Cla97C03G066930 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G066930
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Histone H2A
Location	Cla97Chr03 : 30419830 .. 30420366 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCCACCGGCGGTTCCACCAAAGGAGGCAGAGGAAAGCCCAAAGCCACCAAATCCGTCTCCCGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGCAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCTGAACGTGTCGGCGCTGGAGCTCCAGTCTACTTATCCGCCGTCCTCGAGTATCTCGCCGCTGAGGTAATAACAACATCCGTTCTCTTTCTTTTTTTCTAACTGATTCCGATGGAATTCTGTTTCGATTTTGTGCGATAGATCTCTAATTTTCTATCCATTGATTTCAATCGGAATTAGGTTTTGGAACTTGCTGGGAATGCTGCTAGAGACAACAAAAAGAATCGTATTGTACCGAGGCATATTCAGCTTGCAGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACCATCGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAAGTTGGTAAAGATAAGGGTGACATTGGTTCTGCATCACAGGAATTTTAG

mRNA sequence

ATGAGTTCCACCGGCGGTTCCACCAAAGGAGGCAGAGGAAAGCCCAAAGCCACCAAATCCGTCTCCCGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGCAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCTGAACGTGTCGGCGCTGGAGCTCCAGTCTACTTATCCGCCGTCCTCGAGTATCTCGCCGCTGAGGTTTTGGAACTTGCTGGGAATGCTGCTAGAGACAACAAAAAGAATCGTATTGTACCGAGGCATATTCAGCTTGCAGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACCATCGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAAGTTGGTAAAGATAAGGGTGACATTGGTTCTGCATCACAGGAATTTTAG

Coding sequence (CDS)

ATGAGTTCCACCGGCGGTTCCACCAAAGGAGGCAGAGGAAAGCCCAAAGCCACCAAATCCGTCTCCCGATCGCACAAAGCCGGCCTCCAGTTCCCCGTCGGCAGAATCGCAAGGTTTCTCAAGGCCGGAAAGTACGCTGAACGTGTCGGCGCTGGAGCTCCAGTCTACTTATCCGCCGTCCTCGAGTATCTCGCCGCTGAGGTTTTGGAACTTGCTGGGAATGCTGCTAGAGACAACAAAAAGAATCGTATTGTACCGAGGCATATTCAGCTTGCAGTGAGAAACGATGAGGAATTGAGTAAGCTTTTGGGATCTGTAACCATCGCTAATGGAGGTGTTTTGCCCAATATTCACCAAACTCTTTTGCCTAAAAAAGTTGGTAAAGATAAGGGTGACATTGGTTCTGCATCACAGGAATTTTAG

Protein sequence

MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKDKGDIGSASQEF

Homology

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BLAST of Cla97C03G066930 vs. NCBI nr
Match: XP_004135645.1 (PREDICTED: histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2AX [Cucumis melo] >KGN66125.1 Histone H2A [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 1.3e-68
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

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BLAST of Cla97C03G066930 vs. NCBI nr
Match: XP_022154594.1 (probable histone H2AXb [Momordica charantia])

HSP 1 Score: 266.5 bits (680), Expect = 5.0e-68
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS GGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSAGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

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BLAST of Cla97C03G066930 vs. NCBI nr
Match: XP_006433236.1 (histone H2AX [Citrus clementina] >XP_006471940.1 histone H2AX [Citrus sinensis] >ESR46476.1 hypothetical protein CICLE_v10002804mg [Citrus clementina])

HSP 1 Score: 264.2 bits (674), Expect = 2.5e-67
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGK KGDIGSASQEF
Sbjct: 121 LLPKKVGKGKGDIGSASQEF 140

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BLAST of Cla97C03G066930 vs. NCBI nr
Match: GAY58772.1 (hypothetical protein CUMW_189470 [Citrus unshiu])

HSP 1 Score: 263.1 bits (671), Expect = 5.5e-67
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK+GK KGDIGSASQEF
Sbjct: 121 LLPKKMGKGKGDIGSASQEF 140

