Cp4.1LG01g03610 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g03610
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 1705842 .. 1706257 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAAGAATGTTTCAGTGAGTTGGAGAGCTGTGTTCTTCATTGTTATGCTTTTAATGGCTTCTAATGTTTCTTCCAGGAAACTTCTTGATGCTAATATCCCTCTTGAGGATGGCTTCAACGTTGAAATTGGCACATCTTCATTCTTCTGTGAGTATCAATTTCTCTCTCGGATGTTGAGTGTTTTGTTTTTTGAAATTTGGGTCGGAGAATTTAGGGTTTATTGTTCTTAAGATTCAAACTTTTGACCTTCTAGTCAGAGATATGTATAAATTATCGTTGAGTTCTTGCACTCTTTTGAATCTCTAATTTCTTGATTTCAGATAAATTGGAGGGCGAGATGGAAAAGAGATTCGAGAGTTTCATAAAATCACACACGGGCAACGATGATCCTCGAGGTGGAAACTACTAG

mRNA sequence

ATGGCTTCCAAGAATGTTTCAGTGAGTTGGAGAGCTGTGTTCTTCATTGTTATGCTTTTAATGGCTTCTAATGTTTCTTCCAGGAAACTTCTTGATGCTAATATCCCTCTTGAGGATGGCTTCAACGTTGAAATTGGCACATCTTCATTCTTCTATAAATTGGAGGGCGAGATGGAAAAGAGATTCGAGAGTTTCATAAAATCACACACGGGCAACGATGATCCTCGAGGTGGAAACTACTAG

Coding sequence (CDS)

ATGGCTTCCAAGAATGTTTCAGTGAGTTGGAGAGCTGTGTTCTTCATTGTTATGCTTTTAATGGCTTCTAATGTTTCTTCCAGGAAACTTCTTGATGCTAATATCCCTCTTGAGGATGGCTTCAACGTTGAAATTGGCACATCTTCATTCTTCTATAAATTGGAGGGCGAGATGGAAAAGAGATTCGAGAGTTTCATAAAATCACACACGGGCAACGATGATCCTCGAGGTGGAAACTACTAG

Protein sequence

MASKNVSVSWRAVFFIVMLLMASNVSSRKLLDANIPLEDGFNVEIGTSSFFYKLEGEMEKRFESFIKSHTGNDDPRGGNY
Homology
[Close]
BLAST of Cp4.1LG01g03610 vs. TrEMBL
Match: A0A0A0KW84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-17
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 1 

Query: 1  MASKNVSVSWRAVFFIVMLLMASN----VSSRKLLDANIPLEDGFNVEIGTSSFFYKLEG 60
          MASK VS+    VFFI+MLL++SN    VS+RK LD N PL+D FN+++  SS FYK++G
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 EMEKRFESFIKSHTGNDDPRGGNY 81
          E+++RFE  +K+ T ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of Cp4.1LG01g03610 vs. TrEMBL
Match: A0A0A0KU24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.5e-15
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 1 

Query: 1  MASKNVSVSWRAVFFIVMLLMASN----VSSRKLLDANIPL-EDGFNVEIGTSSFFYKLE 60
          MAS  VS+    +FFI+ML ++SN     S+RK LD N PL +D F++++G SS FYKLE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GEMEKRFESFIKSHTGNDDPRGGNY 81
          GE++KRFE  +K+ T ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]
BLAST of Cp4.1LG01g03610 vs. NCBI nr
Match: gi|700197976|gb|KGN53134.1| (hypothetical protein Csa_4G022210 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 47/84 (55.95%), Postives = 63/84 (75.00%), Query Frame = 1 

Query: 1  MASKNVSVSWRAVFFIVMLLMASN----VSSRKLLDANIPLEDGFNVEIGTSSFFYKLEG 60
          MASK VS+    VFFI+MLL++SN    VS+RK LD N PL+D FN+++  SS FYK++G
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 EMEKRFESFIKSHTGNDDPRGGNY 81
          E+++RFE  +K+ T ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of Cp4.1LG01g03610 vs. NCBI nr
Match: gi|700197977|gb|KGN53135.1| (hypothetical protein Csa_4G022220 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 9.3e-15
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 1 

Query: 1  MASKNVSVSWRAVFFIVMLLMASN----VSSRKLLDANIPL-EDGFNVEIGTSSFFYKLE 60
          MAS  VS+    +FFI+ML ++SN     S+RK LD N PL +D F++++G SS FYKLE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GEMEKRFESFIKSHTGNDDPRGGNY 81
          GE++KRFE  +K+ T ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g03610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW84_CUCSA3.1e-1755.95Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022210 PE=4 SV=1[more]
A0A0A0KU24_CUCSA6.5e-1554.12Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022220 PE=4 SV=1[more]
BLAST of Cp4.1LG01g03610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g03610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197976|gb|KGN53134.1|4.4e-1755.95hypothetical protein Csa_4G022210 [Cucumis sativus][more]
gi|700197977|gb|KGN53135.1|9.3e-1554.12hypothetical protein Csa_4G022220 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g03610.1Cp4.1LG01g03610.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g03610Cucsa.094320Cucumber (Gy14) v1cgycpeB0191
Cp4.1LG01g03610CmaCh04G003460Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g03610CmoCh04G003630Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g03610Csa4G022210Cucumber (Chinese Long) v2cpecuB401
Cp4.1LG01g03610ClCG07G016760Watermelon (Charleston Gray)cpewcgB403
Cp4.1LG01g03610Lsi07G000920Bottle gourd (USVL1VR-Ls)cpelsiB374
Cp4.1LG01g03610MELO3C032840.2Melon (DHL92) v3.6.1cpemedB497
Cp4.1LG01g03610CsaV3_4G003910Cucumber (Chinese Long) v3cpecucB0498
Cp4.1LG01g03610Bhi01G002015Wax gourdcpewgoB0512
Cp4.1LG01g03610CsGy4G003760Cucumber (Gy14) v2cgybcpeB503
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g03610Cucurbita pepo (Zucchini)cpecpeB234
Cp4.1LG01g03610Cucurbita maxima (Rimu)cmacpeB351
Cp4.1LG01g03610Cucurbita moschata (Rifu)cmocpeB311
Cp4.1LG01g03610Wild cucumber (PI 183967)cpecpiB398
Cp4.1LG01g03610Silver-seed gourdcarcpeB0527
Cp4.1LG01g03610Silver-seed gourdcarcpeB1216