Bhi04G001879 (gene) Wax gourd (B227) v1

Overview
NameBhi04G001879
Typegene
OrganismBenincasa hispida (Wax gourd (B227) v1)
DescriptionAP2/ERF transcription factor
Locationchr4: 63001544 .. 63001769 (+)
RNA-Seq ExpressionBhi04G001879
SyntenyBhi04G001879
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAAAGGCGGCCCCGACAACAACAAATTCCGTTACCGCGGCGTCCGTCAACGCAGCTGGGGCAAATAAGGGTCGCCGAGATTCGCGAGCCTCGTAAACGCACCCGCAAGTGGTCGGTACTTTCTCCACCTGAAGACGCCGCTCGTGCTTACGACCGAGCCGCCATCATCCTTTACGGCTCCCGCGCCAACTCAACCTTCAATCCACTTCCCCAACTCTTCCTCTAA

mRNA sequence

GCAAAGGCGGCCCCGACAACAACAAATTCCGTTACCGCGGCGTCCGTCAACGCAGCTGGGGCAAATAAGGGTCGCCGAGATTCGCGAGCCTCGTAAACGCACCCGCAAGTGGTCGGTACTTTCTCCACCTGAAGACGCCGCTCGTGCTTACGACCGAGCCGCCATCATCCTTTACGGCTCCCGCGCCAACTCAACCTTCAATCCACTTCCCCAACTCTTCCTCTAA

Coding sequence (CDS)

GCAAAGGCGGCCCCGACAACAACAAATTCCGTTACCGCGGCGTCCGTCAACGCAGCTGGGGCAAATAAGGGTCGCCGAGATTCGCGAGCCTCGTAAACGCACCCGCAAGTGGTCGGTACTTTCTCCACCTGAAGACGCCGCTCGTGCTTACGACCGAGCCGCCATCATCCTTTACGGCTCCCGCGCCAACTCAACCTTCAATCCACTTCCCCAACTCTTCCTCTAA

Protein sequence

QRRPRQQQIPLPRRPSTQLGQIRVAEIREPRKRTRKWSVLSPPEDAARAYDRAAIILYGSRANSTFNPLPQLFL
Homology
[Close]
BLAST of Bhi04G001879 vs. TAIR 10
Match: AT2G40220.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-10
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 24  VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNP 69
           VAEIREPRKRTRKW    +  EDAARAYDRAA+ LYGSRA     P
Sbjct: 67  VAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTP 112

[Close]
BLAST of Bhi04G001879 vs. TAIR 10
Match: AT4G34410.1 (redox responsive transcription factor 1 )

HSP 1 Score: 44.3 bits (103), Expect = 5.0e-05
Identity = 24/43 (55.81%), Postives = 27/43 (62.79%), Query Frame = 0 

Query: 25  AEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTF 67
           AEIR+P++ TR W       EDAARAYDRAAI   G RA   F
Sbjct: 149 AEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNF 191

[Close]
BLAST of Bhi04G001879 vs. TAIR 10
Match: AT4G16750.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 6.5e-05
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 24 VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNPL 70
          V+EIREPRK++R W    S PE AARA+D AA+ + G  A+  F  L
Sbjct: 52 VSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPEL 98

[Close]
BLAST of Bhi04G001879 vs. TAIR 10
Match: AT1G77200.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 8.5e-05
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 24  VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNPL 70
           V+EIREPRK++R W    S PE AARA+D AA+ + G+ A   F  L
Sbjct: 55  VSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPEL 101

[Close]
BLAST of Bhi04G001879 vs. TAIR 10
Match: AT5G44210.1 (erf domain protein 9 )

HSP 1 Score: 43.5 bits (101), Expect = 8.5e-05
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 25 AEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNPLP 71
          AEIR+P K+TR W       E+AARAYD AA    GS+A + F PLP
Sbjct: 46 AEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF-PLP 91

[Close]
BLAST of Bhi04G001879 vs. ExPASy Swiss-Prot
Match: A0MES8 (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana OX=3702 GN=ABI4 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-09
Identity = 32/46 (69.57%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 24  VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNP 69
           VAEIREPRKRTRKW    +  EDAARAYDRAA+ LYGSRA     P
Sbjct: 67  VAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTP 112

[Close]
BLAST of Bhi04G001879 vs. ExPASy Swiss-Prot
Match: C7J2Z1 (Ethylene-responsive transcription factor ABI4 OS=Oryza sativa subsp. japonica OX=39947 GN=ABI4 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-09
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 24  VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNPLPQL 73
           VAEIREPRKR+RKW    +  EDAARAYDRAA++LYG RA+      P L
Sbjct: 62  VAEIREPRKRSRKWLGTFATAEDAARAYDRAALLLYGPRAHLNLTAPPPL 111

[Close]
BLAST of Bhi04G001879 vs. ExPASy Swiss-Prot
Match: Q9SXS8 (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.1e-04
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 25 AEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNPLP 71
          AEIR+P K+TR W       EDAARAYD AA  L G +A + F PLP
Sbjct: 41 AEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNF-PLP 86

[Close]
BLAST of Bhi04G001879 vs. ExPASy Swiss-Prot
Match: Q9SZ06 (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana OX=3702 GN=ERF109 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 7.0e-04
Identity = 24/43 (55.81%), Postives = 27/43 (62.79%), Query Frame = 0 

