Bhi06G000654 (gene) Wax gourd (B227) v1

Overview
NameBhi06G000654
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionRRM domain-containing protein
Locationchr6: 17954380 .. 17957071 (-)
RNA-Seq ExpressionBhi06G000654
SyntenyBhi06G000654
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTATGGGCTATGACACTATTCTTCAATTGAGGTACAATTTGCCCCCAAAAAGTTGTTTTGCTCTACTGGTGAATGTGCAGAATCCCATTGTCGAAAGTGGGCCCAATGCTGTACAAGTAAATACGCCAAATTTCTTGCTTCATATTTGCCCCAATGCCTATCGTTGATTTCTTGCACTCTGTCAACAATGGTTTATAAAAGTTAGCCTATGCTAAAATTGAGGGTTCAATCATGGCCGGTTTAGATGTTGTAATGTCAAATCAGGTTTTCCTTATTCCAGCCAAATCGATTTATTTTGAATTGCGGTTCTACTTTACCTAGTTAAACAAGGAACCTTTATAGTTCTTTGAAATCTTGAGGTTGACCAATTCAAAACATAGCTTAGAAGGGTTTTCTTGCACCTCTTGCTAAAACATTGGGAAAAACCTCCCATACCGCAAGAATGTGCAGAAAAATAACAGAAAAATTAAAAGAAAACAATAAAACTGGAAACACAAGATTTAACGTGAAAAAACTCCAAACTGGAAAGAAACCAGGTACCAGAAAAATATCACTATGCGAAAAATTATTATAATCACATTGAAATCTCTCCCTAATTACAAAAGCATTCTCTCAAAATATTATATAACTCACACAGTTGAACTAGCCACACTGTTGTATGAAATCCACTCTAGACTTGTAAAAGGCTTAATGATTAATGAACTTTTGTCATTCTAATACTTCTACTTGTCTATTCTAATTTGATCTAACTTGAGTTTCGTGCATTTCTTCAGCTCCAGAGATTGTTAGTACTGGAGTTCGTGTACGCATTGTCAACCTTCCTAAAAAAAAAGAACATTCACAGAGACCTGATCGTGGCTTTTAAAGGCTTTCCTGGAATCATCAATATAACTCCTGCAGTCATTGGAAACAAAAAGACTAGGGAACCAATCTGCAAGGGTTTTGCATTTGTTGATTGCAATTCTGAAGGAGATGCCTTAAGGTATGTTTATGGATGAGAAGAAATTATAGAACCAATAGAAATTTAGTTCTAATCTTTTTCCTAAGCAGGTTAGCTTCGAAATACCAAACTTATTTAGTAAAAAAAGGTAGCACAGCAGCAATAAAATTGGTGAAGTACATTTTAATTACAAAACTCTTGAATGGTTTTTGTTTGATTCTTCGTTCACTGTCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATTAGAAACATTTCATTGATACTTAGAAAAACCCAACACCAAAATGTGATCACAGTAAAGTCTCCCATGGGAGATTAAATAAGATAAGCTGAAGTGAGGAAACGGGTGCTTAGTTTTGCATTAAAAAAAAAGAAAAGAAAAAAAACAGTAGAAACTAAAAAGAACAAATTCCGCAAAACGATCAAAAGAGGAAAAAGAGTCTTTGAAAAGGTGGCTATTATGCTCGCCCCAAAGATTCCAGAAGAAAGTTTGCAAAAGAGCCAATCAAATTGCCTTTAGTACCACCAAAAGGTTGAATGACCAGTAATGATGCAAGAATATCAAAAATATTGTTGGAGCATGGAAATGACCACCCGGCTTCAAAAATAATTTTCCAGAAAAGAGATGCAATGGAACAATGCATAAAAGGATGAGCTGGTGTCTCAGCATTTTGCTGATACATGGCACCAATAAGGATAAAGGTGCCTGAAAGGCATTCTTCTTTCACTTGGTTTTTATATTTTCATGGAGAAAAGTAGGGGAAAGACATTGAGTCATTCGATGTTTAGTAGATTTCCTTCATAAGACTAAAGTTTCAATCCAATGGTAACTAACTTATAAAGGCACCTTTAATAACCTATGGGAAGCCATCTCTCTTTGCCTTCCAGAGTTTTGTTCGGTCCTCACCTTTTATGTAAGAATGTCGGTAGAGTCTGGATTCTGGTAAGATCTTTTTGGCTTTGTTTTGGACCTGTCTCTTTACAGTTCTACTTCTTTGATCTCTGCCTGTATCTAAAATTTTTACAGCTCTTCTTGTCTCTTGTTCGTAAGTTGGAACAAACTCTTTTGGATTTCAGTTCCATAGGGCTCTCCTTGATTGAGAGATTAAGGAGTCGGTTTCTTGTGTCTTTACTTCAACCATCAGTTCTTTCACCTAGATATAATGACCTACATTGTGTGCCTCTCTACTTTGATCTTTTATCTTCTTCATGAACGTTAGTTTTCCATTAAAATAAAAATGTGTTAGCTATTTATATCTGTGCATTCTGAGATCATCAAGCGTTGGCCATATAAATTTGTACATTCTGAGACCATCACATCCTTACATGTCTTGGGATTGTCTTTATGAATGGTTTCTAGGTTTCATCTTAAACATGGCAACATTTCATGCATTCATAATCCTTGAAAAACTGGTAAAAAGAGTGACATTCATTTTCTTATTCAGTTTTCTACCAGCATTTTCTGGACGATATCTTACGTTTGGGAGGGTTCAGAAGCAAATAAAATGTGAAATAATGAATCGAAAAACTTCGAGTTCAACTTGCAAAAGTTCAGTGGATAGTATCTATCATTTTCAACTAAATATTCTTGAAGAGGAAGCAGAACAGTTTGCTGACATGGACGTGGATTTAGCGGTGAATTCATGAGAACAAGGATCGAGGATATTGAAGACAGTTTGGCAAATGTCAGTGAATTACATTCGGACGATGATGATAATGAT