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BLAST of Cla97C03G066930 vs. NCBI nr
Match: XP_016673688.1 (PREDICTED: histone H2AX-like [Gossypium hirsutum] >XP_017618295.1 PREDICTED: histone H2AX-like [Gossypium arboreum] >KHG15784.1 hypothetical protein F383_22140 [Gossypium arboreum] >PPR97664.1 hypothetical protein GOBAR_AA23011 [Gossypium barbadense])

HSP 1 Score: 261.9 bits (668), Expect = 1.2e-66
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK+GKDKG+IGSASQEF
Sbjct: 121 LLPKKMGKDKGEIGSASQEF 140

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BLAST of Cla97C03G066930 vs. TrEMBL
Match: tr|A0A1S3BQI1|A0A1S3BQI1_CUCME (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 8.6e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

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BLAST of Cla97C03G066930 vs. TrEMBL
Match: tr|A0A0A0LW51|A0A0A0LW51_CUCSA (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 8.6e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGKDKGDIGSASQEF
Sbjct: 121 LLPKKVGKDKGDIGSASQEF 140

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BLAST of Cla97C03G066930 vs. TrEMBL
Match: tr|V4TA53|V4TA53_9ROSI (Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.6e-67
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGK KGDIGSASQEF
Sbjct: 121 LLPKKVGKGKGDIGSASQEF 140

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BLAST of Cla97C03G066930 vs. TrEMBL
Match: tr|A0A2H5Q2I1|A0A2H5Q2I1_CITUN (Histone H2A OS=Citrus unshiu OX=55188 GN=CUMW_189470 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.6e-67
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK+GK KGDIGSASQEF
Sbjct: 121 LLPKKMGKGKGDIGSASQEF 140

[Close]

BLAST of Cla97C03G066930 vs. TrEMBL
Match: tr|A0A0B0NVE5|A0A0B0NVE5_GOSAR (Histone H2A OS=Gossypium arboreum OX=29729 GN=F383_22140 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 8.1e-67
Identity = 136/140 (97.14%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSSTGGSTKGGRGKPKA+KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSTGGSTKGGRGKPKASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK+GKDKG+IGSASQEF
Sbjct: 121 LLPKKMGKDKGEIGSASQEF 140

[Close]

BLAST of Cla97C03G066930 vs. Swiss-Prot
Match: sp|Q9S9K7|H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.5e-65
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSSTGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 QTLLPKKVGKDKGDIGSASQEF 141
           QTLLP KVGK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cla97C03G066930 vs. Swiss-Prot
Match: sp|O04848|H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.0e-65
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 3   STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 62
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 122
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 123 TLLPKKVGKDKGDIGSASQEF 141
           TLLP KVGK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cla97C03G066930 vs. Swiss-Prot
Match: sp|O65759|H2AX_CICAR (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 7.8e-65
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSST  +TKGGRGKPKA+KSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKKVGK KG+IGSASQEF
Sbjct: 121 LLPKKVGKGKGEIGSASQEF 139

[Close]

BLAST of Cla97C03G066930 vs. Swiss-Prot
Match: sp|P35063|H2AX_PICAB (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.3e-63
Identity = 128/140 (91.43%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS+G   KGGRGK K+TKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AV
Sbjct: 1   MSSSG--AKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK GKDKG+IGSASQEF
Sbjct: 121 LLPKKSGKDKGEIGSASQEF 138

[Close]

BLAST of Cla97C03G066930 vs. Swiss-Prot
Match: sp|A2XLI0|H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.0e-57
Identity = 122/140 (87.14%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MSSTGGSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60
           MSS+ G   GGRGK K TK+VSRS KAGLQFPVGRIAR+LKAGKYAERVGAGAPVYLSAV
Sbjct: 1   MSSSQGG--GGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120
           LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQV 120

Query: 121 LLPKKVGKDKGDIGSASQEF 141
           LLPKK G  KGDIGSASQEF
Sbjct: 121 LLPKK-GGGKGDIGSASQEF 137

[Close]

BLAST of Cla97C03G066930 vs. TAIR10
Match: AT1G54690.1 (gamma histone variant H2AX)

