Bhi02G000389 (gene) Wax gourd (B227) v1

Overview


Name	Bhi02G000389
Type	gene
Organism	Benincasa hispida (Wax gourd (B227) v1)
Description	RNA-binding protein CP31B, chloroplastic
Location	chr2: 9898927 .. 9899546 (-)
RNA-Seq Expression	Bhi02G000389
Synteny	Bhi02G000389

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACGTTATTCATTTCAGCAGCTTTTCAGACCTATACCTCTGATGGCTCGTCCTCTCTATCTCCGGCAGCTCATCCTCTCTATCTCCATCGTCGACTCCTTCCAGCGCGAGCTTCCTACCAACTCCATCAAGATCTGAGAGATCGAATCCTTCCAGCATCGTCGAGCTTTATTTCAGGTTTGTTCCAGATCTAAAAGTTGTTCTCTTCACACATTTCAGGTTTATTTTAGGTCAAACAAAAAGTTGAAGAAGAAATTAAGAGAAAAAGCTAGCCGAATCATTGATTTCCTCAGTCGCCGGAAAAGACTCCAACGGTGATGTTTTTGATGAACTGGACATAGAATCTCGGCGACAATCCTTCAAAGAGCTATTAGGCACTGCTAGTCGCCGTGGACCCAGATTGTCTAAGCAAGAGAAACGAAGAGAATCACTCATTTTGATAGCTCCGAATGGGAATAAGAATGAGAAGAAGGAAGATGGGAATTGGGGATTGGGAGATATGAAGAGGGGGAGGAAGAGGAAGAGAGATGAAGGGGTGAAAGAAAAGAATGTGGTTGATGGGTTGGAAGAGAATAATGAGAAGGCCAAAAAGTTGAAGAAAAAGAAGCAACAATAG

mRNA sequence

ATGCAGACGTTATTCATTTCAGCAGCTTTTCAGACCTATACCTCTGATGGCTCGTCCTCTCTATCTCCGGCAGCTCATCCTCTCTATCTCCATCGTCGACTCCTTCCAGCGCGAGCTTCCTACCAACTCCATCAAGATCTGAGAGATCGAATCCTTCCAGCATCGTCGAGCTTTATTTCAGTCGCCGGAAAAGACTCCAACGGTGATGTTTTTGATGAACTGGACATAGAATCTCGGCGACAATCCTTCAAAGAGCTATTAGGCACTGCTAGTCGCCGTGGACCCAGATTGTCTAAGCAAGAGAAACGAAGAGAATCACTCATTTTGATAGCTCCGAATGGGAATAAGAATGAGAAGAAGGAAGATGGGAATTGGGGATTGGGAGATATGAAGAGGGGGAGGAAGAGGAAGAGAGATGAAGGGGTGAAAGAAAAGAATGTGGTTGATGGGTTGGAAGAGAATAATGAGAAGGCCAAAAAGTTGAAGAAAAAGAAGCAACAATAG

Coding sequence (CDS)

ATGCAGACGTTATTCATTTCAGCAGCTTTTCAGACCTATACCTCTGATGGCTCGTCCTCTCTATCTCCGGCAGCTCATCCTCTCTATCTCCATCGTCGACTCCTTCCAGCGCGAGCTTCCTACCAACTCCATCAAGATCTGAGAGATCGAATCCTTCCAGCATCGTCGAGCTTTATTTCAGTCGCCGGAAAAGACTCCAACGGTGATGTTTTTGATGAACTGGACATAGAATCTCGGCGACAATCCTTCAAAGAGCTATTAGGCACTGCTAGTCGCCGTGGACCCAGATTGTCTAAGCAAGAGAAACGAAGAGAATCACTCATTTTGATAGCTCCGAATGGGAATAAGAATGAGAAGAAGGAAGATGGGAATTGGGGATTGGGAGATATGAAGAGGGGGAGGAAGAGGAAGAGAGATGAAGGGGTGAAAGAAAAGAATGTGGTTGATGGGTTGGAAGAGAATAATGAGAAGGCCAAAAAGTTGAAGAAAAAGAAGCAACAATAG