mRNA sequence

ATGTTTATGGGCTATGACACTATTCTTCAATTGAGGTACAATTTGCCCCCAAAAAGTTGTTTTGCTCTACTGGTGAATGTGCAGAATCCCATTGTCGAAAGTGGGCCCAATGCTGTACAACTCCAGAGATTGTTAGTACTGGAGTTCGTGTACGCATTGTCAACCTTCCTAAAAAAAAAGAACATTCACAGAGACCTGATCGTGGCTTTTAAAGGCTTTCCTGGAATCATCAATATAACTCCTGCAGTCATTGGAAACAAAAAGACTAGGGAACCAATCTGCAAGGGTTTTGCATTTGTTGATTGCAATTCTGAAGGAGATGCCTTAAGTTTTCTACCAGCATTTTCTGGACGATATCTTACGTTTGGGAGGGTTCAGAAGCAAATAAAATGTGAAATAATGAATCGAAAAACTTCGAGTTCAACTTGCAAAAGTTCAGTGGATAGTATCTATCATTTTCAACTAAATATTCTTGAAGAGGAAGCAGAACAGTTTGCTGACATGGACGTGGATTTAGCGGATATTGAAGACAGTTTGGCAAATGTCAGTGAATTACATTCGGACGATGATGATAATGAT

Coding sequence (CDS)

ATGTTTATGGGCTATGACACTATTCTTCAATTGAGGTACAATTTGCCCCCAAAAAGTTGTTTTGCTCTACTGGTGAATGTGCAGAATCCCATTGTCGAAAGTGGGCCCAATGCTGTACAACTCCAGAGATTGTTAGTACTGGAGTTCGTGTACGCATTGTCAACCTTCCTAAAAAAAAAGAACATTCACAGAGACCTGATCGTGGCTTTTAAAGGCTTTCCTGGAATCATCAATATAACTCCTGCAGTCATTGGAAACAAAAAGACTAGGGAACCAATCTGCAAGGGTTTTGCATTTGTTGATTGCAATTCTGAAGGAGATGCCTTAAGTTTTCTACCAGCATTTTCTGGACGATATCTTACGTTTGGGAGGGTTCAGAAGCAAATAAAATGTGAAATAATGAATCGAAAAACTTCGAGTTCAACTTGCAAAAGTTCAGTGGATAGTATCTATCATTTTCAACTAAATATTCTTGAAGAGGAAGCAGAACAGTTTGCTGACATGGACGTGGATTTAGCGGATATTGAAGACAGTTTGGCAAATGTCAGTGAATTACATTCGGACGATGATGATAATGAT

Protein sequence

MFMGYDTILQLRYNLPPKSCFALLVNVQNPIVESGPNAVQLQRLLVLEFVYALSTFLKKKNIHRDLIVAFKGFPGIINITPAVIGNKKTREPICKGFAFVDCNSEGDALSFLPAFSGRYLTFGRVQKQIKCEIMNRKTSSSTCKSSVDSIYHFQLNILEEEAEQFADMDVDLADIEDSLANVSELHSDDDDND
Homology
[Close]
BLAST of Bhi06G000654 vs. TAIR 10
Match: AT1G70200.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-21
Identity = 62/144 (43.06%), Postives = 89/144 (61.81%), Query Frame = 0 

