Lsi07G000920 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G000920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr07 : 1043352 .. 1044120 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCTCTTTTTTGCTTCTGAAATGGCTTCCAAGAGAGTTCCAGTGATTTGGAGTATGGTGTTCTTCATTATTATGATTTTAATGTCCTATAATAATAATTATAATGTTTCTGCAAGGAAATTTCTTGATGTTAATATCCCTCTTGAGGATGGCTTCAAGCTTCAAATGGGTGAATCATTTTCATTGTTCGGTGAGTCTCTAACTTCTTTCTCCATCTTTGATGTCTTAGTTTGAGTTTGTTTAATTAAACAACTTCATTTTATTTTTAAAACTAAGCTTATACCTTGTTTCGCCTAATTATTGCTTTTTAGTCTACTTCTTACAGCTAAGTTTTGAAAACAAGTTTTTTATTTATGAATTTTGGCTAATAATTCATTGATTTTTCTTAGGTGAGATGAAAACTATATCTATATAGTCGAGAAATTATAAAAAAAAAGTATAATTTTAAAAAACATGAAACTAAACAAAATCATTATCGAATGAAACCTCAGTAAATTATTTGTTTATGATTTTATGATCTATAGCCATAGAAAGTTTGTTTTTACTGTTAAAATATAAGATAAGTTTTTTCTTCTAATAATTATAGGGTTAAAAAAATGTTGGTAATCTGATGATATTGATCTTGCAATCTTTTTGAATATGTAAATTGATTTACTTATTTGATGGTTTGGTTTCAGATAAATTGGAGGGGGAACTACAAAAGAGATTGGAGGATTTCTTAAAAACAACCACTAGTAATGATATTCCTCGAGGTGGAAACTACTAA

mRNA sequence

CTCTCTCTCTTTTTTGCTTCTGAAATGGCTTCCAAGAGAGTTCCAGTGATTTGGAGTATGGTGTTCTTCATTATTATGATTTTAATGTCCTATAATAATAATTATAATGTTTCTGCAAGGAAATTTCTTGATGTTAATATCCCTCTTGAGGATGGCTTCAAGCTTCAAATGGGTGAATCATTTTCATTGTTCGATAAATTGGAGGGGGAACTACAAAAGAGATTGGAGGATTTCTTAAAAACAACCACTAGTAATGATATTCCTCGAGGTGGAAACTACTAA

Coding sequence (CDS)

CTCTCTCTCTTTTTTGCTTCTGAAATGGCTTCCAAGAGAGTTCCAGTGATTTGGAGTATGGTGTTCTTCATTATTATGATTTTAATGTCCTATAATAATAATTATAATGTTTCTGCAAGGAAATTTCTTGATGTTAATATCCCTCTTGAGGATGGCTTCAAGCTTCAAATGGGTGAATCATTTTCATTGTTCGATAAATTGGAGGGGGAACTACAAAAGAGATTGGAGGATTTCTTAAAAACAACCACTAGTAATGATATTCCTCGAGGTGGAAACTACTAA

Protein sequence

LSLFFASEMASKRVPVIWSMVFFIIMILMSYNNNYNVSARKFLDVNIPLEDGFKLQMGESFSLFDKLEGELQKRLEDFLKTTTSNDIPRGGNY
Homology
[Close]
BLAST of Lsi07G000920 vs. TrEMBL
Match: A0A0A0KW84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-24
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 1 

Query: 9  MASKRVPVIWSMVFFIIMILMSYNNNYNVSARKFLDVNIPLEDGFKLQMGESFSLFDKLE 68
          MASKRV +I ++VFFIIM+L+S NNNYNVSARKFLDVN PL+D F LQM  S SLF K++
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDAS-SLFYKMK 60

Query: 69 GELQKRLEDFLKTTTSNDIPRGGNY 94
          GELQ+R ED LK TT NDIPRGGNY
Sbjct: 61 GELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of Lsi07G000920 vs. TrEMBL
Match: A0A0A0KU24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-23
Identity = 63/86 (73.26%), Postives = 69/86 (80.23%), Query Frame = 1 

Query: 9  MASKRVPVIWSMVFFIIMILMSYNNNYNVSARKFLDVNIP-LEDGFKLQMGESFSLFDKL 68
          MAS RV +I  ++FFIIM+ +S NNNYN SARKFLDVN P L+D F LQMG S SLF KL
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGAS-SLFYKL 60

Query: 69 EGELQKRLEDFLKTTTSNDIPRGGNY 94
          EGELQKR ED LKTTT NDIPRGGNY
Sbjct: 61 EGELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]
BLAST of Lsi07G000920 vs. NCBI nr
Match: gi|700197976|gb|KGN53134.1| (hypothetical protein Csa_4G022210 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-24
Identity = 62/85 (72.94%), Postives = 71/85 (83.53%), Query Frame = 1 

Query: 9  MASKRVPVIWSMVFFIIMILMSYNNNYNVSARKFLDVNIPLEDGFKLQMGESFSLFDKLE 68
          MASKRV +I ++VFFIIM+L+S NNNYNVSARKFLDVN PL+D F LQM  S SLF K++
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDAS-SLFYKMK 60

Query: 69 GELQKRLEDFLKTTTSNDIPRGGNY 94
          GELQ+R ED LK TT NDIPRGGNY
Sbjct: 61 GELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of Lsi07G000920 vs. NCBI nr
Match: gi|700197977|gb|KGN53135.1| (hypothetical protein Csa_4G022220 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 4.8e-23
Identity = 63/86 (73.26%), Postives = 69/86 (80.23%), Query Frame = 1 

Query: 9  MASKRVPVIWSMVFFIIMILMSYNNNYNVSARKFLDVNIP-LEDGFKLQMGESFSLFDKL 68
          MAS RV +I  ++FFIIM+ +S NNNYN SARKFLDVN P L+D F LQMG S SLF KL
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGAS-SLFYKL 60

Query: 69 EGELQKRLEDFLKTTTSNDIPRGGNY 94
          EGELQKR ED LKTTT NDIPRGGNY
Sbjct: 61 EGELQKRFEDLLKTTTDNDIPRGGNY 85

The following BLAST results are available for this feature:
BLAST of Lsi07G000920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G000920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW84_CUCSA1.4e-2472.94Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022210 PE=4 SV=1[more]
A0A0A0KU24_CUCSA3.4e-2373.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022220 PE=4 SV=1[more]
BLAST of Lsi07G000920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G000920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197976|gb|KGN53134.1|2.0e-2472.94hypothetical protein Csa_4G022210 [Cucumis sativus][more]
gi|700197977|gb|KGN53135.1|4.8e-2373.26hypothetical protein Csa_4G022220 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G000920.1Lsi07G000920.1mRNA