HSP 1 Score: 248.8 bits (634), Expect = 1.9e-66
Identity = 134/142 (94.37%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSSTGGS--TKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60
           MSS  GS  TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS
Sbjct: 1   MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLS 60

Query: 61  AVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120
           AVLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIH 120

Query: 121 QTLLPKKVGKDKGDIGSASQEF 141
           QTLLP KVGK+KGDIGSASQEF
Sbjct: 121 QTLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cla97C03G066930 vs. TAIR10
Match: AT1G08880.1 (Histone superfamily protein)

HSP 1 Score: 248.1 bits (632), Expect = 3.3e-66
Identity = 132/141 (93.62%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 3   STG---GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSA 62
           STG   G+TKGGRGKPKATKSVSRS KAGLQFPVGRIARFLK+GKYAERVGAGAPVYLSA
Sbjct: 2   STGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSA 61

Query: 63  VLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 122
           VLEYLAAEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ
Sbjct: 62  VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQ 121

Query: 123 TLLPKKVGKDKGDIGSASQEF 141
           TLLP KVGK+KGDIGSASQEF
Sbjct: 122 TLLPSKVGKNKGDIGSASQEF 142

[Close]

BLAST of Cla97C03G066930 vs. TAIR10
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-51
Identity = 106/124 (85.48%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 11  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 70
           GRGK      A KS SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 130
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

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BLAST of Cla97C03G066930 vs. TAIR10
Match: AT5G54640.1 (Histone superfamily protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-50
Identity = 106/125 (84.80%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 6   GSTKGGRGKPKATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLA 65
           G T G  G  KAT   SRS KAGLQFPVGRIARFLKAGKYAERVGAGAPVYL+AVLEYLA
Sbjct: 5   GKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLA 64

Query: 66  AEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 125
           AEVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK
Sbjct: 65  AEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKK 124

Query: 126 VGKDK 131
            G  K
Sbjct: 125 AGASK 126

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BLAST of Cla97C03G066930 vs. TAIR10
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 194.1 bits (492), Expect = 5.7e-50
Identity = 103/124 (83.06%), Postives = 107/124 (86.29%), Query Frame = 0


Query: 11  GRGKP----KATKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 70
           GRGK      A K+ +RS KAGLQFPVGRIARFLK GKYAERVGAGAPVYL+AVLEYLAA
Sbjct: 3   GRGKTLGSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKV 130
           EVLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLPKK 
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of Cla97C03G066930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135645.1	1.3e-68	100.00	PREDICTED: histone H2AX [Cucumis sativus] >XP_008450716.1 PREDICTED: histone H2A...	[more]
XP_022154594.1	5.0e-68	99.29	probable histone H2AXb [Momordica charantia]	[more]
XP_006433236.1	2.5e-67	98.57	histone H2AX [Citrus clementina] >XP_006471940.1 histone H2AX [Citrus sinensis] ...	[more]
GAY58772.1	5.5e-67	97.86	hypothetical protein CUMW_189470 [Citrus unshiu]	[more]
XP_016673688.1	1.2e-66	97.14	PREDICTED: histone H2AX-like [Gossypium hirsutum] >XP_017618295.1 PREDICTED: his...	[more]

BLAST of Cla97C03G066930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BQI1\|A0A1S3BQI1_CUCME	8.6e-69	100.00	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492212 PE=3 SV=1	[more]
tr\|A0A0A0LW51\|A0A0A0LW51_CUCSA	8.6e-69	100.00	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_1G572950 PE=3 SV=1	[more]
tr\|V4TA53\|V4TA53_9ROSI	1.6e-67	98.57	Histone H2A OS=Citrus clementina OX=85681 GN=CICLE_v10002804mg PE=3 SV=1	[more]
tr\|A0A2H5Q2I1\|A0A2H5Q2I1_CITUN	3.6e-67	97.86	Histone H2A OS=Citrus unshiu OX=55188 GN=CUMW_189470 PE=3 SV=1	[more]
tr\|A0A0B0NVE5\|A0A0B0NVE5_GOSAR	8.1e-67	97.14	Histone H2A OS=Gossypium arboreum OX=29729 GN=F383_22140 PE=3 SV=1	[more]

