Bhi04G000519 (gene) Wax gourd (B227) v1

Overview


Name	Bhi04G000519
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	Photosystem II protein D1
Location	chr4: 14532144 .. 14532634 (-)
RNA-Seq Expression	Bhi04G000519
Synteny	Bhi04G000519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCAGTCAAGAGGAAGAAACTTATAATACCGTAGCTGCTCATGGTTATTTTGGCAGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCATTCTTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTG

mRNA sequence

TGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCAGTCAAGAGGAAGAAACTTATAATACCGTAGCTGCTCATGGTTATTTTGGCAGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCATTCTTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTG

Coding sequence (CDS)

ATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAAGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAAATTCAGTCAAGAGGAAGAAACTTATAATACCGTAGCTGCTCATGGTTATTTTGGCAGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCATTCTTTACATTTCTTCCTAGTTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTG

Protein sequence

MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENESANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL

Homology

[Close]

BLAST of Bhi04G000519 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 301.2 bits (770), Expect = 4.8e-82
Identity = 149/155 (96.13%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 172 MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 231

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGY+F QEEETYN VAAHGYFGRLIFQYASFNNS SLHFFL AWPVVGIWFTALGIS
Sbjct: 232 SANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGIS 291

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 292 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 326

[Close]

BLAST of Bhi04G000519 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-19
Identity = 48/128 (37.50%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 4   GISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENESAN 63
           G++  F F++ FQ  HN  ++PFHM+GVAGV G +L  A+HG+ V ++L  E  +  +  
Sbjct: 175 GVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTF 234

Query: 64  EGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGISTMA 123
             +  +Q EETY+ V A+ ++ ++     +F+N   LHFF++  PV G+W +ALG+  +A
Sbjct: 235 RAFNPTQAEETYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLA 294

Query: 124 FNLNGFNF 132
            NL  ++F
Sbjct: 295 LNLRAYDF 299

[Close]

BLAST of Bhi04G000519 vs. ExPASy Swiss-Prot
Match: A1E9Y8 (Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.0e-81
Identity = 150/155 (96.77%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 172 MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 231

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGYKF QEEETYN VAAHGYFGRLIFQYASFNNS SLHFFL AWPVVGIWFTALGIS
Sbjct: 232 SANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGIS 291

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 292 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 326

[Close]

BLAST of Bhi04G000519 vs. ExPASy Swiss-Prot
Match: P56318 (Photosystem II protein D1 OS=Chlorella vulgaris OX=3077 GN=psbA PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.0e-81
Identity = 150/155 (96.77%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 172 MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 231

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGYKF QEEETYN VAAHGYFGRLIFQYASFNNS SLHFFL AWPVVGIWFTALGIS
Sbjct: 232 SANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGIS 291

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 292 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 326

[Close]

BLAST of Bhi04G000519 vs. ExPASy Swiss-Prot
Match: P05337 (Photosystem II protein D1 OS=Hordeum vulgare OX=4513 GN=psbA PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.0e-81
Identity = 150/155 (96.77%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 172 MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 231

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGYKF QEEETYN VAAHGYFGRLIFQYASFNNS SLHFFL AWPVVGIWFTALGIS
Sbjct: 232 SANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGIS 291

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 292 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 326

[Close]

BLAST of Bhi04G000519 vs. ExPASy Swiss-Prot
Match: A8Y9F0 (Photosystem II protein D1 OS=Lolium perenne OX=4522 GN=psbA PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.0e-81
Identity = 150/155 (96.77%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 172 MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 231

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGYKF QEEETYN VAAHGYFGRLIFQYASFNNS SLHFFL AWPVVGIWFTALGIS
Sbjct: 232 SANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGIS 291

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 292 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 326

[Close]

BLAST of Bhi04G000519 vs. ExPASy Swiss-Prot
Match: P48183 (Photosystem II protein D1 OS=Zea mays OX=4577 GN=psbA PE=1 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.0e-81
Identity = 150/155 (96.77%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 172 MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 231

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGYKF QEEETYN VAAHGYFGRLIFQYASFNNS SLHFFL AWPVVGIWFTALGIS
Sbjct: 232 SANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGIS 291

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 292 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 326

[Close]

BLAST of Bhi04G000519 vs. NCBI nr
Match: XP_038885063.1 (photosystem II protein D1-like [Benincasa hispida])

HSP 1 Score: 312.0 bits (798), Expect = 2.9e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE
Sbjct: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS
Sbjct: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 155

[Close]

BLAST of Bhi04G000519 vs. NCBI nr
Match: KAD5802925.1 (hypothetical protein E3N88_14285 [Mikania micrantha])

HSP 1 Score: 302.8 bits (774), Expect = 1.8e-78
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQA+HNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 447 MPLGISGTFNFMIVFQAKHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 506

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGY+F QEEETYN VAAHGYFGRLIFQYASFNNSHSLHFFL AWPVVGIWFTALGIS
Sbjct: 507 SANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSHSLHFFLAAWPVVGIWFTALGIS 566

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 567 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 601

[Close]

BLAST of Bhi04G000519 vs. NCBI nr
Match: ()

[Close]

BLAST of Bhi04G000519 vs. ExPASy TrEMBL
Match: A0A5N6P436 (Photosystem II protein D1 OS=Mikania micrantha OX=192012 GN=E3N88_14285 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.5e-79
Identity = 149/155 (96.13%), Postives = 152/155 (98.06%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQA+HNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 447 MPLGISGTFNFMIVFQAKHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 506