Query: 58  KKKNIHRDLIVAFKGFPGIINITPAVIGNKKTREPICKGFAFVDCNSEGDALSFLPAFSG 117
           KKKN+HRDL VAFK   G+++ITPAV GNKKT++P+CKGFA VD  +E DA  F+  F+G
Sbjct: 196 KKKNVHRDLKVAFKEVSGVLSITPAVSGNKKTKDPVCKGFAHVDFKTEIDANRFVKQFTG 255

Query: 118 RYLTFGRVQKQIKCEIMNRKTSSSTCKS-SVDSIYHFQ-LNILEEEAEQFADM---DVDL 177
           + L FG+V KQIKC+++   +  S  K   +D+ +  Q L     E +  AD+   +V L
Sbjct: 256 QSLAFGKVIKQIKCQVVEFTSDDSVSKEVYLDNGFKVQKLPYSGLEGDSSADVVEEEVLL 315

Query: 178 A---DIEDSLANVSELHSDDDDND 194
               + +DS   V E   +DD+ +
Sbjct: 316 GSGEESDDSEEEVDEREVEDDERN 339

[Close]
BLAST of Bhi06G000654 vs. ExPASy TrEMBL
Match: A0A0A0KQN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 7.1e-51
Identity = 108/145 (74.48%), Postives = 122/145 (84.14%), Query Frame = 0 

Query: 58  KKKNIHRDLIVAFKGFPGIINITPAVIGNKKTREPICKGFAFVDCNSEGDALSFLPAFSG 117
           +KKNIHRDL+VAFKGFPGIINITPAVIGNKKTR+P+CKGFAFVDC SEGDALSFL AF+G
Sbjct: 218 RKKNIHRDLVVAFKGFPGIINITPAVIGNKKTRDPVCKGFAFVDCKSEGDALSFLQAFAG 277

Query: 118 RYLTFGRVQKQIKCEIMNRKTSSSTCKSSVDSIYHFQLNILEEEAEQFADMDVDLA---- 177
           RYLTFGRVQKQIKCEIMNR+TSSS   SS+ S  H +L+ILEEEAEQF D+DVDLA    
Sbjct: 278 RYLTFGRVQKQIKCEIMNRQTSSSARNSSMSSTNHSRLSILEEEAEQFVDIDVDLASEAT 337

Query: 178 -----DIEDSLANVSELHSDDDDND 194
                DIED LA VSE HS ++D++
Sbjct: 338 RTKTEDIEDDLAYVSESHSHEEDDN 362

[Close]
BLAST of Bhi06G000654 vs. ExPASy TrEMBL
Match: A0A6J1KJD4 (uncharacterized protein LOC111493728 OS=Cucurbita maxima OX=3661 GN=LOC111493728 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 4.6e-50
Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = 0 

Query: 58  KKKNIHRDLIVAFKGFPGIINITPAVIGNKKTREPICKGFAFVDCNSEGDALSFLPAFSG 117
           KK+NIHRDL++AFKGFPGI+NITPAVIGNKKTR+PICKGFAFVDC SEGDA+SFL +FSG
Sbjct: 208 KKRNIHRDLMLAFKGFPGIVNITPAVIGNKKTRDPICKGFAFVDCKSEGDAISFLQSFSG 267

Query: 118 RYLTFGRVQKQIKCEIMNRKTSSSTCKSSVDSIYHFQLNILEEEAEQFADMDVDLA---- 177
           +YLTFGRVQKQIKCEIMN++TS+   + SV S  H +L+ILEE+AEQ ADMD+DLA    
Sbjct: 268 QYLTFGRVQKQIKCEIMNQQTSNLAREISVVSTNHSRLSILEEKAEQVADMDMDLAGEVE 327

Query: 178 -----DIEDSLANVSELHSDDDDN 193
                DIED+LA VSELHSDDDDN
Sbjct: 328 RTRVEDIEDNLAYVSELHSDDDDN 351

[Close]
BLAST of Bhi06G000654 vs. ExPASy TrEMBL
Match: A0A1S3CPG6 (uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.8e-49
Identity = 111/145 (76.55%), Postives = 122/145 (84.14%), Query Frame = 0 

Query: 58  KKKNIHRDLIVAFKGFPGIINITPAVIGNKKTREPICKGFAFVDCNSEGDALSFLPAFSG 117
           KKKNI+RDL+VAFKGFPGIINITPAVIGNKKTR+PICKGFAFVDC SEGDALSFL AFSG
Sbjct: 186 KKKNINRDLVVAFKGFPGIINITPAVIGNKKTRDPICKGFAFVDCKSEGDALSFLQAFSG 245

