CmoCh04G003630 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G003630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 1760637 .. 1761136 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACGAATGTTTCAGTGAGTTGGAGAGCTGTGTTCTTCATTGCTATGCTTTTAATGGCTTCTAATGTTTCTTCCAGGAAACTTCTTGATGCTAATATCCCTGTTGAGGATGGCTTCAACGTTGAAATTGGCGCATCTTCCTTCTTCTGTGAGTATCAATTTCTCTCTCGGATGTTCAGCTCGAGCTTTTCTGTGTTCGTATGTTGAGTGTTTTGTTTTTTGAAATTTGGGTCGGAGAATTTAAGGTTTATTGTTCTTAAGATTCAAACTTTTGACTTTCTAGTCAGAGATGTGTATCAATTATGGTCTAATTTGTTGATTTCAGATGAGTTGGAGGGCGAGCTCGAAAAGAGATTCGAGAGTTTCATAAAATCACACACTGACAATGATGTTCCTCGAGGTGGAAACTACTAGTTGGATGTGAAATAAGTTTCATGTTCCTTCAATCTTCATTAAGAATCCTTTTGTGCATAATAAAGAGATTAAAGGAACAA

mRNA sequence

ATGGCTTCCACGAATGTTTCAGTGAGTTGGAGAGCTGTGTTCTTCATTGCTATGCTTTTAATGGCTTCTAATGTTTCTTCCAGGAAACTTCTTGATGCTAATATCCCTGTTGAGGATGGCTTCAACGTTGAAATTGGCGCATCTTCCTTCTTCTATGAGTTGGAGGGCGAGCTCGAAAAGAGATTCGAGAGTTTCATAAAATCACACACTGACAATGATGTTCCTCGAGGTGGAAACTACTAGTTGGATGTGAAATAAGTTTCATGTTCCTTCAATCTTCATTAAGAATCCTTTTGTGCATAATAAAGAGATTAAAGGAACAA

Coding sequence (CDS)

ATGGCTTCCACGAATGTTTCAGTGAGTTGGAGAGCTGTGTTCTTCATTGCTATGCTTTTAATGGCTTCTAATGTTTCTTCCAGGAAACTTCTTGATGCTAATATCCCTGTTGAGGATGGCTTCAACGTTGAAATTGGCGCATCTTCCTTCTTCTATGAGTTGGAGGGCGAGCTCGAAAAGAGATTCGAGAGTTTCATAAAATCACACACTGACAATGATGTTCCTCGAGGTGGAAACTACTAG

Homology

[Close]

BLAST of CmoCh04G003630 vs. TrEMBL
Match: A0A0A0KW84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-17
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 1  MASTNVSVSWRAVFFIAMLLMASN----VSSRKLLDANIPVEDGFNVEIGASSFFYELEG 60
          MAS  VS+    VFFI MLL++SN    VS+RK LD N P++D FN+++ ASS FY+++G
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 ELEKRFESFIKSHTDNDVPRGGNY 81
          EL++RFE  +K+ TDND+PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]

BLAST of CmoCh04G003630 vs. TrEMBL
Match: A0A0A0KU24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.8e-16
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 1  MASTNVSVSWRAVFFIAMLLMASN----VSSRKLLDANIPV-EDGFNVEIGASSFFYELE 60
          MAS  VS+    +FFI ML ++SN     S+RK LD N P+ +D F++++GASS FY+LE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GELEKRFESFIKSHTDNDVPRGGNY 81
          GEL+KRFE  +K+ TDND+PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]

BLAST of CmoCh04G003630 vs. NCBI nr
Match: gi|700197976|gb|KGN53134.1| (hypothetical protein Csa_4G022210 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-17
Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 1


Query: 1  MASTNVSVSWRAVFFIAMLLMASN----VSSRKLLDANIPVEDGFNVEIGASSFFYELEG 60
          MAS  VS+    VFFI MLL++SN    VS+RK LD N P++D FN+++ ASS FY+++G
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 ELEKRFESFIKSHTDNDVPRGGNY 81
          EL++RFE  +K+ TDND+PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]

BLAST of CmoCh04G003630 vs. NCBI nr
Match: gi|700197977|gb|KGN53135.1| (hypothetical protein Csa_4G022220 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 8.4e-16
Identity = 47/85 (55.29%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 1  MASTNVSVSWRAVFFIAMLLMASN----VSSRKLLDANIPV-EDGFNVEIGASSFFYELE 60
          MAS  VS+    +FFI ML ++SN     S+RK LD N P+ +D F++++GASS FY+LE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GELEKRFESFIKSHTDNDVPRGGNY 81
          GEL+KRFE  +K+ TDND+PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

The following BLAST results are available for this feature:

BLAST of CmoCh04G003630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G003630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW84_CUCSA	1.4e-17	55.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022210 PE=4 SV=1	[more]
A0A0A0KU24_CUCSA	5.8e-16	55.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022220 PE=4 SV=1	[more]

BLAST of CmoCh04G003630 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G003630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197976\|gb\|KGN53134.1\|	2.0e-17	55.95	hypothetical protein Csa_4G022210 [Cucumis sativus]	[more]
gi\|700197977\|gb\|KGN53135.1\|	8.4e-16	55.29	hypothetical protein Csa_4G022220 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G003630.1	CmoCh04G003630.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G003630	Cucsa.094320	Cucumber (Gy14) v1	cgycmoB0197
CmoCh04G003630	CmaCh04G003460	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G003630	Csa4G022210	Cucumber (Chinese Long) v2	cmocuB700
CmoCh04G003630	ClCG07G016760	Watermelon (Charleston Gray)	cmowcgB671
CmoCh04G003630	Lsi07G000920	Bottle gourd (USVL1VR-Ls)	cmolsiB690
CmoCh04G003630	Cp4.1LG01g03610	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G003630	MELO3C032840.2	Melon (DHL92) v3.6.1	cmomedB788
CmoCh04G003630	CsaV3_4G003910	Cucumber (Chinese Long) v3	cmocucB0828
CmoCh04G003630	Cla97C07G143760	Watermelon (97103) v2	cmowmbB749
CmoCh04G003630	Bhi01G002015	Wax gourd	cmowgoB0845
CmoCh04G003630	CsGy4G003760	Cucumber (Gy14) v2	cgybcmoB516

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G003630	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh04G003630	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G003630	Wild cucumber (PI 183967)	cmocpiB708
CmoCh04G003630	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G003630	Silver-seed gourd	carcmoB0514
CmoCh04G003630	Silver-seed gourd	carcmoB1177