Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTACAAGCCCAATCTGAAAGCCCCAAGGAAAATAAATAAAACAAATAAACCCTAAATATCAGTCATCCTCACGCTGAACTTCCTCTTCTTCACATTTCTTCCACTAATCCCCTCCGTCTATCCCTACGCCCCTTGTGCCGATCATTCTCGCTGGGCCTCTGCCTTGCCGTCGCCGGTCAGTGTCAACCCTTTAGAAATTGATTCATAGCTCGTTCTTTAATGTTGCCTTTTTCTCTTATTGAAAGTATTGGAACAAATCACTCCAATAGGTTTTCTCCTGTTTCAACTGCTAAAAATGGATTGCTTATTTGTTGTTTTCCTGCTCGTAATGATTGGGTTAAATTATGAATTTAGTCTTTCAACAATCATTTTTGTGACTATTTGGTTCATGAACTTAAAATTGTAAGTGATAAGTTTATGAAATTTTAATAGAAGTGTTCAATAAATCTCTAAACGGTTGAACTTTAAAAAGTGTTTAATAATAGATGTTAAGATTCATTTTTATCTTGGATCTCGTTTGAATCTAATAGAACTATTTAAACATCTTTTAAATTTAGGAATTTTTTAAATACAACTTTGAAAGTTTAGGGTCTCATTAGATATAAAATTCAATTCTATATCAGCTCAATTAGTTAATTTTAAAATTTTTAAATATGTCAAAGGCTTATTGGATACAACATTGAAAGTTAGGGTTGAAATTAAACCAACTTGAAAGTTTAGAGATTGGTGATTTAGCATGATATTGGAATAGAAGTCCTATGTTTAAATCACATAATTTCATTTAACTTAGAATTTCCACGGTTTCATTGCAAATAGCTGCTTGAATATATTTTCTTATACTCATTTTCTTCATGCTAATTCTATAATATAGCATATCAAGAACTAGCTTTCAAAATAATGACCTGTTGAAAGACACTTGAGAGATGAGACAATCCCTCGACTCTAAAGGCCTTATTGAGAGGCTAGAATGTAATAGGTTTATAATGAAGCCTAATTGGGTATTTTGGGCTCGGTTTGTAATTCTTATTACATTCTCTTCCACCGTTGATTCTATTTCAACTTTGATTTTAGCATTTTATCATAATCTTGGTTTCCAGTAATCCTGATTACATTCACAAAGATCCTAAATGACTGGATGAGTTCTTTTTTTTTTTTTTTTTTCTCTTTTTAGCGTGTTAGGAAATGGGTGACAAGAAAAAGAAAGCTACCATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTCAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATACGATCCCCGGGTCAATCGACATGTTTTGTTTACGGAAGCAAAAATGAAGTGAAAGAAGAGAAAAAAAAATCGTCCTTTTAGCTTGGACCTATTCTTCTTCCAAATTTCGTTTGGTCCTTAGTTTTTGGAGGCTTAGCAATTAGTCTTCTCCAATTTAGACTGATGTTTCACATTTGCTAGTTTTTCCCTTGGCTCATCTTCATCCTTTTGTGAAACACATCAAATTCTATGGCCGGGAATTGTTTGCCCCCTTGATCTCTTCTGGTCAAATGTGTTGAGATAAATTATAAGATATAGTTTTGAGTTATTAAGCTTGTTACATCTTAGACTTGATTTATTTTTATTTGTAAAACAGAAAAATTCTATGGGTATGAATTCTTTGCCCCTTGATATCTTCCAGTGGAATGTGTTAAAGAACTTACATAATATACTTTTGACTTGT
mRNA sequence
CATTTACAAGCCCAATCTGAAAGCCCCAAGGAAAATAAATAAAACAAATAAACCCTAAATATCAGTCATCCTCACGCTGAACTTCCTCTTCTTCACATTTCTTCCACTAATCCCCTCCGTCTATCCCTACGCCCCTTGTGCCGATCATTCTCGCTGGGCCTCTGCCTTGCCGTCGCCGCGTGTTAGGAAATGGGTGACAAGAAAAAGAAAGCTACCATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTCAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATACGATCCCCGGGTCAATCGACATGTTTTGTTTACGGAAGCAAAAATGAAGTGAAAGAAGAGAAAAAAAAATCGTCCTTTTAGCTTGGACCTATTCTTCTTCCAAATTTCGTTTGGTCCTTAGTTTTTGGAGGCTTAGCAATTAGTCTTCTCCAATTTAGACTGATGTTTCACATTTGCTAGTTTTTCCCTTGGCTCATCTTCATCCTTTTGTGAAACACATCAAATTCTATGGCCGGGAATTGTTTGCCCCCTTGATCTCTTCTGGTCAAATGTGTTGAGATAAATTATAAGATATAGTTTTGAGTTATTAAGCTTGTTACATCTTAGACTTGATTTATTTTTATTTGTAAAACAGAAAAATTCTATGGGTATGAATTCTTTGCCCCTTGATATCTTCCAGTGGAATGTGTTAAAGAACTTACATAATATACTTTTGACTTGT
Coding sequence (CDS)
ATGGGTGACAAGAAAAAGAAAGCTACCATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTCAAAAGAAAGCCAACCAAAATTACAGAGAAGCTCGAGTTCCGAAAATACGATCCCCGGGTCAATCGACATGTTTTGTTTACGGAAGCAAAAATGAAGTGA
Protein sequence
MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Homology
BLAST of Bhi08G000995 vs. TAIR 10
Match:
AT3G06320.1 (Ribosomal protein L33 family protein )
HSP 1 Score: 99.0 bits (245), Expect = 1.3e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0
Query: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 58
MGDK+KK MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1 MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58
BLAST of Bhi08G000995 vs. TAIR 10
Match:
AT5G18790.1 (Ribosomal protein L33 family protein )
HSP 1 Score: 99.0 bits (245), Expect = 1.3e-21
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 0
Query: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK 58
MGDK+KK MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Sbjct: 1 MGDKRKKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQKMK 58
BLAST of Bhi08G000995 vs. ExPASy Swiss-Prot
Match:
Q2W1A2 (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rpmG PE=3 SV=1)
HSP 1 Score: 71.6 bits (174), Expect = 3.2e-12
Identity = 36/53 (67.92%), Postives = 42/53 (79.25%), Query Frame = 0
Query: 6 KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
K AT+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Sbjct: 3 KPATILIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAKIK 55
BLAST of Bhi08G000995 vs. ExPASy Swiss-Prot
Match:
B6IN38 (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmG PE=3 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 5.4e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0
Query: 6 KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP +HV+F EAKMK