Protein sequence

MQTLFISAAFQTYTSDGSSSLSPAAHPLYLHRRLLPARASYQLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQEKRRESLILIAPNGNKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKKLKKKKQQ

Homology

[Close]

BLAST of Bhi02G000389 vs. NCBI nr
Match: XP_038891335.1 (protein gar2 [Benincasa hispida])

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-34
Identity = 91/126 (72.22%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 42  QLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQE 101
           +L + LR+++  A S   SVAGKDSNGDV  E D ESRR+S KELLGT  R GPRLSK+E
Sbjct: 7   KLKKKLREKL--AESLISSVAGKDSNGDVSGEPDTESRRKSLKELLGTVCRHGPRLSKRE 66

Query: 102 KRRESLILIAPNGNKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKKL 161
           KRRESLIL A +GNK+EKKEDGN GLG+ KR +KRKRDEG KEKN+VDGLEENNEKAKKL
Sbjct: 67  KRRESLILTASDGNKDEKKEDGNRGLGETKREKKRKRDEGAKEKNLVDGLEENNEKAKKL 126

Query: 162 KKKKQQ 168
           KKKK+Q
Sbjct: 127 KKKKKQ 130

[Close]

BLAST of Bhi02G000389 vs. NCBI nr
Match: XP_008461639.1 (PREDICTED: RNA-binding protein CP31B, chloroplastic [Cucumis melo])

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-30
Identity = 85/126 (67.46%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 42  QLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQE 101
           +L Q LR+++  A S   SVAGKD+N DV  E D ES R+S KELLGTAS  GPRLSK+E
Sbjct: 7   KLKQKLREKL--AESLISSVAGKDTNVDVSGERDTESPRKSLKELLGTASGHGPRLSKRE 66

Query: 102 KRRESLILIAPNGNKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKKL 161
           KRRESLIL   +GNKNEKKE+ N GLG+MKR +KRKR+EGVKEKN VDGLE++ EKAKKL
Sbjct: 67  KRRESLILTGSDGNKNEKKEEENQGLGEMKREKKRKRNEGVKEKNAVDGLEKDKEKAKKL 126

Query: 162 KKKKQQ 168
           K KK+Q
Sbjct: 127 KNKKKQ 130

[Close]

BLAST of Bhi02G000389 vs. NCBI nr
Match: XP_031742307.1 (protein gar2 [Cucumis sativus] >KAE8647980.1 hypothetical protein Csa_000404 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-26
Identity = 81/126 (64.29%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 42  QLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQE 101
           +L Q LR+++  A S   SVAG+D+N  V  E D ES R+S KELLGTAS  GPRLSK+E
Sbjct: 7   KLKQKLREKL--AESLISSVAGRDTNFGVSGERDTESPRKSLKELLGTASGNGPRLSKRE 66

Query: 102 KRRESLILIAPNGNKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKKL 161
           KRRESL+L   +GNK EKKED N GLG+    +KRKR+EGVKEKN VDGLEE+NEKAKKL
Sbjct: 67  KRRESLVLTGSDGNKKEKKEDENQGLGE----KKRKRNEGVKEKNAVDGLEEDNEKAKKL 126

Query: 162 KKKKQQ 168
           K KK+Q
Sbjct: 127 KNKKKQ 126

[Close]

BLAST of Bhi02G000389 vs. NCBI nr
Match: XP_022139342.1 (protein gar2 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 7.3e-22
Identity = 76/127 (59.84%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 42  QLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQE 101
           +L Q LR+++  A S   +VAGKDS GDV  E D ESR QS +ELLG  S  GPRLSK+E
Sbjct: 7   KLKQKLREKL--AESLIATVAGKDSVGDVSGEPDSESRPQSLRELLGAVSHHGPRLSKRE 66

Query: 102 KRRESLILIAPN-GNKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKK 161
           KRRESL L+A +  N  EKKED N  LG  KR  KRKRDE   EK+ +DG  ENNEKAKK
Sbjct: 67  KRRESLTLVASDEKNNEEKKEDENQRLGGTKREXKRKRDEEGAEKSALDGSAENNEKAKK 126

