Bhi05G001830 (gene) Wax gourd (B227) v1

Overview


Name	Bhi05G001830
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Unknown protein
Location	chr5: 64695209 .. 64695475 (-)
RNA-Seq Expression	Bhi05G001830
Synteny	Bhi05G001830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTCAACACAAAACTCGCTTCATTAATGGCTGTTCTTTTCATGGTGATGATTGTCACCGCGGCGGCCGGCCGCCATGCAACGCCGCCGTTGACGGTGGACGAGGAGGCTGAAAGCAGGAGCAGCATTATGATAATGCGTAAGTTTGGTTATAGTAAAAGGCAAATGGAACATTTAAGAAGACTTTCTTCTTCAAGTACTGCAAGATATATTCCTGGGGGGCCTGATTCTCAACATCATTCTCAACCACCTCGTTTGCCTTAG

mRNA sequence

ATGGCACTCAACACAAAACTCGCTTCATTAATGGCTGTTCTTTTCATGGTGATGATTGTCACCGCGGCGGCCGGCCGCCATGCAACGCCGCCGTTGACGGTGGACGAGGAGGCTGAAAGCAGGAGCAGCATTATGATAATGCGTAAGTTTGGTTATAGTAAAAGGCAAATGGAACATTTAAGAAGACTTTCTTCTTCAAGTACTGCAAGATATATTCCTGGGGGGCCTGATTCTCAACATCATTCTCAACCACCTCGTTTGCCTTAG

Coding sequence (CDS)

ATGGCACTCAACACAAAACTCGCTTCATTAATGGCTGTTCTTTTCATGGTGATGATTGTCACCGCGGCGGCCGGCCGCCATGCAACGCCGCCGTTGACGGTGGACGAGGAGGCTGAAAGCAGGAGCAGCATTATGATAATGCGTAAGTTTGGTTATAGTAAAAGGCAAATGGAACATTTAAGAAGACTTTCTTCTTCAAGTACTGCAAGATATATTCCTGGGGGGCCTGATTCTCAACATCATTCTCAACCACCTCGTTTGCCTTAG

Protein sequence

MALNTKLASLMAVLFMVMIVTAAAGRHATPPLTVDEEAESRSSIMIMRKFGYSKRQMEHLRRLSSSSTARYIPGGPDSQHHSQPPRLP

Homology

[Close]

BLAST of Bhi05G001830 vs. ExPASy TrEMBL
Match: A0A5D3C664 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00250 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.2e-26
Identity = 72/88 (81.82%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 4  NTKLASLMAVLFMVMIVTAAAGRHATP-PLTVDEEAE--SRSSIMIMRKFGYSKRQMEHL 63
          N  LA LMAVLFMVM+VTAAA RHAT  P TV+E  E  S S  MIMRKFGYSKRQMEHL
Sbjct: 6  NRILAPLMAVLFMVMLVTAAADRHATALPWTVEEATERISSSRNMIMRKFGYSKRQMEHL 65

Query: 64 RRLSSSSTARYIPGGPDSQHHSQPPRLP 89
          RRLSSSSTARYIPGGPDSQHHSQPPRLP
Sbjct: 66 RRLSSSSTARYIPGGPDSQHHSQPPRLP 93

[Close]

BLAST of Bhi05G001830 vs. ExPASy TrEMBL
Match: A0A0A0KGI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419510 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 64/82 (78.05%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 10 LMAVLFMVMIVTAAAGRHATPPLTVDEEAESR---SSIMIMRKFGYSKRQMEHLRRLSSS 69
          LMAVLFM M+VTAA   HAT  L   EEA  R   SS M+MRKFGYSKRQMEHLRRLSSS
Sbjct: 13 LMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQMEHLRRLSSS 72

Query: 70 STARYIPGGPDSQHHSQPPRLP 89
          ST RYIPGGPDSQHHSQPPRLP
Sbjct: 73 STERYIPGGPDSQHHSQPPRLP 94

The following BLAST results are available for this feature:

BLAST of Bhi05G001830 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G001830 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi05G001830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C664	6.2e-26	81.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGI4	1.1e-22	78.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419510 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..88
None	No IPR available	PANTHER	PTHR36016:SF9	SUBFAMILY NOT NAMED	coord: 1..88
IPR039617	CLAVATA3/ESR (CLE)-related protein	PANTHER	PTHR36016	CLAVATA3/ESR (CLE)-RELATED PROTEIN 7	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi05M001830	Bhi05M001830	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0005615	extracellular space