Query: 25  AEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTF 67
           AEIR+P++ TR W       EDAARAYDRAAI   G RA   F
Sbjct: 149 AEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNF 191

[Close]
BLAST of Bhi04G001879 vs. ExPASy Swiss-Prot
Match: Q9SUK8 (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana OX=3702 GN=ERF039 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.2e-04
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 24 VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNPL 70
          V+EIREPRK++R W    S PE AARA+D AA+ + G  A+  F  L
Sbjct: 52 VSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPEL 98

[Close]
BLAST of Bhi04G001879 vs. ExPASy TrEMBL
Match: A0A067L8M8 (AP2/ERF domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_01232 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-08
Identity = 35/47 (74.47%), Postives = 36/47 (76.60%), Query Frame = 0 

Query: 24  VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNPL 70
           VAEIREPRKRTRKW    +  EDAARAYDRAAIILYGSRA     PL
Sbjct: 74  VAEIREPRKRTRKWLGTFASAEDAARAYDRAAIILYGSRAQLNLQPL 120

[Close]
BLAST of Bhi04G001879 vs. ExPASy TrEMBL
Match: A0A6A5LV09 (Putative transcription factor AP2-EREBP family OS=Lupinus albus OX=3870 GN=Lal_00021922 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-08
Identity = 35/46 (76.09%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 24  VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNP 69
           VAEIREPRKRTRKW    S  EDAARAYDRAAIILYGSRA     P
Sbjct: 64  VAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQP 109

[Close]
BLAST of Bhi04G001879 vs. ExPASy TrEMBL
Match: A0A498JM37 (AP2/ERF domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024356 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-08
Identity = 35/46 (76.09%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 24  VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNP 69
           VAEIREPRKRTRKW    S  EDAARAYDRAAIILYGSRA     P
Sbjct: 75  VAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQP 120

[Close]
BLAST of Bhi04G001879 vs. ExPASy TrEMBL
Match: A0A2C9V286 (AP2/ERF domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_10G010300 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-08
Identity = 35/46 (76.09%), Postives = 35/46 (76.09%), Query Frame = 0 

Query: 24  VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNP 69
           VAEIREPRKRTRKW    S  EDAARAYDRAAIILYGSRA     P
Sbjct: 72  VAEIREPRKRTRKWLGTFSTAEDAARAYDRAAIILYGSRAQLNLQP 117

[Close]
BLAST of Bhi04G001879 vs. ExPASy TrEMBL
Match: A0A1U8AFY6 (ethylene-responsive transcription factor ABI4 OS=Nelumbo nucifera OX=4432 GN=LOC104599845 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 6.4e-08
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 24  VAEIREPRKRTRKW-SVLSPPEDAARAYDRAAIILYGSRANSTFNPLP 71
           VAEIREPRKRTRKW    +  EDAARAYDRAA++LYGSRA     P P
Sbjct: 72  VAEIREPRKRTRKWLGTFATAEDAARAYDRAALVLYGSRAQLNLQPSP 119

The following BLAST results are available for this feature:
BLAST of Bhi04G001879 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G40220.11.0e-1069.57Integrase-type DNA-binding superfamily protein [more]
AT4G34410.15.0e-0555.81redox responsive transcription factor 1 [more]
AT4G16750.16.5e-0551.06Integrase-type DNA-binding superfamily protein [more]
AT1G77200.18.5e-0551.06Integrase-type DNA-binding superfamily protein [more]
AT5G44210.18.5e-0553.19erf domain protein 9 [more]
BLAST of Bhi04G001879 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0MES81.5e-0969.57Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana OX=3702 GN... [more]
C7J2Z17.3e-0962.00Ethylene-responsive transcription factor ABI4 OS=Oryza sativa subsp. japonica OX... [more]
Q9SXS84.1e-0455.32Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 ... [more]
Q9SZ067.0e-0455.81Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9SUK89.2e-0451.06Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Bhi04G001879 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A067L8M83.7e-0874.47AP2/ERF domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_01232 PE=... [more]
A0A6A5LV094.9e-0876.09Putative transcription factor AP2-EREBP family OS=Lupinus albus OX=3870 GN=Lal_0... [more]
A0A498JM374.9e-0876.09AP2/ERF domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_024356 PE=... [more]
A0A2C9V2864.9e-0876.09AP2/ERF domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_10G01030... [more]
A0A1U8AFY66.4e-0868.75ethylene-responsive transcription factor ABI4 OS=Nelumbo nucifera OX=4432 GN=LOC... [more]
InterPro
Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 13..73
e-value: 6.7E-4
score: 19.6
IPR036955AP2/ERF domain superfamilyGENE3D3.30.730.10AP2/ERF domaincoord: 21..68
e-value: 1.9E-6
score: 29.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR31241DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2Ccoord: 24..63
NoneNo IPR availablePANTHERPTHR31241:SF24ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4coord: 24..63
IPR016177DNA-binding domain superfamilySUPERFAMILY54171DNA-binding domaincoord: 24..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi04M001879Bhi04M001879mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0000976 transcription cis-regulatory region binding
molecular_function GO:0003677 DNA binding