Bhi06G000195 (gene) Wax gourd (B227) v1

Overview


Name	Bhi06G000195
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	succinate dehydrogenase assembly factor 1, mitochondrial-like
Location	chr6: 5024679 .. 5025189 (-)
RNA-Seq Expression	Bhi06G000195
Synteny	Bhi06G000195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCGCTGAAGATCGACGGCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCGTAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAAGTCCTGGCACTGTTCGATTTTCGACTATCAATCCCCATTCTGAGCCTTGAAATTGTATGTACATTTCTTCGATTCTTCGCTATGGCTGTTCTCGGTTCTGATAGGATCGATTTTGAACCCTAGAAAATAAACTGCGATCGATTTGCTTTTTTACCTCCTGAATTTCAGATTCGCAATTTTGCTGGTGGATCCTCATCTGATAATGAAATTTTTTATTCATGATCTTGCTTTTCAGTGACGATCAATTTCGCAGCATGCTTCAAATGTTTGAAAATGGAGACAATGGGATTTTCTTAG

mRNA sequence

ATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCGCTGAAGATCGACGGCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCTGACGATCAATTTCGCAGCATGCTTCAAATGTTTGAAAATGGAGACAATGGGATTTTCTTAG

Coding sequence (CDS)

ATGGCGAAGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTCTACAGAGCATTTCTCCGAGCAGCTCGTTCCAAATCCGCTGAAGATCGACGGCAAATCGAATCGATTGTCGCCGCCGAGTTCCGCCGAAACGCCAAGCAAATCGATCTGACGATCAATTTCGCAGCATGCTTCAAATGTTTGAAAATGGAGACAATGGGATTTTCTTAG

Protein sequence

MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQIDLTINFAACFKCLKMETMGFS

Homology

[Close]

BLAST of Bhi06G000195 vs. TAIR 10
Match: AT2G39725.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 67.4 bits (163), Expect = 5.1e-12
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 2  AKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++D
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVD 51

[Close]

BLAST of Bhi06G000195 vs. TAIR 10
Match: AT2G39725.2 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 67.4 bits (163), Expect = 5.1e-12
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 2  AKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          +KLSG+QKQVLSLYR FLRAARS+  EDR++IE IV+ EFR N+K++D
Sbjct: 4  SKLSGMQKQVLSLYRGFLRAARSRPIEDRKRIEMIVSTEFRHNSKEVD 51

[Close]

BLAST of Bhi06G000195 vs. ExPASy TrEMBL
Match: A0A6J1IEP3 (succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111472023 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-17
Identity = 61/87 (70.11%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 3  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID------------- 62
          KLSGLQKQVLSLYRAFLRAARSKSAEDRRQ+ESIVAAEFRRNAKQID             
Sbjct: 8  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQMESIVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 63 LTINFAACF-------KCLKMETMGFS 70
           TINFA  F       KCLKM TM FS
Sbjct: 68 ATINFAEQFKSVVESLKCLKMRTMDFS 94

[Close]

BLAST of Bhi06G000195 vs. ExPASy TrEMBL
Match: A0A6J1EHV2 (succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111432701 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 57/87 (65.52%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 3  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID------------- 62
          KLSGLQKQVLSLYR+FLRAARSKSAEDRRQ+ES+VAAEFRRNAKQID             
Sbjct: 8  KLSGLQKQVLSLYRSFLRAARSKSAEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR 67

Query: 63 LTINF-------AACFKCLKMETMGFS 70
          +TINF           KCLKM TM FS
Sbjct: 68 VTINFGKQSKSVVESLKCLKMWTMDFS 94

[Close]

BLAST of Bhi06G000195 vs. ExPASy TrEMBL
Match: A0A1S3CAJ2 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103498675 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.1e-13
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 1  MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVAAEFRRNAKQID
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVAAEFRRNAKQID 49

[Close]

BLAST of Bhi06G000195 vs. ExPASy TrEMBL
Match: A0A0A0KST3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.2e-13
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MAKLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          MAKLSGLQKQVLSLYRAFLRAAR+KS EDR+Q+ESIVA EFRRNAKQID
Sbjct: 1  MAKLSGLQKQVLSLYRAFLRAARTKSVEDRQQMESIVATEFRRNAKQID 49

[Close]

BLAST of Bhi06G000195 vs. ExPASy TrEMBL
Match: A0A6J1CJC1 (succinate dehydrogenase assembly factor 1, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012137 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 0


Query: 3  KLSGLQKQVLSLYRAFLRAARSKSAEDRRQIESIVAAEFRRNAKQID 50
          KLSGLQKQVLSLYR FLRAARSKSAEDRRQ+ES+VAAEFRRNA QID
Sbjct: 6  KLSGLQKQVLSLYRGFLRAARSKSAEDRRQMESLVAAEFRRNADQID 52

The following BLAST results are available for this feature:

BLAST of Bhi06G000195 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39725.1	5.1e-12	68.75	LYR family of Fe/S cluster biogenesis protein	[more]
AT2G39725.2	5.1e-12	68.75	LYR family of Fe/S cluster biogenesis protein	[more]

BLAST of Bhi06G000195 vs. TAIR 10


Match Name	E-value	Identity	Description

BLAST of Bhi06G000195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEP3	3.2e-17	70.11	succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita maxim...	[more]
A0A6J1EHV2	1.0e-15	65.52	succinate dehydrogenase assembly factor 1, mitochondrial-like OS=Cucurbita mosch...	[more]
A0A1S3CAJ2	2.1e-13	91.84	succinate dehydrogenase assembly factor 1, mitochondrial OS=Cucumis melo OX=3656...	[more]
A0A0A0KST3	6.2e-13	89.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G649345 PE=4 SV=1	[more]
A0A6J1CJC1	2.3e-12	91.49	succinate dehydrogenase assembly factor 1, mitochondrial OS=Momordica charantia ...	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 9..49 e-value: 5.0E-11 score: 42.5
None	No IPR available	PANTHER	PTHR13675:SF1	SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 1, MITOCHONDRIAL	coord: 3..49
None	No IPR available	PANTHER	PTHR13675	LYR MOTIF-CONTAINING PROTEIN 2	coord: 3..49
None	No IPR available	CDD	cd20268	Complex1_LYR_SDHAF1_LYRM8	coord: 5..46 e-value: 1.63692E-15 score: 61.8434

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi06M000195	Bhi06M000195	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034553	mitochondrial respiratory chain complex II assembly
cellular_component	GO:0005739	mitochondrion