Sbjct: 3 KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAKMK 55
BLAST of Bhi08G000995 vs. ExPASy Swiss-Prot
Match:
B3CRY6 (50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=rpmG PE=3 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.0e-11
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 0
Query: 5 KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
+KK + ++LVS+AGTG F+VK R P TEKL FRKYDP+V +HV FTEAK+K
Sbjct: 3 RKKKKVLVKLVSSAGTGVFWVKQRNPKTQTEKLSFRKYDPKVRKHVQFTEAKIK 56
BLAST of Bhi08G000995 vs. ExPASy Swiss-Prot
Match:
A8GY80 (50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=rpmG PE=3 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.0e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0
Query: 5 KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
KK + +RLVS AGTGFF V KR P TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3 KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56
BLAST of Bhi08G000995 vs. ExPASy Swiss-Prot
Match:
Q1RGQ4 (50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rpmG PE=3 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.0e-11
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 0
Query: 5 KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
KK + +RLVS AGTGFF V KR P TEKL FRKYDP+V +HVLF E K+K
Sbjct: 3 KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56
BLAST of Bhi08G000995 vs. ExPASy TrEMBL
Match:
A0A6J1KVU2 (uncharacterized protein LOC111499157 OS=Cucurbita maxima OX=3661 GN=LOC111499157 PE=3 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 2.4e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
Query: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57
BLAST of Bhi08G000995 vs. ExPASy TrEMBL
Match:
A0A0A0LVW9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538800 PE=3 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 2.4e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
Query: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57
BLAST of Bhi08G000995 vs. ExPASy TrEMBL
Match:
A0A6J1CA39 (uncharacterized protein LOC111009599 OS=Momordica charantia OX=3673 GN=LOC111009599 PE=3 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 2.4e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
Query: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57
BLAST of Bhi08G000995 vs. ExPASy TrEMBL
Match:
A0A6J1H6A1 (uncharacterized protein LOC111459991 OS=Cucurbita moschata OX=3662 GN=LOC111459991 PE=3 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 2.4e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
Query: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57
BLAST of Bhi08G000995 vs. ExPASy TrEMBL
Match:
A0A1S3BBV4 (50S ribosomal protein L33-like OS=Cucumis melo OX=3656 GN=LOC103488236 PE=3 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 2.4e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0
Query: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 58
MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Sbjct: 1 MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK 57
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
AT3G06320.1 | 1.3e-21 | 86.21 | Ribosomal protein L33 family protein | [more] |
AT5G18790.1 | 1.3e-21 | 86.21 | Ribosomal protein L33 family protein | [more] |
Match Name | E-value | Identity | Description | |
Q2W1A2 | 3.2e-12 | 67.92 | 50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70... | [more] |
B6IN38 | 5.4e-12 | 66.04 | 50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX... | [more] |
B3CRY6 | 6.0e-11 | 61.11 | 50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=... | [more] |
A8GY80 | 6.0e-11 | 62.96 | 50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) OX=391896 GN=... | [more] |
Q1RGQ4 | 6.0e-11 | 62.96 | 50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) OX=336407 GN=rp... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1KVU2 | 2.4e-23 | 100.00 | uncharacterized protein LOC111499157 OS=Cucurbita maxima OX=3661 GN=LOC111499157... | [more] |
A0A0A0LVW9 | 2.4e-23 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538800 PE=3 SV=1 | [more] |
A0A6J1CA39 | 2.4e-23 | 100.00 | uncharacterized protein LOC111009599 OS=Momordica charantia OX=3673 GN=LOC111009... | [more] |
A0A6J1H6A1 | 2.4e-23 | 100.00 | uncharacterized protein LOC111459991 OS=Cucurbita moschata OX=3662 GN=LOC1114599... | [more] |
A0A1S3BBV4 | 2.4e-23 | 100.00 | 50S ribosomal protein L33-like OS=Cucumis melo OX=3656 GN=LOC103488236 PE=3 SV=1 | [more] |