTCTCTTATGGATTATTCCCTTTCTCCTCCCTCCTACCTCTCTTCTCTCTGTTTTTCTCTCTTCTCTCTCTCAACCCTCGAATTACCCAATAAATTTTCCCACTCCCACCTGCGTTTTCATCCTCGGAAATCTCATCGTCGTCCTTCTCATCGGAGAATCCAAAATTTTTTCCTCAAAAACTCCGGATCCTTTTTGTACTGATGTATGTTTTTACGAGGTGGGTTTTCGAGAGACTTCGATTAGTGAAGGGGATGAAAAGAGGGGTTCTGAGAGCTTTGATGGGAAGGAGGAATGGGAGATGGAATCGGTCAATTCCGAGGAATTGAGTCAAAGGGCTGATGATTTCATTGCCAGAGTCAATATGCAGAGGAAGGTTGAAGCTATGATGGTTGCGTATTGTTGTGAATTGGCGACGATGAAGAAAAGATATAGAAAGAAAGTTTATAAGCCTTTTGTAATTTACTAG

mRNA sequence

ATGGGTCTTACAAAGATCGTAACAAAATCTTCAATAAAATCAAACTATTCCCCTGTGGGTTTTCGAGAGACTTCGATTAGTGAAGGGGATGAAAAGAGGGGTTCTGAGAGCTTTGATGGGAAGGAGGAATGGGAGATGGAATCGGTCAATTCCGAGGAATTGAGTCAAAGGGCTGATGATTTCATTGCCAGAGTCAATATGCAGAGGAAGGTTGAAGCTATGATGGTTGCGTATTGTTGTGAATTGGCGACGATGAAGAAAAGATATAGAAAGAAAGTTTATAAGCCTTTTGTAATTTACTAG

Coding sequence (CDS)

ATGGGTCTTACAAAGATCGTAACAAAATCTTCAATAAAATCAAACTATTCCCCTGTGGGTTTTCGAGAGACTTCGATTAGTGAAGGGGATGAAAAGAGGGGTTCTGAGAGCTTTGATGGGAAGGAGGAATGGGAGATGGAATCGGTCAATTCCGAGGAATTGAGTCAAAGGGCTGATGATTTCATTGCCAGAGTCAATATGCAGAGGAAGGTTGAAGCTATGATGGTTGCGTATTGTTGTGAATTGGCGACGATGAAGAAAAGATATAGAAAGAAAGTTTATAAGCCTTTTGTAATTTACTAG

Protein sequence

MGLTKIVTKSSIKSNYSPVGFRETSISEGDEKRGSESFDGKEEWEMESVNSEELSQRADDFIARVNMQRKVEAMMVAYCCELATMKKRYRKKVYKPFVIY

Homology

[Close]

BLAST of Bhi08G001243 vs. ExPASy TrEMBL
Match: A0A5A7UM42 (Protoheme IX farnesyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G004840 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 58/74 (78.38%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 21  FRETSISEGDEKRGSESFDGKEEWEMESVNSEELSQRADDFIARVNMQRKVEAMMVAYCC 80
           F ETS+SEGD+KR SESFD ++EWE+ESVNSEELS+RADDFIARVNMQRK+EAMMV YCC
Sbjct: 115 FLETSVSEGDQKRASESFDEEDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMVVYCC 174

Query: 81  ELATMKKRYRKKVY 95
           ++ T KKRYRKK Y
Sbjct: 175 DMMTTKKRYRKKYY 188

[Close]

BLAST of Bhi08G001243 vs. ExPASy TrEMBL
Match: A0A1S3BFF3 (uncharacterized protein LOC103489033 OS=Cucumis melo OX=3656 GN=LOC103489033 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.5e-23
Identity = 58/74 (78.38%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 21  FRETSISEGDEKRGSESFDGKEEWEMESVNSEELSQRADDFIARVNMQRKVEAMMVAYCC 80
           F ETS+SEGD+KR SESFD ++EWE+ESVNSEELS+RADDFIARVNMQRK+EAMMV YCC
Sbjct: 115 FLETSVSEGDQKRASESFDEEDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMVVYCC 174

Query: 81  ELATMKKRYRKKVY 95
           ++ T KKRYRKK Y
Sbjct: 175 DMMTTKKRYRKKYY 188

[Close]

BLAST of Bhi08G001243 vs. ExPASy TrEMBL
Match: A0A0A0LWQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051640 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.3e-23
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 21  FRETSISEGDEKRGSESFDGKEEWEMESVNSEELSQRADDFIARVNMQRKVEAMMVAYCC 80
           FRET +SEGD KR SESFD ++EWE+ESVNSEELS+RADDFIARVNMQRK+EAMMV YCC
Sbjct: 98  FRETLVSEGDHKRTSESFDEEDEWEIESVNSEELSKRADDFIARVNMQRKIEAMMVMYCC 157

Query: 81  ELATMKKRYRKKVY 95
           ++ TMKKRY KK Y
Sbjct: 158 DMMTMKKRYTKKYY 171

[Close]

BLAST of Bhi08G001243 vs. ExPASy TrEMBL
Match: A0A6J1CA01 (uncharacterized protein LOC111008810 OS=Momordica charantia OX=3673 GN=LOC111008810 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.3e-07
Identity = 37/73 (50.68%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 21  FRETSISEGDEKRGSESFDGKEEWEMESV-NSEELSQRADDFIARVNMQRKVEAMMVAYC 80
           F E SI E ++    +  +  +EWEM ++ + EELS+RADDFIARVNMQRK+EA +++Y 
Sbjct: 88  FGECSIGEMED--DCDEGERIDEWEMSNLGDREELSRRADDFIARVNMQRKIEATILSYG 147

Query: 81  CELATMKKRYRKK 93
           CE  TM K+YR++
Sbjct: 148 CEWTTMNKKYRRR 158

The following BLAST results are available for this feature:

BLAST of Bhi08G001243 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi08G001243 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi08G001243 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UM42	2.5e-23	78.38	Protoheme IX farnesyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3BFF3	2.5e-23	78.38	uncharacterized protein LOC103489033 OS=Cucumis melo OX=3656 GN=LOC103489033 PE=...	[more]
A0A0A0LWQ9	7.3e-23	78.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051640 PE=4 SV=1	[more]
A0A6J1CA01	4.3e-07	50.68	uncharacterized protein LOC111008810 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..43
None	No IPR available	PANTHER	PTHR35762	TRANSMEMBRANE PROTEIN	coord: 19..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi08M001243	Bhi08M001243	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034219	carbohydrate transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051119	sugar transmembrane transporter activity