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGY+F QEEETYN VAAHGYFGRLIFQYASFNNSHSLHFFL AWPVVGIWFTALGIS
Sbjct: 507 SANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSHSLHFFLAAWPVVGIWFTALGIS 566

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 567 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 601

[Close]

BLAST of Bhi04G000519 vs. ExPASy TrEMBL
Match: E9L6P8 (PsbA (Fragment) OS=freshwater phytoplankton environmental sample OX=940671 GN=psbA PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 150/155 (96.77%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 35  MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 94

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGYKF QEEETYN VAAHGYFGRLIFQYASFNNS SLHFFL AWPVVGIWFTALGIS
Sbjct: 95  SANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGIS 154

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 155 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 189

[Close]

BLAST of Bhi04G000519 vs. ExPASy TrEMBL
Match: E9L6Q6 (PsbA (Fragment) OS=freshwater phytoplankton environmental sample OX=940671 GN=psbA PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 150/155 (96.77%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 35  MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 94

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGYKF QEEETYN VAAHGYFGRLIFQYASFNNS SLHFFL AWPVVGIWFTALGIS
Sbjct: 95  SANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGIS 154

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 155 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 189

[Close]

BLAST of Bhi04G000519 vs. ExPASy TrEMBL
Match: A0A1Y0ACL0 (Photosystem II protein D1 OS=Andropogon fastigiatus OX=330559 GN=psbA PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 150/155 (96.77%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 172 MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 231

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGYKF QEEETYN VAAHGYFGRLIFQYASFNNS SLHFFL AWPVVGIWFTALGIS
Sbjct: 232 SANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGIS 291

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 292 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 326

[Close]

BLAST of Bhi04G000519 vs. ExPASy TrEMBL
Match: W8SIR2 (Photosystem II protein D1 OS=Chlorella sorokiniana OX=3076 GN=psbA1 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.1e-78
Identity = 150/155 (96.77%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIKETTENE 60
           MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLI+ETTENE
Sbjct: 172 MPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENE 231

Query: 61  SANEGYKFSQEEETYNTVAAHGYFGRLIFQYASFNNSHSLHFFLVAWPVVGIWFTALGIS 120
           SANEGYKF QEEETYN VAAHGYFGRLIFQYASFNNS SLHFFL AWPVVGIWFTALGIS
Sbjct: 232 SANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGIS 291

Query: 121 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 156
           TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL
Sbjct: 292 TMAFNLNGFNFNQSVVDSQGRVINTWADIINRANL 326

The following BLAST results are available for this feature:

BLAST of Bhi04G000519 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	4.8e-82	96.13	photosystem II reaction center protein A	[more]
ATCG00270.1	1.2e-19	37.50	photosystem II reaction center protein D	[more]

BLAST of Bhi04G000519 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1E9Y8	3.0e-81	96.77	Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1	[more]
P56318	3.0e-81	96.77	Photosystem II protein D1 OS=Chlorella vulgaris OX=3077 GN=psbA PE=3 SV=1	[more]
P05337	3.0e-81	96.77	Photosystem II protein D1 OS=Hordeum vulgare OX=4513 GN=psbA PE=3 SV=1	[more]
A8Y9F0	3.0e-81	96.77	Photosystem II protein D1 OS=Lolium perenne OX=4522 GN=psbA PE=3 SV=1	[more]
P48183	3.0e-81	96.77	Photosystem II protein D1 OS=Zea mays OX=4577 GN=psbA PE=1 SV=1	[more]

BLAST of Bhi04G000519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885063.1	2.9e-81	100.00	photosystem II protein D1-like [Benincasa hispida]	[more]
KAD5802925.1	1.8e-78	96.13	hypothetical protein E3N88_14285 [Mikania micrantha]	[more]
	0			[more]

BLAST of Bhi04G000519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6P436	8.5e-79	96.13	Photosystem II protein D1 OS=Mikania micrantha OX=192012 GN=E3N88_14285 PE=3 SV=...	[more]
E9L6P8	1.1e-78	96.77	PsbA (Fragment) OS=freshwater phytoplankton environmental sample OX=940671 GN=ps...	[more]
E9L6Q6	1.1e-78	96.77	PsbA (Fragment) OS=freshwater phytoplankton environmental sample OX=940671 GN=ps...	[more]
A0A1Y0ACL0	1.1e-78	96.77	Photosystem II protein D1 OS=Andropogon fastigiatus OX=330559 GN=psbA PE=3 SV=1	[more]
W8SIR2	1.1e-78	96.77	Photosystem II protein D1 OS=Chlorella sorokiniana OX=3076 GN=psbA1 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 1..134 e-value: 7.5E-25 score: 89.5
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..155
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 1..148 e-value: 1.0E-42 score: 146.1
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 1..155
IPR000484	Photosynthetic reaction centre, L/M	PROSITE	PS00244	REACTION_CENTER	coord: 20..46
None	No IPR available	PANTHER	PTHR33149:SF30	PHOTOSYNTHETIC REACTION CENTRE, L/M-RELATED	coord: 1..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi04M000519	Bhi04M000519	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009635	response to herbicide
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0042170	plastid membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding