CsaV3_4G003910 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G003910
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4 : 2391769 .. 2392330 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAGAGAGTTTCAATGATTTTGAATGTGGTGTTCTTCATTATTATGCTTTTAATTTCATCTAATAACAATTATAATGTTTCTGCAAGAAAATTTCTTGATGTTAATACCCCTCTTGATGATGCCTTCAACCTTCAAATGGATGCATCTTCATTATTCTGTGAGTTTTCTTAACTTTTTTTTTTCTTCTCAATCTTAAGATGTTCTTGTTTTAGTTTGTTTAAATGAGTTATTATTTCGTTTTCTATTTTATAATTAGGGTTATAAACACTATTCTTCAATATCTAATTCTGCCTAGTATTGTTTTTATCTAATTTTTAACCTATTTTTACGAGTGTGTTTTCAAAATGATCCAAACCAAAGTGCTAGCTAGTAAGTTACGTTATAATTATAATTATAGGGTTTGAAAAATGATGTTAATTTGAATCTGTAATTTGATTTACTTTTATGGCTTTAATTTGTTTCAGATAAAATGAAGGGGGAGCTACAAAGGAGATTCGAGGATTTATTAAAAGCAACCACTGATAATGATATTCCTCGAGGTGGAAACTACTAA

mRNA sequence

ATGGCTTCCAAGAGAGTTTCAATGATTTTGAATGTGGTGTTCTTCATTATTATGCTTTTAATTTCATCTAATAACAATTATAATGTTTCTGCAAGAAAATTTCTTGATGTTAATACCCCTCTTGATGATGCCTTCAACCTTCAAATGGATGCATCTTCATTATTCTATAAAATGAAGGGGGAGCTACAAAGGAGATTCGAGGATTTATTAAAAGCAACCACTGATAATGATATTCCTCGAGGTGGAAACTACTAA

Coding sequence (CDS)

ATGGCTTCCAAGAGAGTTTCAATGATTTTGAATGTGGTGTTCTTCATTATTATGCTTTTAATTTCATCTAATAACAATTATAATGTTTCTGCAAGAAAATTTCTTGATGTTAATACCCCTCTTGATGATGCCTTCAACCTTCAAATGGATGCATCTTCATTATTCTATAAAATGAAGGGGGAGCTACAAAGGAGATTCGAGGATTTATTAAAAGCAACCACTGATAATGATATTCCTCGAGGTGGAAACTACTAA

Protein sequence

MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKGELQRRFEDLLKATTDNDIPRGGNY

Homology

[Close]

BLAST of CsaV3_4G003910 vs. NCBI nr
Match: KGN53134.1 (hypothetical protein Csa_4G022210 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 7.2e-30
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MASKRVSMILNVXXXXXXXXXXXXXXYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60
          MASKRVSMILNVXXXXXXXXXXXXXXYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG
Sbjct: 1  MASKRVSMILNVXXXXXXXXXXXXXXYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 ELQRRFEDLLKATTDNDIPRGGNY 85
          ELQRRFEDLLKATTDNDIPRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]

BLAST of CsaV3_4G003910 vs. NCBI nr
Match: KGN53135.1 (hypothetical protein Csa_4G022220 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 60/85 (70.59%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MASKRVSMILNVXXXXXXXXXXXXXXYNVSARKFLDVNTP-LDDAFNLQMDASSLFYKMK 60
          MAS RVSMIL V              YN SARKFLDVN P LDDAF+LQM ASSLFYK++
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GELQRRFEDLLKATTDNDIPRGGNY 85
          GELQ+RFEDLLK TTDNDIPRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]

BLAST of CsaV3_4G003910 vs. TrEMBL
Match: tr|A0A0A0KW84|A0A0A0KW84_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 4.8e-30
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MASKRVSMILNVXXXXXXXXXXXXXXYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60
          MASKRVSMILNVXXXXXXXXXXXXXXYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG
Sbjct: 1  MASKRVSMILNVXXXXXXXXXXXXXXYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 ELQRRFEDLLKATTDNDIPRGGNY 85
          ELQRRFEDLLKATTDNDIPRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]

BLAST of CsaV3_4G003910 vs. TrEMBL
Match: tr|A0A0A0KU24|A0A0A0KU24_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.4e-23
Identity = 60/85 (70.59%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MASKRVSMILNVXXXXXXXXXXXXXXYNVSARKFLDVNTP-LDDAFNLQMDASSLFYKMK 60
          MAS RVSMIL V              YN SARKFLDVN P LDDAF+LQM ASSLFYK++
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GELQRRFEDLLKATTDNDIPRGGNY 85
          GELQ+RFEDLLK TTDNDIPRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

The following BLAST results are available for this feature:

BLAST of CsaV3_4G003910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53134.1	7.2e-30	100.00	hypothetical protein Csa_4G022210 [Cucumis sativus]	[more]
KGN53135.1	1.1e-22	70.59	hypothetical protein Csa_4G022220 [Cucumis sativus]	[more]

BLAST of CsaV3_4G003910 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G003910 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G003910 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KW84\|A0A0A0KW84_CUCSA	4.8e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1	[more]
tr\|A0A0A0KU24\|A0A0A0KU24_CUCSA	7.4e-23	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G003910.1	CsaV3_4G003910.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G003910	Cucsa.094320	Cucumber (Gy14) v1	cgycucB102
CsaV3_4G003910	CmaCh04G003460	Cucurbita maxima (Rimu)	cmacucB0842
CsaV3_4G003910	CmoCh04G003630	Cucurbita moschata (Rifu)	cmocucB0828
CsaV3_4G003910	Cp4.1LG01g03610	Cucurbita pepo (Zucchini)	cpecucB0498
CsaV3_4G003910	CsGy4G003760	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G003910	ClCG07G016760	Watermelon (Charleston Gray)	cucwcgB336
CsaV3_4G003910	Lsi07G000920	Bottle gourd (USVL1VR-Ls)	cuclsiB322
CsaV3_4G003910	MELO3C032840.2	Melon (DHL92) v3.6.1	cucmedB307
CsaV3_4G003910	Cla97C07G143760	Watermelon (97103) v2	cucwmbB324
CsaV3_4G003910	Bhi01G002015	Wax gourd	cucwgoB373

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G003910	Cucurbita maxima (Rimu)	cmacucB0387
CsaV3_4G003910	Cucurbita moschata (Rifu)	cmocucB0384
CsaV3_4G003910	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G003910	Melon (DHL92) v3.5.1	cucmeB315
CsaV3_4G003910	Watermelon (97103) v1	cucwmB324