CsaV3_6G006800 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AAATAAAGAAGAAAAGGGATGGGAAGGGTGAAAGAAGTGAAATTTGAAAGTAAGAAATATAAAGAATAAAAAGATGCAATGGAATTGGGATGGTCTCAAGTAAGTAAGCCAATTGATTCGAGTACCTTCACCAACATGCGTGACCTTTCAAGTAAGAAAAATTCCCATCTGATTTTCAAACCCTAATTTTCAACTTCTTCACCATTCACACTCAAATCTGAATCTTTGCATTTACCTATCAGGCTTTCATCTGTCGCAGATTTGAATTCAATTGCTTCTCAAAGATACCAACTTTCTAGATTGCACCCTTTCGTTCGTTGGATATTGTTCTGTTTTGGTTTTTTATCGTTTTGTTCTCGATCTGGGTGTCTTTGAGTTTATTGGTTCCGATATAGGGCTTGGATGAAGAAATCGTGATATTGGGGGAAATTGTTTGATCTGAATACACTGTAAGGAGTTACTTAATGACTAGTGCCAAATTGTTCTTCATTTTTTTTATTCTGATGGAATGATTTATAGTCTGTATATGAGCAGTATTGATTTAGGCATTGTGTAAAAGAGGAAGTTTTGAAGGGCAATTTTCAGATGGGGAGGCCTTTATTTTATGAGATTCTTGAAAAACCAGCCACAAGTGGGATTATAGGGATTTGCTGTGCTATATGGTTTTACATCCAGAAGAAAAACATTGGGTATTCGCATGTGGGGTTGAGTTATGAGACTGCCGTGGAAGGTCACCATTGGAGGATAATAACTTCAGCCTTTTCCCATATTAGTGTTATTCATCTGGTTTTTAACATGAGTGCTCTTTGGAGTCTTGGGGCTGTAGAACAGCTGGGGCATATTGGCTTGGGTGTTCCTTATTATCTCCACTACACTCTTGTTTTGGTCATACTCTCTGGTGTGCTAGTTTTAGGAATGTACCATCTCTTGATTCAAAAGTTTAAGCTCGAATACTTTCGACGAGTTACCGCTGTTGGATATTCTTGTGTGGTTTTCGGGTGGATGACTATACTTTCTGTGAGGCAACCGTCTTCTAAATTGGACCTCTTTGGCTTCCTTTCGCTACCCATCAGTTTTGCACCATTTGAATCACTGATCTTTACTTCCATTATTGTACCACAAGCAAGTTTTCTTGGACATCTATCTGGAATAATTGTTGGATATGCTATAGCTTGGGGTTTGATCCATGGGATGAATAACTTCTGGGCCATTTCCATGTTAGGATGGGTTGTTCTTGTCTTTATATTTAGCTTGAAGAAATCTAACACGTACAACTTCGATTTTCTGGAGATTGAATCCGTAACAGACCCTTCCTTGCCGTCTGTTCGATTTCTTTCATCTGGAAATGGTAGAACCTTGCAGATGAACGCATTGCCAACTGGAGATGTAGAGATTGTATGAATTTTTAGGGGAGCTGTTTGCATACTTAAGATGTTGAAATTGATAATCTGCTATCCAGTGAAATGGTCTTTGAGATGCTCTCATGCTGGAAATGATCTGGTCAAGCTATCAGGGGTTTTCTCTTGTTCCTGATGTTGGTGACAAGATTACTGGTGTGCAATATTACCGTTCATTAGCATTGAACTGCACAGGAGATATCAGCTGTAAGGAAGATGGTTCAGCCAAGAAGTAATGCTTAAATGGATTTGTCCAATCGCATTTGTACCATAGAGGCTCAAATATCATCTCTGCTGATATATTTTTTCTCCTTTTCCTTGAAGTTTAGTCAAGTGTTTTGTGGATTATTGTTTAACATTTGAAGGCACTGCCTACCACCAACAAACTCCCAAATTTAGAGTTTGTGATGATCTTTAAGAGTAAAGCTTTTAATTGAATTGTTTCGTTAACAAGTGTTTTTAGTTTCTTTGAAGGTATTAGTGTTTTCAAGATTTCCAAATGTATCTCTAGTCATGATAAATTTGAGGTTGAATTATTATGCCCATTTCTGATCGACATATAGTCAGTTAGAGCTTGAATTTTGATTTCAAACTCGCACAGGAAAAGAAAAATAATATAGTTTCATATTTCTTAATCCTTTCAAAAGTGCAAAAGGGATAGGAAAGCCATATCCCTCGTTCCAATAACTTTTGTACATTCTATCTTTGTGACCAC ATGGGGAGGCCTTTATTTTATGAGATTCTTGAAAAACCAGCCACAAGTGGGATTATAGGGATTTGCTGTGCTATATGGTTTTACATCCAGAAGAAAAACATTGGGTATTCGCATGTGGGGTTGAGTTATGAGACTGCCGTGGAAGGTCACCATTGGAGGATAATAACTTCAGCCTTTTCCCATATTAGTGTTATTCATCTGGTTTTTAACATGAGTGCTCTTTGGAGTCTTGGGGCTGTAGAACAGCTGGGGCATATTGGCTTGGGTGTTCCTTATTATCTCCACTACACTCTTGTTTTGGTCATACTCTCTGGTGTGCTAGTTTTAGGAATGTACCATCTCTTGATTCAAAAGTTTAAGCTCGAATACTTTCGACGAGTTACCGCTGTTGGATATTCTTGTGTGGTTTTCGGGTGGATGACTATACTTTCTGTGAGGCAACCGTCTTCTAAATTGGACCTCTTTGGCTTCCTTTCGCTACCCATCAGTTTTGCACCATTTGAATCACTGATCTTTACTTCCATTATTGTACCACAAGCAAGTTTTCTTGGACATCTATCTGGAATAATTGTTGGATATGCTATAGCTTGGGGTTTGATCCATGGGATGAATAACTTCTGGGCCATTTCCATGTTAGGATGGGTTGTTCTTGTCTTTATATTTAGCTTGAAGAAATCTAACACGTACAACTTCGATTTTCTGGAGATTGAATCCGTAACAGACCCTTCCTTGCCGTCTGTTCGATTTCTTTCATCTGGAAATGGTAGAACCTTGCAGATGAACGCATTGCCAACTGGAGATGTAGAGATTGTATGA ATGGGGAGGCCTTTATTTTATGAGATTCTTGAAAAACCAGCCACAAGTGGGATTATAGGGATTTGCTGTGCTATATGGTTTTACATCCAGAAGAAAAACATTGGGTATTCGCATGTGGGGTTGAGTTATGAGACTGCCGTGGAAGGTCACCATTGGAGGATAATAACTTCAGCCTTTTCCCATATTAGTGTTATTCATCTGGTTTTTAACATGAGTGCTCTTTGGAGTCTTGGGGCTGTAGAACAGCTGGGGCATATTGGCTTGGGTGTTCCTTATTATCTCCACTACACTCTTGTTTTGGTCATACTCTCTGGTGTGCTAGTTTTAGGAATGTACCATCTCTTGATTCAAAAGTTTAAGCTCGAATACTTTCGACGAGTTACCGCTGTTGGATATTCTTGTGTGGTTTTCGGGTGGATGACTATACTTTCTGTGAGGCAACCGTCTTCTAAATTGGACCTCTTTGGCTTCCTTTCGCTACCCATCAGTTTTGCACCATTTGAATCACTGATCTTTACTTCCATTATTGTACCACAAGCAAGTTTTCTTGGACATCTATCTGGAATAATTGTTGGATATGCTATAGCTTGGGGTTTGATCCATGGGATGAATAACTTCTGGGCCATTTCCATGTTAGGATGGGTTGTTCTTGTCTTTATATTTAGCTTGAAGAAATCTAACACGTACAACTTCGATTTTCTGGAGATTGAATCCGTAACAGACCCTTCCTTGCCGTCTGTTCGATTTCTTTCATCTGGAAATGGTAGAACCTTGCAGATGAACGCATTGCCAACTGGAGATGTAGAGATTGTATGA MGRPLFYEILEKPATSGIIGICCAIWFYIQKKNIGYSHVGLSYETAVEGHHWRIITSAFSHISVIHLVFNMSALWSLGAVEQLGHIGLGVPYYLHYTLVLVILSGVLVLGMYHLLIQKFKLEYFRRVTAVGYSCVVFGWMTILSVRQPSSKLDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIAWGLIHGMNNFWAISMLGWVVLVFIFSLKKSNTYNFDFLEIESVTDPSLPSVRFLSSGNGRTLQMNALPTGDVEIV
BLAST of CsaV3_6G006800 vs. NCBI nr
Match: XP_011656727.1 (PREDICTED: rhomboid protein 2 [Cucumis sativus] >KGN46305.1 hypothetical protein Csa_6G081460 [Cucumis sativus]) HSP 1 Score: 542.3 bits (1396), Expect = 9.1e-151 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. NCBI nr
Match: XP_008460036.1 (PREDICTED: RHOMBOID-like protein 13 [Cucumis melo] >ADN34087.1 rhomboid protein [Cucumis melo subsp. melo]) HSP 1 Score: 541.2 bits (1393), Expect = 2.0e-150 Identity = 270/271 (99.63%), Postives = 271/271 (100.00%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. NCBI nr
Match: XP_022954125.1 (RHOMBOID-like protein 13 [Cucurbita moschata] >XP_022954126.1 RHOMBOID-like protein 13 [Cucurbita moschata] >XP_022954127.1 RHOMBOID-like protein 13 [Cucurbita moschata] >XP_023520866.1 RHOMBOID-like protein 13 isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 526.2 bits (1354), Expect = 6.7e-146 Identity = 259/271 (95.57%), Postives = 269/271 (99.26%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. NCBI nr
Match: XP_023520865.1 (RHOMBOID-like protein 13 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 526.2 bits (1354), Expect = 6.7e-146 Identity = 259/271 (95.57%), Postives = 269/271 (99.26%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. NCBI nr
Match: XP_022992352.1 (RHOMBOID-like protein 13 isoform X2 [Cucurbita maxima] >XP_022992353.1 RHOMBOID-like protein 13 isoform X2 [Cucurbita maxima] >XP_022992354.1 RHOMBOID-like protein 13 isoform X2 [Cucurbita maxima]) HSP 1 Score: 525.0 bits (1351), Expect = 1.5e-145 Identity = 258/271 (95.20%), Postives = 269/271 (99.26%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. TAIR10
Match: AT3G59520.1 (RHOMBOID-like protein 13) HSP 1 Score: 445.3 bits (1144), Expect = 2.7e-125 Identity = 215/271 (79.34%), Postives = 247/271 (91.14%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. TAIR10