Query: 162 LKKKKQQ 168
           LKKKK++
Sbjct: 127 LKKKKKK 131

[Close]

BLAST of Bhi02G000389 vs. NCBI nr
Match: XP_023517053.1 (protein gar2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.7 bits (278), Expect = 6.2e-21
Identity = 74/127 (58.27%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 42  QLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQE 101
           +L Q  R+++  A S   S+AGK SNGDV  E + +SR QS KELLG   R G RLSK+E
Sbjct: 7   KLKQKFREKL--AESLISSIAGKVSNGDVSGEPESDSRPQSLKELLGGTGRHGTRLSKRE 66

Query: 102 KRRESLILIAPNG-NKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKK 161
           KRRES+I  A +G N  EKKE  N  LG+ KR +KRKRDE VKEK+ VDGLEE++EKAKK
Sbjct: 67  KRRESVISAASDGKNDEEKKEGENQRLGERKREKKRKRDEEVKEKSAVDGLEEDDEKAKK 126

Query: 162 LKKKKQQ 168
           LK KK +
Sbjct: 127 LKLKKNK 131

[Close]

BLAST of Bhi02G000389 vs. ExPASy TrEMBL
Match: A0A1S3CF29 (RNA-binding protein CP31B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500194 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.1e-30
Identity = 85/126 (67.46%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 42  QLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQE 101
           +L Q LR+++  A S   SVAGKD+N DV  E D ES R+S KELLGTAS  GPRLSK+E
Sbjct: 7   KLKQKLREKL--AESLISSVAGKDTNVDVSGERDTESPRKSLKELLGTASGHGPRLSKRE 66

Query: 102 KRRESLILIAPNGNKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKKL 161
           KRRESLIL   +GNKNEKKE+ N GLG+MKR +KRKR+EGVKEKN VDGLE++ EKAKKL
Sbjct: 67  KRRESLILTGSDGNKNEKKEEENQGLGEMKREKKRKRNEGVKEKNAVDGLEKDKEKAKKL 126

Query: 162 KKKKQQ 168
           K KK+Q
Sbjct: 127 KNKKKQ 130

[Close]

BLAST of Bhi02G000389 vs. ExPASy TrEMBL
Match: A0A0A0KLT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180870 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.2e-27
Identity = 81/126 (64.29%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 42  QLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQE 101
           +L Q LR+++  A S   SVAG+D+N  V  E D ES R+S KELLGTAS  GPRLSK+E
Sbjct: 7   KLKQKLREKL--AESLISSVAGRDTNFGVSGERDTESPRKSLKELLGTASGNGPRLSKRE 66

Query: 102 KRRESLILIAPNGNKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKKL 161
           KRRESL+L   +GNK EKKED N GLG+    +KRKR+EGVKEKN VDGLEE+NEKAKKL
Sbjct: 67  KRRESLVLTGSDGNKKEKKEDENQGLGE----KKRKRNEGVKEKNAVDGLEEDNEKAKKL 126

Query: 162 KKKKQQ 168
           K KK+Q
Sbjct: 127 KNKKKQ 126

[Close]

BLAST of Bhi02G000389 vs. ExPASy TrEMBL
Match: A0A6J1CDP4 (protein gar2 OS=Momordica charantia OX=3673 GN=LOC111010281 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 3.5e-22
Identity = 76/127 (59.84%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 42  QLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQE 101
           +L Q LR+++  A S   +VAGKDS GDV  E D ESR QS +ELLG  S  GPRLSK+E
Sbjct: 7   KLKQKLREKL--AESLIATVAGKDSVGDVSGEPDSESRPQSLRELLGAVSHHGPRLSKRE 66

Query: 102 KRRESLILIAPN-GNKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKK 161
           KRRESL L+A +  N  EKKED N  LG  KR  KRKRDE   EK+ +DG  ENNEKAKK
Sbjct: 67  KRRESLTLVASDEKNNEEKKEDENQRLGGTKREXKRKRDEEGAEKSALDGSAENNEKAKK 126