Query: 118 RYLTFGRVQKQIKCEIMNRKTSSSTCKSSVDSIYHFQLNILEEEAEQFADMDVDLA---- 177
           RYL+FGRVQKQIKCEIMNR+TSSS  KSSV S  + +L+ILEEEAEQFAD+DVDLA    
Sbjct: 246 RYLSFGRVQKQIKCEIMNRQTSSSARKSSVGSTNNSRLSILEEEAEQFADIDVDLASEAA 305

Query: 178 -----DIEDSLANVSELHSDD-DDN 193
                + ED LA V+E HS D DDN
Sbjct: 306 RTKIEENEDDLAYVNESHSHDVDDN 330

[Close]
BLAST of Bhi06G000654 vs. ExPASy TrEMBL
Match: A0A6J1G3T4 (uncharacterized protein LOC111450524 OS=Cucurbita moschata OX=3662 GN=LOC111450524 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 4.8e-47
Identity = 101/145 (69.66%), Postives = 123/145 (84.83%), Query Frame = 0 

Query: 58  KKKNIHRDLIVAFKGFPGIINITPAVIGNKKTREPICKGFAFVDCNSEGDALSFLPAFSG 117
           KK+NIHRDL++AF+GFPGI+NITPAVIGNKKTR+PICKGFAFVDC SEGDA+SFL +FSG
Sbjct: 189 KKRNIHRDLMLAFEGFPGIVNITPAVIGNKKTRDPICKGFAFVDCKSEGDAISFLQSFSG 248

Query: 118 RYLTFGRVQKQIKCEIMNRKTSSSTCKSSVDSIYHFQLNILEEEAEQFADMDVDLA---- 177
           +YLTFGRVQKQIKCEIMN++TS+S  + SV S    +L+ILEEEAEQ AD+D+DLA    
Sbjct: 249 QYLTFGRVQKQIKCEIMNQQTSNSAREISVVSTNRSRLSILEEEAEQVADIDMDLAGEVE 308

Query: 178 -----DIEDSLANVSELHSDDDDND 194
                D+ED+LA VSEL SDD+D++
Sbjct: 309 RTRVEDVEDNLAYVSELDSDDEDDN 333

[Close]
BLAST of Bhi06G000654 vs. ExPASy TrEMBL
Match: A0A6J1DEC7 (uncharacterized protein LOC111019305 OS=Momordica charantia OX=3673 GN=LOC111019305 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 4.1e-46
Identity = 99/145 (68.28%), Postives = 117/145 (80.69%), Query Frame = 0 

Query: 58  KKKNIHRDLIVAFKGFPGIINITPAVIGNKKTREPICKGFAFVDCNSEGDALSFLPAFSG 117
           KKKNIHRDL+VAFK FPGIINI PAV+GNKKTR+PICKGFAFVDC SEGDA+ FL  FSG
Sbjct: 182 KKKNIHRDLVVAFKEFPGIINIVPAVVGNKKTRDPICKGFAFVDCKSEGDAIRFLQTFSG 241

Query: 118 RYLTFGRVQKQIKCEIMNRKTSSSTCKSSVDSIYHFQLNILEEEAEQFADMDVDLA---- 177
           +YLTFGRVQKQIKCE++NR+TS+S C+SSV S  H    I E EAEQ AD+D DL+    
Sbjct: 242 QYLTFGRVQKQIKCEMINRRTSTSACESSVGSTKHALPIIPEYEAEQDADLDKDLSDEVI 301

Query: 178 -----DIEDSLANVSELHSDDDDND 194
                D+E++L +VSELHSDD+DN+
Sbjct: 302 RTRVEDMEENLVSVSELHSDDEDNE 326

The following BLAST results are available for this feature:
BLAST of Bhi06G000654 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70200.13.4e-2143.06RNA-binding (RRM/RBD/RNP motifs) family protein [more]
BLAST of Bhi06G000654 vs. TAIR 10
Match NameE-valueIdentityDescription
BLAST of Bhi06G000654 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQN37.1e-5174.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G488800 PE=4 SV=1[more]
A0A6J1KJD44.6e-5073.61uncharacterized protein LOC111493728 OS=Cucurbita maxima OX=3661 GN=LOC111493728... [more]
A0A1S3CPG61.8e-4976.55uncharacterized protein LOC103503317 OS=Cucumis melo OX=3656 GN=LOC103503317 PE=... [more]
A0A6J1G3T44.8e-4769.66uncharacterized protein LOC111450524 OS=Cucurbita moschata OX=3662 GN=LOC1114505... [more]
A0A6J1DEC74.1e-4668.28uncharacterized protein LOC111019305 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37200RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 58..189

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M000654Bhi06M000654mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding