CmaCh04G003460 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G003460
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 1687481 .. 1688206 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTCTTCATTCTTACAGATCAATTAAGCTCTCTCTCTCGTCCTAAAATGGCTTCCAAGAATGTTTCAGTGAGTTGGAGAGCTGTGTTCTTCATTGTTATGCTTTTAATGGCTTCTAATGTTTCTTCCAGGAAACTTCTTGATGCTAATATCCCTGTTGAGGATGGCTTCAACGTTGAAGTTGGCGCATCTTCATTCTTCTGTGAGTATCAACTTCTCTCTCGGATGTTCGGCTTGACTTTGTTCAACTTGATCCAAAGGATCGAGTTTTTTGTGTTGAGTGTTTTGTTTTTTGAAATTTGGGTAGGAGAATTTAGGGTTTATTGTTCTTAAGATTCGAACTTTTGACCATCTAATTAGAAATACATATCAATTATGGCCGAGTTCTTGCACTCTTTTGAATCTCTAATTTCTTGATTTCAGATAAGTTGGAGGGCCAGGTGGAAAAGAGATTCGAGAGTTTCATAAAATCACATACGGGCAACGATGATCCTCGAGGTGGAAACTACTAGTTAGATGTGAAATAAGTTTTATGTTCCTTCCATTTTCATTAAGAATCCTTTTGTTGCACCCATTCAAGCCCTACCCTTCGAAACCCGTTTCAACGAACAATTTTAGACATCTAAGAATCGTTCTCGTACTTCGAAAATATCTAAGAGTTTCTTGAACAATATTGTGATATCCCTCTTTCTAAGACTATCGAATGTTCTTGTAAATTATAGCTAAT

mRNA sequence

TGTTCTTCATTCTTACAGATCAATTAAGCTCTCTCTCTCGTCCTAAAATGGCTTCCAAGAATGTTTCAGTGAGTTGGAGAGCTGTGTTCTTCATTGTTATGCTTTTAATGGCTTCTAATGTTTCTTCCAGGAAACTTCTTGATGCTAATATCCCTGTTGAGGATGGCTTCAACGTTGAAGTTGGCGCATCTTCATTCTTCTATAAGTTGGAGGGCCAGGTGGAAAAGAGATTCGAGAGTTTCATAAAATCACATACGGGCAACGATGATCCTCGAGGTGGAAACTACTAGTTAGATGTGAAATAAGTTTTATGTTCCTTCCATTTTCATTAAGAATCCTTTTGTTGCACCCATTCAAGCCCTACCCTTCGAAACCCGTTTCAACGAACAATTTTAGACATCTAAGAATCGTTCTCGTACTTCGAAAATATCTAAGAGTTTCTTGAACAATATTGTGATATCCCTCTTTCTAAGACTATCGAATGTTCTTGTAAATTATAGCTAAT

Coding sequence (CDS)

ATGGCTTCCAAGAATGTTTCAGTGAGTTGGAGAGCTGTGTTCTTCATTGTTATGCTTTTAATGGCTTCTAATGTTTCTTCCAGGAAACTTCTTGATGCTAATATCCCTGTTGAGGATGGCTTCAACGTTGAAGTTGGCGCATCTTCATTCTTCTATAAGTTGGAGGGCCAGGTGGAAAAGAGATTCGAGAGTTTCATAAAATCACATACGGGCAACGATGATCCTCGAGGTGGAAACTACTAG

Protein sequence

MASKNVSVSWRAVFFIVMLLMASNVSSRKLLDANIPVEDGFNVEVGASSFFYKLEGQVEKRFESFIKSHTGNDDPRGGNY
Homology
[Close]
BLAST of CmaCh04G003460 vs. TrEMBL
Match: A0A0A0KW84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.3e-17
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 1 

Query: 1  MASKNVSVSWRAVFFIVMLLMASN----VSSRKLLDANIPVEDGFNVEVGASSFFYKLEG 60
          MASK VS+    VFFI+MLL++SN    VS+RK LD N P++D FN+++ ASS FYK++G
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 QVEKRFESFIKSHTGNDDPRGGNY 81
          ++++RFE  +K+ T ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of CmaCh04G003460 vs. TrEMBL
Match: A0A0A0KU24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-14
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 1  MASKNVSVSWRAVFFIVMLLMASN----VSSRKLLDANIPV-EDGFNVEVGASSFFYKLE 60
          MAS  VS+    +FFI+ML ++SN     S+RK LD N P+ +D F++++GASS FYKLE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GQVEKRFESFIKSHTGNDDPRGGNY 81
          G+++KRFE  +K+ T ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]
BLAST of CmaCh04G003460 vs. NCBI nr
Match: gi|700197976|gb|KGN53134.1| (hypothetical protein Csa_4G022210 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 7.6e-17
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = 1 

Query: 1  MASKNVSVSWRAVFFIVMLLMASN----VSSRKLLDANIPVEDGFNVEVGASSFFYKLEG 60
          MASK VS+    VFFI+MLL++SN    VS+RK LD N P++D FN+++ ASS FYK++G
Sbjct: 1  MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFYKMKG 60

Query: 61 QVEKRFESFIKSHTGNDDPRGGNY 81
          ++++RFE  +K+ T ND PRGGNY
Sbjct: 61 ELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of CmaCh04G003460 vs. NCBI nr
Match: gi|700197977|gb|KGN53135.1| (hypothetical protein Csa_4G022220 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-14
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 1  MASKNVSVSWRAVFFIVMLLMASN----VSSRKLLDANIPV-EDGFNVEVGASSFFYKLE 60
          MAS  VS+    +FFI+ML ++SN     S+RK LD N P+ +D F++++GASS FYKLE
Sbjct: 1  MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFYKLE 60

Query: 61 GQVEKRFESFIKSHTGNDDPRGGNY 81
          G+++KRFE  +K+ T ND PRGGNY
Sbjct: 61 GELQKRFEDLLKTTTDNDIPRGGNY 85

The following BLAST results are available for this feature:
BLAST of CmaCh04G003460 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G003460 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW84_CUCSA5.3e-1754.76Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022210 PE=4 SV=1[more]
A0A0A0KU24_CUCSA1.1e-1452.94Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022220 PE=4 SV=1[more]
BLAST of CmaCh04G003460 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G003460 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197976|gb|KGN53134.1|7.6e-1754.76hypothetical protein Csa_4G022210 [Cucumis sativus][more]
gi|700197977|gb|KGN53135.1|1.6e-1452.94hypothetical protein Csa_4G022220 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G003460.1CmaCh04G003460.1mRNA