BLAST of Cla97C03G066930 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9S9K7\|H2AXB_ARATH	3.5e-65	94.37	Probable histone H2AXb OS=Arabidopsis thaliana OX=3702 GN=At1g54690 PE=1 SV=1	[more]
sp\|O04848\|H2AXA_ARATH	6.0e-65	93.62	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]
sp\|O65759\|H2AX_CICAR	7.8e-65	94.29	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
sp\|P35063\|H2AX_PICAB	4.3e-63	91.43	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
sp\|A2XLI0\|H2AXA_ORYSI	6.0e-57	87.14	Probable histone H2AXa OS=Oryza sativa subsp. indica OX=39946 GN=OsI_012923 PE=3...	[more]

BLAST of Cla97C03G066930 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54690.1	1.9e-66	94.37	gamma histone variant H2AX	[more]
AT1G08880.1	3.3e-66	93.62	Histone superfamily protein	[more]
AT4G27230.1	3.0e-51	85.48	histone H2A 2	[more]
AT5G54640.1	1.1e-50	84.80	Histone superfamily protein	[more]
AT1G51060.1	5.7e-50	83.06	histone H2A 10	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR032458	Histone_H2A_CS
IPR032454	Histone_H2A_C
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold
IPR002119	Histone_H2A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001510	RNA methylation
biological_process	GO:0008283	cell proliferation
biological_process	GO:0008150	biological_process
biological_process	GO:0006342	chromatin silencing
biological_process	GO:0006325	chromatin organization
cellular_component	GO:0005694	chromosome
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000790	nuclear chromatin
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G066930.1	Cla97C03G066930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 48..63 score: 84.58 coord: 77..91 score: 75.49 coord: 63..76 score: 89.46 coord: 19..41 score: 69.77 coord: 105..123 score: 70.23
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 e-value: 1.0E-76 score: 270.9
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 13..125 e-value: 6.53265E-66 score: 197.558
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 7..133 e-value: 9.4E-61 score: 205.2
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 22..125
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 13..94 e-value: 1.2E-14 score: 54.7
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 97..130 e-value: 2.9E-18 score: 65.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 6..139
None	No IPR available	PANTHER	PTHR23430:SF207	SUBFAMILY NOT NAMED	coord: 6..139
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 27..33

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G066930	Cla011310	Watermelon (97103) v1	wmwmbB125
Cla97C03G066930	Csa1G572950	Cucumber (Chinese Long) v2	cuwmbB042
Cla97C03G066930	MELO3C015363	Melon (DHL92) v3.5.1	mewmbB249
Cla97C03G066930	ClCG03G016620	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G066930	CSPI01G27050	Wild cucumber (PI 183967)	cpiwmbB043
Cla97C03G066930	Cucsa.163750	Cucumber (Gy14) v1	cgywmbB287
Cla97C03G066930	CmaCh10G011090	Cucurbita maxima (Rimu)	cmawmbB062
Cla97C03G066930	CmoCh10G011920	Cucurbita moschata (Rifu)	cmowmbB049
Cla97C03G066930	CmoCh11G011440	Cucurbita moschata (Rifu)	cmowmbB096
Cla97C03G066930	Lsi06G001690	Bottle gourd (USVL1VR-Ls)	lsiwmbB365
Cla97C03G066930	CsGy1G026230	Cucumber (Gy14) v2	cgybwmbB041
Cla97C03G066930	MELO3C015363.2	Melon (DHL92) v3.6.1	medwmbB235
Cla97C03G066930	Carg21137	Silver-seed gourd	carwmbB0576
Cla97C03G066930	CsaV3_1G039370	Cucumber (Chinese Long) v3	cucwmbB041
Cla97C03G066930	Bhi02G001773	Wax gourd	wgowmbB633

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G066930	Cucurbita maxima (Rimu)	cmawmbB110