Match: AT3G58460.2 (RHOMBOID-like protein 15) HSP 1 Score: 60.1 bits (144), Expect = 2.5e-09 Identity = 48/175 (27.43%), Postives = 88/175 (50.29%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. TAIR10
Match: AT3G17611.1 (RHOMBOID-like protein 14) HSP 1 Score: 57.4 bits (137), Expect = 1.6e-08 Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. Swiss-Prot
Match: sp|Q9M1B5|RBL13_ARATH (RHOMBOID-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=RBL13 PE=3 SV=1) HSP 1 Score: 445.3 bits (1144), Expect = 4.9e-124 Identity = 215/271 (79.34%), Postives = 247/271 (91.14%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. Swiss-Prot
Match: sp|O74926|RBD2_SCHPO (Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rbd2 PE=3 SV=2) HSP 1 Score: 62.8 bits (151), Expect = 6.9e-09 Identity = 63/228 (27.63%), Postives = 105/228 (46.05%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. Swiss-Prot
Match: sp|Q8LB17|RBL15_ARATH (Rhomboid-like protein 15 OS=Arabidopsis thaliana OX=3702 GN=RBL15 PE=1 SV=2) HSP 1 Score: 60.1 bits (144), Expect = 4.5e-08 Identity = 48/175 (27.43%), Postives = 88/175 (50.29%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. Swiss-Prot
Match: sp|Q8RXW0|RBL14_ARATH (Rhomboid-like protein 14, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBL14 PE=2 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.9e-07 Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. Swiss-Prot
Match: sp|Q6FSG0|RBD2_CANGA (Rhomboid protein 2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=RBD2 PE=3 SV=1) HSP 1 Score: 52.4 bits (124), Expect = 9.3e-06 Identity = 48/145 (33.10%), Postives = 77/145 (53.10%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. TrEMBL
Match: tr|A0A0A0K961|A0A0A0K961_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G081460 PE=4 SV=1) HSP 1 Score: 542.3 bits (1396), Expect = 6.0e-151 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. TrEMBL
Match: tr|A0A1S3CB49|A0A1S3CB49_CUCME (RHOMBOID-like protein 13 OS=Cucumis melo OX=3656 GN=LOC103498973 PE=4 SV=1) HSP 1 Score: 541.2 bits (1393), Expect = 1.3e-150 Identity = 270/271 (99.63%), Postives = 271/271 (100.00%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. TrEMBL
Match: tr|E5GC88|E5GC88_CUCME (Rhomboid protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 541.2 bits (1393), Expect = 1.3e-150 Identity = 270/271 (99.63%), Postives = 271/271 (100.00%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. TrEMBL
Match: tr|A0A2P5G0N0|A0A2P5G0N0_9ROSA (Peptidase S54, rhomboid domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_008230 PE=4 SV=1) HSP 1 Score: 492.7 bits (1267), Expect = 5.5e-136 Identity = 241/271 (88.93%), Postives = 257/271 (94.83%), Query Frame = 0
BLAST of CsaV3_6G006800 vs. TrEMBL
Match: tr|A0A2P5CSG8|A0A2P5CSG8_PARAD (Peptidase S54, rhomboid domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_127290 PE=4 SV=1) HSP 1 Score: 492.3 bits (1266), Expect = 7.1e-136 Identity = 241/271 (88.93%), Postives = 257/271 (94.83%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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