Query: 162 LKKKKQQ 168
           LKKKK++
Sbjct: 127 LKKKKKK 131

[Close]

BLAST of Bhi02G000389 vs. ExPASy TrEMBL
Match: A0A6J1FSC3 (protein gar2 OS=Cucurbita moschata OX=3662 GN=LOC111447996 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.4e-20
Identity = 72/127 (56.69%), Postives = 89/127 (70.08%), Query Frame = 0


Query: 42  QLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQE 101
           +L Q  R+++  A S   S+AGK SNGDV  E + +SR QS KELLG   R G RLSK+E
Sbjct: 7   KLKQKFREKL--AESLISSIAGKVSNGDVSGEPESDSRPQSLKELLGGTGRHGTRLSKRE 66

Query: 102 KRRESLILIAPNG-NKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKK 161
           KRRES+I  A +G N  EKKE  N  LG+ K  +KRKR+E VKEK+ VDGLEE++EKAKK
Sbjct: 67  KRRESVISTASDGKNDEEKKEGENQRLGERKGEKKRKRNEEVKEKSAVDGLEEDDEKAKK 126

Query: 162 LKKKKQQ 168
           LK KK +
Sbjct: 127 LKLKKNK 131

[Close]

BLAST of Bhi02G000389 vs. ExPASy TrEMBL
Match: A0A6J1JA04 (protein gar2-like OS=Cucurbita maxima OX=3661 GN=LOC111483911 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 9.6e-20
Identity = 71/125 (56.80%), Postives = 87/125 (69.60%), Query Frame = 0


Query: 42  QLHQDLRDRILPASSSFISVAGKDSNGDVFDELDIESRRQSFKELLGTASRRGPRLSKQE 101
           +L Q  R+++  A S   S+AG+ SNGDV  E + +SR QS KELLG   R G RLSK+E
Sbjct: 7   KLKQKFREKL--AESLISSIAGRVSNGDVSGEPESDSRPQSLKELLGGTGRHGTRLSKRE 66

Query: 102 KRRESLILIAPNG-NKNEKKEDGNWGLGDMKRGRKRKRDEGVKEKNVVDGLEENNEKAKK 161
           KRRES I  A +G N  EKKE  N  LG+ K  +KRKR+E VKEK+ VDGLEE++EKAKK
Sbjct: 67  KRRESFISTASDGKNDEEKKEGENQRLGERKGEKKRKRNEEVKEKSAVDGLEEDDEKAKK 126

Query: 162 LKKKK 166
           LKK K
Sbjct: 127 LKKNK 129

The following BLAST results are available for this feature:

BLAST of Bhi02G000389 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi02G000389 vs.


Match Name	E-value	Identity	Description

BLAST of Bhi02G000389 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891335.1	1.7e-34	72.22	protein gar2 [Benincasa hispida]	[more]
XP_008461639.1	4.3e-30	67.46	PREDICTED: RNA-binding protein CP31B, chloroplastic [Cucumis melo]	[more]
XP_031742307.1	1.3e-26	64.29	protein gar2 [Cucumis sativus] >KAE8647980.1 hypothetical protein Csa_000404 [Cu...	[more]
XP_022139342.1	7.3e-22	59.84	protein gar2 [Momordica charantia]	[more]
XP_023517053.1	6.2e-21	58.27	protein gar2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Bhi02G000389 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CF29	2.1e-30	67.46	RNA-binding protein CP31B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500194...	[more]
A0A0A0KLT8	6.2e-27	64.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G180870 PE=4 SV=1	[more]
A0A6J1CDP4	3.5e-22	59.84	protein gar2 OS=Momordica charantia OX=3673 GN=LOC111010281 PE=4 SV=1	[more]
A0A6J1FSC3	7.4e-20	56.69	protein gar2 OS=Cucurbita moschata OX=3662 GN=LOC111447996 PE=4 SV=1	[more]
A0A6J1JA04	9.6e-20	56.80	protein gar2-like OS=Cucurbita maxima OX=3661 GN=LOC111483911 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Wax gourd (B227) v1
Date Performed: 2021-10-22


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 148..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M000389	Bhi02M000389	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding